Position dependence of the particle density in a double-chain section of a linear network in a totally asymmetric simple exclusion process

We report here results on the study of the totally asymmetric simple exclusion process, defined on an open network, consisting of head and tail simple-chain segments with a double-chain section inserted in between. Results of numerical simulations for relatively short chains reveal an interesting fe...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Physical review. E, Statistical, nonlinear, and soft matter physics Statistical, nonlinear, and soft matter physics, 2013-06, Vol.87 (6), p.062116-062116, Article 062116
Hauptverfasser: Pesheva, N C, Brankov, J G
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 062116
container_issue 6
container_start_page 062116
container_title Physical review. E, Statistical, nonlinear, and soft matter physics
container_volume 87
creator Pesheva, N C
Brankov, J G
description We report here results on the study of the totally asymmetric simple exclusion process, defined on an open network, consisting of head and tail simple-chain segments with a double-chain section inserted in between. Results of numerical simulations for relatively short chains reveal an interesting feature of the network. When the current through the system takes its maximum value, a simple translation of the double-chain section forward or backward along the network leads to a sharp change in the shape of the density profiles in the parallel chains, thus affecting the total number of particles in that part of the network. In the symmetric case of equal injection and ejection rates α=β>1/2 and equal lengths of the head and tail sections, the density profiles in the two parallel chains are almost linear, characteristic of the coexistence line (shock phase). Upon moving the section forward (backward), their shape changes to the one typical for the high- (low-) density phases of a simple chain. The total bulk density of particles in a section with a large number of parallel chains is evaluated too. The observed effect might have interesting implications for the traffic flow control as well as for biological transport processes in living cells. An explanation of this phenomenon is offered in terms of a finite-size dependence of the effective injection and ejection rates at the ends of the double-chain section.
doi_str_mv 10.1103/PhysRevE.87.062116
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1430851462</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1430851462</sourcerecordid><originalsourceid>FETCH-LOGICAL-c303t-ecea559b83f2702501d5e91c89104cb46329e6d3dbea5ba87e125b793bdeaf223</originalsourceid><addsrcrecordid>eNo9kclOwzAURS0EolD4ARbISzYpHuIMS1QxSZWoEKwjx3lRDU4cbAfIL_DVJLRl9Wz5nPskX4QuKFlQSvj1ejP4Z_i8XWTpgiSM0uQAnVAhSMR4mhxOZ55HPBVihk69fyOEM57Fx2g2jSzhyQn6WVuvg7YtrqCDtoJWAbY1DhvAnXRBKwPjUztCA9YtlriyfWkgUhs5Xj2oP3k0JDa6BelwC-HLuvctHWyQxgxY-qFpIDitsNdNN4bCtzK9n-TOWQXen6GjWhoP57s5R693ty_Lh2j1dP-4vFlFihMeIlAghcjLjNcsJUwQWgnIqcpySmJVxglnOSQVr8qRK2WWAmWiTHNeViBrxvgcXW1zx70fPfhQNNorMEa2YHtf0JiTTNA4mVC2RZWz3juoi87pRrqhoKSYOij2HRRZWmw7GKXLXX5fNlD9K_tP57_8oIdN</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1430851462</pqid></control><display><type>article</type><title>Position dependence of the particle density in a double-chain section of a linear network in a totally asymmetric simple exclusion process</title><source>MEDLINE</source><source>American Physical Society Journals</source><creator>Pesheva, N C ; Brankov, J G</creator><creatorcontrib>Pesheva, N C ; Brankov, J G</creatorcontrib><description>We report here results on the study of the totally asymmetric simple exclusion process, defined on an open network, consisting of head and tail simple-chain segments with a double-chain section inserted in between. Results of numerical simulations for relatively short chains reveal an interesting feature of the network. When the current through the system takes its maximum value, a simple translation of the double-chain section forward or backward along the network leads to a sharp change in the shape of the density profiles in the parallel chains, thus affecting the total number of particles in that part of the network. In the symmetric case of equal injection and ejection rates α=β&gt;1/2 and equal lengths of the head and tail sections, the density profiles in the two parallel chains are almost linear, characteristic of the coexistence line (shock phase). Upon moving the section forward (backward), their shape changes to the one typical for the high- (low-) density phases of a simple chain. The total bulk density of particles in a section with a large number of parallel chains is evaluated too. The observed effect might have interesting implications for the traffic flow control as well as for biological transport processes in living cells. An explanation of this phenomenon is offered in terms of a finite-size dependence of the effective injection and ejection rates at the ends of the double-chain section.</description><identifier>ISSN: 1539-3755</identifier><identifier>EISSN: 1550-2376</identifier><identifier>DOI: 10.1103/PhysRevE.87.062116</identifier><identifier>PMID: 23848636</identifier><language>eng</language><publisher>United States</publisher><subject>Biological Transport - physiology ; Biopolymers - metabolism ; Computer Simulation ; Models, Biological ; Models, Chemical ; Particle Size</subject><ispartof>Physical review. E, Statistical, nonlinear, and soft matter physics, 2013-06, Vol.87 (6), p.062116-062116, Article 062116</ispartof><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c303t-ecea559b83f2702501d5e91c89104cb46329e6d3dbea5ba87e125b793bdeaf223</citedby><cites>FETCH-LOGICAL-c303t-ecea559b83f2702501d5e91c89104cb46329e6d3dbea5ba87e125b793bdeaf223</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,2863,2864,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23848636$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pesheva, N C</creatorcontrib><creatorcontrib>Brankov, J G</creatorcontrib><title>Position dependence of the particle density in a double-chain section of a linear network in a totally asymmetric simple exclusion process</title><title>Physical review. E, Statistical, nonlinear, and soft matter physics</title><addtitle>Phys Rev E Stat Nonlin Soft Matter Phys</addtitle><description>We report here results on the study of the totally asymmetric simple exclusion process, defined on an open network, consisting of head and tail simple-chain segments with a double-chain section inserted in between. Results of numerical simulations for relatively short chains reveal an interesting feature of the network. When the current through the system takes its maximum value, a simple translation of the double-chain section forward or backward along the network leads to a sharp change in the shape of the density profiles in the parallel chains, thus affecting the total number of particles in that part of the network. In the symmetric case of equal injection and ejection rates α=β&gt;1/2 and equal lengths of the head and tail sections, the density profiles in the two parallel chains are almost linear, characteristic of the coexistence line (shock phase). Upon moving the section forward (backward), their shape changes to the one typical for the high- (low-) density phases of a simple chain. The total bulk density of particles in a section with a large number of parallel chains is evaluated too. The observed effect might have interesting implications for the traffic flow control as well as for biological transport processes in living cells. An explanation of this phenomenon is offered in terms of a finite-size dependence of the effective injection and ejection rates at the ends of the double-chain section.</description><subject>Biological Transport - physiology</subject><subject>Biopolymers - metabolism</subject><subject>Computer Simulation</subject><subject>Models, Biological</subject><subject>Models, Chemical</subject><subject>Particle Size</subject><issn>1539-3755</issn><issn>1550-2376</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kclOwzAURS0EolD4ARbISzYpHuIMS1QxSZWoEKwjx3lRDU4cbAfIL_DVJLRl9Wz5nPskX4QuKFlQSvj1ejP4Z_i8XWTpgiSM0uQAnVAhSMR4mhxOZ55HPBVihk69fyOEM57Fx2g2jSzhyQn6WVuvg7YtrqCDtoJWAbY1DhvAnXRBKwPjUztCA9YtlriyfWkgUhs5Xj2oP3k0JDa6BelwC-HLuvctHWyQxgxY-qFpIDitsNdNN4bCtzK9n-TOWQXen6GjWhoP57s5R693ty_Lh2j1dP-4vFlFihMeIlAghcjLjNcsJUwQWgnIqcpySmJVxglnOSQVr8qRK2WWAmWiTHNeViBrxvgcXW1zx70fPfhQNNorMEa2YHtf0JiTTNA4mVC2RZWz3juoi87pRrqhoKSYOij2HRRZWmw7GKXLXX5fNlD9K_tP57_8oIdN</recordid><startdate>201306</startdate><enddate>201306</enddate><creator>Pesheva, N C</creator><creator>Brankov, J G</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201306</creationdate><title>Position dependence of the particle density in a double-chain section of a linear network in a totally asymmetric simple exclusion process</title><author>Pesheva, N C ; Brankov, J G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c303t-ecea559b83f2702501d5e91c89104cb46329e6d3dbea5ba87e125b793bdeaf223</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Biological Transport - physiology</topic><topic>Biopolymers - metabolism</topic><topic>Computer Simulation</topic><topic>Models, Biological</topic><topic>Models, Chemical</topic><topic>Particle Size</topic><toplevel>online_resources</toplevel><creatorcontrib>Pesheva, N C</creatorcontrib><creatorcontrib>Brankov, J G</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Physical review. E, Statistical, nonlinear, and soft matter physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pesheva, N C</au><au>Brankov, J G</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Position dependence of the particle density in a double-chain section of a linear network in a totally asymmetric simple exclusion process</atitle><jtitle>Physical review. E, Statistical, nonlinear, and soft matter physics</jtitle><addtitle>Phys Rev E Stat Nonlin Soft Matter Phys</addtitle><date>2013-06</date><risdate>2013</risdate><volume>87</volume><issue>6</issue><spage>062116</spage><epage>062116</epage><pages>062116-062116</pages><artnum>062116</artnum><issn>1539-3755</issn><eissn>1550-2376</eissn><abstract>We report here results on the study of the totally asymmetric simple exclusion process, defined on an open network, consisting of head and tail simple-chain segments with a double-chain section inserted in between. Results of numerical simulations for relatively short chains reveal an interesting feature of the network. When the current through the system takes its maximum value, a simple translation of the double-chain section forward or backward along the network leads to a sharp change in the shape of the density profiles in the parallel chains, thus affecting the total number of particles in that part of the network. In the symmetric case of equal injection and ejection rates α=β&gt;1/2 and equal lengths of the head and tail sections, the density profiles in the two parallel chains are almost linear, characteristic of the coexistence line (shock phase). Upon moving the section forward (backward), their shape changes to the one typical for the high- (low-) density phases of a simple chain. The total bulk density of particles in a section with a large number of parallel chains is evaluated too. The observed effect might have interesting implications for the traffic flow control as well as for biological transport processes in living cells. An explanation of this phenomenon is offered in terms of a finite-size dependence of the effective injection and ejection rates at the ends of the double-chain section.</abstract><cop>United States</cop><pmid>23848636</pmid><doi>10.1103/PhysRevE.87.062116</doi><tpages>1</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1539-3755
ispartof Physical review. E, Statistical, nonlinear, and soft matter physics, 2013-06, Vol.87 (6), p.062116-062116, Article 062116
issn 1539-3755
1550-2376
language eng
recordid cdi_proquest_miscellaneous_1430851462
source MEDLINE; American Physical Society Journals
subjects Biological Transport - physiology
Biopolymers - metabolism
Computer Simulation
Models, Biological
Models, Chemical
Particle Size
title Position dependence of the particle density in a double-chain section of a linear network in a totally asymmetric simple exclusion process
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-29T04%3A50%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Position%20dependence%20of%20the%20particle%20density%20in%20a%20double-chain%20section%20of%20a%20linear%20network%20in%20a%20totally%20asymmetric%20simple%20exclusion%20process&rft.jtitle=Physical%20review.%20E,%20Statistical,%20nonlinear,%20and%20soft%20matter%20physics&rft.au=Pesheva,%20N%20C&rft.date=2013-06&rft.volume=87&rft.issue=6&rft.spage=062116&rft.epage=062116&rft.pages=062116-062116&rft.artnum=062116&rft.issn=1539-3755&rft.eissn=1550-2376&rft_id=info:doi/10.1103/PhysRevE.87.062116&rft_dat=%3Cproquest_cross%3E1430851462%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1430851462&rft_id=info:pmid/23848636&rfr_iscdi=true