The first complete genomic characterization of an Amur virus isolate from China
Amur virus (AMRV) is a member of the genus Hantavirus in the family Bunyaviridae . In this study, we determined for the first time the complete genome sequence of the AMRV H8205 strain, which was isolated from a patient with hemorrhagic fever with renal syndrome (HFRS) in China. The complete nucleot...
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| Veröffentlicht in: | Archives of virology 2013-10, Vol.158 (10), p.2185-2188 |
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| creator | Zhang, Yu Liu, Bo-Hua Lin, Fang Zhang, Yong-Guo Si, Bing-Yin Kang, Xiao-Ping Hu, Yi Li, Jing Wu, Xiao-Yan Li, Yu-Chang Zhu, Qing-Yu Yang, Yin-Hui |
| description | Amur virus (AMRV) is a member of the genus
Hantavirus
in the family
Bunyaviridae
. In this study, we determined for the first time the complete genome sequence of the AMRV H8205 strain, which was isolated from a patient with hemorrhagic fever with renal syndrome (HFRS) in China. The complete nucleotide sequence of the S segment of AMRV H8205 is 1699 nt long, with a 5’ noncoding region (5’NC) of 36 nt, followed by a coding sequence of 1290 nt and a 3’NC of 373 nt. The complete sequence of the M segment is 3615 nt long, with a 5’NC of 40 nt, followed by a coding sequence of 3408 nt and a 3’NC of 167 nt. The complete sequence of the L segment is 6536 nt long, with a 5’NC of 37 nt, followed by a coding sequence of 6453 nt and a 3’NC of 40 nt. The major open reading frame (ORF) of each of the three segments (S, nt 37-1326; M, nt 41-3445; L, nt 38-6490) has a coding capacity of 430 aa, 1135 aa, 2151 aa, respectively. Phylogenetic analysis of the nucleotide sequences using the NJ method indicated that H8205 virus, together with the Amur strains isolated from Far-Eastern Russia and Korea, forms a well-supported lineage. Our results will provide insights into the genetic diversity of hantaviruses (HNTV). |
| doi_str_mv | 10.1007/s00705-013-1633-7 |
| format | Article |
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Hantavirus
in the family
Bunyaviridae
. In this study, we determined for the first time the complete genome sequence of the AMRV H8205 strain, which was isolated from a patient with hemorrhagic fever with renal syndrome (HFRS) in China. The complete nucleotide sequence of the S segment of AMRV H8205 is 1699 nt long, with a 5’ noncoding region (5’NC) of 36 nt, followed by a coding sequence of 1290 nt and a 3’NC of 373 nt. The complete sequence of the M segment is 3615 nt long, with a 5’NC of 40 nt, followed by a coding sequence of 3408 nt and a 3’NC of 167 nt. The complete sequence of the L segment is 6536 nt long, with a 5’NC of 37 nt, followed by a coding sequence of 6453 nt and a 3’NC of 40 nt. The major open reading frame (ORF) of each of the three segments (S, nt 37-1326; M, nt 41-3445; L, nt 38-6490) has a coding capacity of 430 aa, 1135 aa, 2151 aa, respectively. Phylogenetic analysis of the nucleotide sequences using the NJ method indicated that H8205 virus, together with the Amur strains isolated from Far-Eastern Russia and Korea, forms a well-supported lineage. Our results will provide insights into the genetic diversity of hantaviruses (HNTV).</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-013-1633-7</identifier><identifier>PMID: 23605588</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Annotated Sequence Record ; Biomedical and Life Sciences ; Biomedicine ; Bunyaviridae ; Bunyaviridae - classification ; Bunyaviridae - genetics ; Cercopithecus aethiops ; China ; Evolution ; Fever ; Genome, Viral ; Genomes ; Hantavirus ; Infectious Diseases ; Medical Microbiology ; Molecular Sequence Data ; Pallets ; Phylogenetics ; Phylogeny ; RNA polymerase ; Thermal cycling ; Vero Cells ; Virology ; Viruses</subject><ispartof>Archives of virology, 2013-10, Vol.158 (10), p.2185-2188</ispartof><rights>Springer-Verlag Wien 2013</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c405t-c3b7d0b89d7bcd2e40c20e70e7abef63aa97cd27d82300639817bbea14a257b63</citedby><cites>FETCH-LOGICAL-c405t-c3b7d0b89d7bcd2e40c20e70e7abef63aa97cd27d82300639817bbea14a257b63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-013-1633-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-013-1633-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23605588$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Yu</creatorcontrib><creatorcontrib>Liu, Bo-Hua</creatorcontrib><creatorcontrib>Lin, Fang</creatorcontrib><creatorcontrib>Zhang, Yong-Guo</creatorcontrib><creatorcontrib>Si, Bing-Yin</creatorcontrib><creatorcontrib>Kang, Xiao-Ping</creatorcontrib><creatorcontrib>Hu, Yi</creatorcontrib><creatorcontrib>Li, Jing</creatorcontrib><creatorcontrib>Wu, Xiao-Yan</creatorcontrib><creatorcontrib>Li, Yu-Chang</creatorcontrib><creatorcontrib>Zhu, Qing-Yu</creatorcontrib><creatorcontrib>Yang, Yin-Hui</creatorcontrib><title>The first complete genomic characterization of an Amur virus isolate from China</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Amur virus (AMRV) is a member of the genus
Hantavirus
in the family
Bunyaviridae
. In this study, we determined for the first time the complete genome sequence of the AMRV H8205 strain, which was isolated from a patient with hemorrhagic fever with renal syndrome (HFRS) in China. The complete nucleotide sequence of the S segment of AMRV H8205 is 1699 nt long, with a 5’ noncoding region (5’NC) of 36 nt, followed by a coding sequence of 1290 nt and a 3’NC of 373 nt. The complete sequence of the M segment is 3615 nt long, with a 5’NC of 40 nt, followed by a coding sequence of 3408 nt and a 3’NC of 167 nt. The complete sequence of the L segment is 6536 nt long, with a 5’NC of 37 nt, followed by a coding sequence of 6453 nt and a 3’NC of 40 nt. The major open reading frame (ORF) of each of the three segments (S, nt 37-1326; M, nt 41-3445; L, nt 38-6490) has a coding capacity of 430 aa, 1135 aa, 2151 aa, respectively. Phylogenetic analysis of the nucleotide sequences using the NJ method indicated that H8205 virus, together with the Amur strains isolated from Far-Eastern Russia and Korea, forms a well-supported lineage. Our results will provide insights into the genetic diversity of hantaviruses (HNTV).</description><subject>Animals</subject><subject>Annotated Sequence Record</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Bunyaviridae</subject><subject>Bunyaviridae - classification</subject><subject>Bunyaviridae - genetics</subject><subject>Cercopithecus aethiops</subject><subject>China</subject><subject>Evolution</subject><subject>Fever</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Hantavirus</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Pallets</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>RNA polymerase</subject><subject>Thermal cycling</subject><subject>Vero Cells</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkVtLBCEYhiWK2g4_oJsQuulm6lNn1Llclk4Q7E1di-M4u8bMuOlMUL8-t90igiAQhc_nfUUehE4JXBIAcRXTBkUGhGWEM5aJHTQhOaOZFKXcRRNgkGeSgzxAhzE-A6QBK_bRAWUcikLKCZo_Li1uXIgDNr5btXaweGF73zmDzVIHbQYb3LsenO-xb7Du8bQbA351YYzYRd_qlGiC7_Bs6Xp9jPYa3UZ7sj2P0NPN9ePsLnuY397Ppg-ZyaEYMsMqUUMly1pUpqY2B0PBirR0ZRvOtC5FmotaUgbAWSmJqCqrSa5pISrOjtDFpncV_Mto46A6F41tW91bP0ZF8pwxXgIt_oEyUUjKy3Xr-S_02Y-hTx_5pEhOOSWJIhvKBB9jsI1aBdfp8KYIqLUYtRGjkhi1FqNEypxtm8eqs_V34stEAugGiOmqX9jw4-k_Wz8AS12XQA</recordid><startdate>20131001</startdate><enddate>20131001</enddate><creator>Zhang, Yu</creator><creator>Liu, Bo-Hua</creator><creator>Lin, Fang</creator><creator>Zhang, Yong-Guo</creator><creator>Si, Bing-Yin</creator><creator>Kang, Xiao-Ping</creator><creator>Hu, Yi</creator><creator>Li, Jing</creator><creator>Wu, Xiao-Yan</creator><creator>Li, Yu-Chang</creator><creator>Zhu, Qing-Yu</creator><creator>Yang, Yin-Hui</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20131001</creationdate><title>The first complete genomic characterization of an Amur virus isolate from China</title><author>Zhang, Yu ; Liu, Bo-Hua ; Lin, Fang ; Zhang, Yong-Guo ; Si, Bing-Yin ; Kang, Xiao-Ping ; Hu, Yi ; Li, Jing ; Wu, Xiao-Yan ; Li, Yu-Chang ; Zhu, Qing-Yu ; Yang, Yin-Hui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c405t-c3b7d0b89d7bcd2e40c20e70e7abef63aa97cd27d82300639817bbea14a257b63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Animals</topic><topic>Annotated Sequence Record</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Bunyaviridae</topic><topic>Bunyaviridae - classification</topic><topic>Bunyaviridae - genetics</topic><topic>Cercopithecus aethiops</topic><topic>China</topic><topic>Evolution</topic><topic>Fever</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Hantavirus</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Pallets</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>RNA polymerase</topic><topic>Thermal cycling</topic><topic>Vero Cells</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Yu</creatorcontrib><creatorcontrib>Liu, Bo-Hua</creatorcontrib><creatorcontrib>Lin, Fang</creatorcontrib><creatorcontrib>Zhang, Yong-Guo</creatorcontrib><creatorcontrib>Si, Bing-Yin</creatorcontrib><creatorcontrib>Kang, Xiao-Ping</creatorcontrib><creatorcontrib>Hu, Yi</creatorcontrib><creatorcontrib>Li, Jing</creatorcontrib><creatorcontrib>Wu, Xiao-Yan</creatorcontrib><creatorcontrib>Li, Yu-Chang</creatorcontrib><creatorcontrib>Zhu, Qing-Yu</creatorcontrib><creatorcontrib>Yang, Yin-Hui</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Yu</au><au>Liu, Bo-Hua</au><au>Lin, Fang</au><au>Zhang, Yong-Guo</au><au>Si, Bing-Yin</au><au>Kang, Xiao-Ping</au><au>Hu, Yi</au><au>Li, Jing</au><au>Wu, Xiao-Yan</au><au>Li, Yu-Chang</au><au>Zhu, Qing-Yu</au><au>Yang, Yin-Hui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The first complete genomic characterization of an Amur virus isolate from China</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2013-10-01</date><risdate>2013</risdate><volume>158</volume><issue>10</issue><spage>2185</spage><epage>2188</epage><pages>2185-2188</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Amur virus (AMRV) is a member of the genus
Hantavirus
in the family
Bunyaviridae
. In this study, we determined for the first time the complete genome sequence of the AMRV H8205 strain, which was isolated from a patient with hemorrhagic fever with renal syndrome (HFRS) in China. The complete nucleotide sequence of the S segment of AMRV H8205 is 1699 nt long, with a 5’ noncoding region (5’NC) of 36 nt, followed by a coding sequence of 1290 nt and a 3’NC of 373 nt. The complete sequence of the M segment is 3615 nt long, with a 5’NC of 40 nt, followed by a coding sequence of 3408 nt and a 3’NC of 167 nt. The complete sequence of the L segment is 6536 nt long, with a 5’NC of 37 nt, followed by a coding sequence of 6453 nt and a 3’NC of 40 nt. The major open reading frame (ORF) of each of the three segments (S, nt 37-1326; M, nt 41-3445; L, nt 38-6490) has a coding capacity of 430 aa, 1135 aa, 2151 aa, respectively. Phylogenetic analysis of the nucleotide sequences using the NJ method indicated that H8205 virus, together with the Amur strains isolated from Far-Eastern Russia and Korea, forms a well-supported lineage. Our results will provide insights into the genetic diversity of hantaviruses (HNTV).</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>23605588</pmid><doi>10.1007/s00705-013-1633-7</doi><tpages>4</tpages></addata></record> |
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| subjects | Animals Annotated Sequence Record Biomedical and Life Sciences Biomedicine Bunyaviridae Bunyaviridae - classification Bunyaviridae - genetics Cercopithecus aethiops China Evolution Fever Genome, Viral Genomes Hantavirus Infectious Diseases Medical Microbiology Molecular Sequence Data Pallets Phylogenetics Phylogeny RNA polymerase Thermal cycling Vero Cells Virology Viruses |
| title | The first complete genomic characterization of an Amur virus isolate from China |
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