Analysis of the nonstructural and structural polyprotein regions, and complete genome sequences of Israel acute paralysis viruses identified from honeybees ( Apis mellifera ) in Korea
Abstract Phylogenetic trees were constructed for 24 partial nucleotide sequences of the nonstructural polyprotein (ORF1) and structural polyprotein regions (ORF2) of Korean IAPV genotypes, as well as eight previously reported IAPV sequences from various countries. Most of the Korean genotypes formed...
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| Veröffentlicht in: | Virology (New York, N.Y.) N.Y.), 2013-09, Vol.444 (1), p.211-217 |
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| creator | Reddy, Kondreddy Eswar Noh, Jin Hyeong Kim, Young-Ha Yoo, Mi Sun Doan, Huong Thi Thanh Ramya, Mummadireddy Jung, Suk-Chan Quyen, Dong Van Kang, Seung-Won |
| description | Abstract Phylogenetic trees were constructed for 24 partial nucleotide sequences of the nonstructural polyprotein (ORF1) and structural polyprotein regions (ORF2) of Korean IAPV genotypes, as well as eight previously reported IAPV sequences from various countries. Most of the Korean genotypes formed a distinct cluster, separate from other country genotypes. To investigate this phenomenon in more detail, three complete IAPV genome sequences were identified from different regions in Korea, i.e., Korea1, Korea2, and Korea3. These sequences were aligned with eight previously reported complete genome sequences and various genome regions were compared. The Korean IAPVs were very similar to those from China and Israel, but highly diverged from USA and Australian genotypes. Interestingly, they showed greater variability than the USA and Australian genotypes in ORF1, but highly similar to the Australian genotype in the ORF2 region. Thus, genetic recombination may account for the spatial distance between the Korean IAPV genotypes and those from other countries. |
| doi_str_mv | 10.1016/j.virol.2013.06.012 |
| format | Article |
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Most of the Korean genotypes formed a distinct cluster, separate from other country genotypes. To investigate this phenomenon in more detail, three complete IAPV genome sequences were identified from different regions in Korea, i.e., Korea1, Korea2, and Korea3. These sequences were aligned with eight previously reported complete genome sequences and various genome regions were compared. The Korean IAPVs were very similar to those from China and Israel, but highly diverged from USA and Australian genotypes. Interestingly, they showed greater variability than the USA and Australian genotypes in ORF1, but highly similar to the Australian genotype in the ORF2 region. Thus, genetic recombination may account for the spatial distance between the Korean IAPV genotypes and those from other countries.</description><identifier>ISSN: 0042-6822</identifier><identifier>EISSN: 1096-0341</identifier><identifier>DOI: 10.1016/j.virol.2013.06.012</identifier><identifier>PMID: 23886494</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Animals ; Apis mellifera ; Bees - virology ; Cluster Analysis ; Dicistroviridae - genetics ; Dicistroviridae - isolation & purification ; Genome, Viral ; Genotype ; Honeybee ; Infectious Disease ; Israel acute paralysis virus ; Korea ; Molecular Sequence Data ; Phylogenetic tree ; Phylogeography ; Polyproteins - genetics ; Recombination, Genetic ; RNA, Viral - genetics ; Sequence Analysis, DNA ; Viral Nonstructural Proteins - genetics ; Viral Structural Proteins - genetics</subject><ispartof>Virology (New York, N.Y.), 2013-09, Vol.444 (1), p.211-217</ispartof><rights>Elsevier Inc.</rights><rights>2013 Elsevier Inc.</rights><rights>Copyright © 2013 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c480t-1a929a8be1dbb4b130e22de7408be392417a51735f82dc4f71175e298448ff7b3</citedby><cites>FETCH-LOGICAL-c480t-1a929a8be1dbb4b130e22de7408be392417a51735f82dc4f71175e298448ff7b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.virol.2013.06.012$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,778,782,3539,27907,27908,45978</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23886494$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Reddy, Kondreddy Eswar</creatorcontrib><creatorcontrib>Noh, Jin Hyeong</creatorcontrib><creatorcontrib>Kim, Young-Ha</creatorcontrib><creatorcontrib>Yoo, Mi Sun</creatorcontrib><creatorcontrib>Doan, Huong Thi Thanh</creatorcontrib><creatorcontrib>Ramya, Mummadireddy</creatorcontrib><creatorcontrib>Jung, Suk-Chan</creatorcontrib><creatorcontrib>Quyen, Dong Van</creatorcontrib><creatorcontrib>Kang, Seung-Won</creatorcontrib><title>Analysis of the nonstructural and structural polyprotein regions, and complete genome sequences of Israel acute paralysis viruses identified from honeybees ( Apis mellifera ) in Korea</title><title>Virology (New York, N.Y.)</title><addtitle>Virology</addtitle><description>Abstract Phylogenetic trees were constructed for 24 partial nucleotide sequences of the nonstructural polyprotein (ORF1) and structural polyprotein regions (ORF2) of Korean IAPV genotypes, as well as eight previously reported IAPV sequences from various countries. Most of the Korean genotypes formed a distinct cluster, separate from other country genotypes. To investigate this phenomenon in more detail, three complete IAPV genome sequences were identified from different regions in Korea, i.e., Korea1, Korea2, and Korea3. These sequences were aligned with eight previously reported complete genome sequences and various genome regions were compared. The Korean IAPVs were very similar to those from China and Israel, but highly diverged from USA and Australian genotypes. Interestingly, they showed greater variability than the USA and Australian genotypes in ORF1, but highly similar to the Australian genotype in the ORF2 region. Thus, genetic recombination may account for the spatial distance between the Korean IAPV genotypes and those from other countries.</description><subject>Animals</subject><subject>Apis mellifera</subject><subject>Bees - virology</subject><subject>Cluster Analysis</subject><subject>Dicistroviridae - genetics</subject><subject>Dicistroviridae - isolation & purification</subject><subject>Genome, Viral</subject><subject>Genotype</subject><subject>Honeybee</subject><subject>Infectious Disease</subject><subject>Israel acute paralysis virus</subject><subject>Korea</subject><subject>Molecular Sequence Data</subject><subject>Phylogenetic tree</subject><subject>Phylogeography</subject><subject>Polyproteins - genetics</subject><subject>Recombination, Genetic</subject><subject>RNA, Viral - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Viral Nonstructural Proteins - genetics</subject><subject>Viral Structural Proteins - genetics</subject><issn>0042-6822</issn><issn>1096-0341</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkk1v1DAQhiMEokvhFyAhH4tEgr82HweQVhW0FZU4AGfLcSatF8cOdlIpv4y_x2R3QYgLJ2vsZ-ad8TtZ9pLRglFWvt0XDzYGV3DKREHLgjL-KNsw2pQ5FZI9zjaUSp6XNedn2bOU9hTjqqJPszMu6rqUjdxkP3deuyXZREJPpnsgPvg0xdlMc9SOaN-Rv8IxuGWMYQLrSYQ7i-ybA2PCMDqYgNyBDwOQBD9m8AYOZW9S1IC1zIzAqONJELufExK2Az_Z3kJH-hgGch88LC3gywXZjQgO4JztIWrymqDwpxBBP8-e9NoleHE6z7NvHz98vbzObz9f3VzubnMjazrlTDe80XULrGtb2TJBgfMOKknxTjRcskpvWSW2fc07I_uKsWoLvKmlrPu-asV5dnGsi2PjSGlSg00GG9IewpwUk7zmZbOtJaLiiJoYUorQqzHaQcdFMapWx9ReHRxTq2OKlgodw6xXJ4G5HaD7k_PbIgTeHQHAMR8sRJWMXf-2sxHMpLpg_yPw_p9846y3RrvvsEDahzniCuAkKnFF1Zd1adadwb-iomSN-AX0R8Ff</recordid><startdate>20130901</startdate><enddate>20130901</enddate><creator>Reddy, Kondreddy Eswar</creator><creator>Noh, Jin Hyeong</creator><creator>Kim, Young-Ha</creator><creator>Yoo, Mi Sun</creator><creator>Doan, Huong Thi Thanh</creator><creator>Ramya, Mummadireddy</creator><creator>Jung, Suk-Chan</creator><creator>Quyen, Dong Van</creator><creator>Kang, Seung-Won</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20130901</creationdate><title>Analysis of the nonstructural and structural polyprotein regions, and complete genome sequences of Israel acute paralysis viruses identified from honeybees ( Apis mellifera ) in Korea</title><author>Reddy, Kondreddy Eswar ; Noh, Jin Hyeong ; Kim, Young-Ha ; Yoo, Mi Sun ; Doan, Huong Thi Thanh ; Ramya, Mummadireddy ; Jung, Suk-Chan ; Quyen, Dong Van ; Kang, Seung-Won</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c480t-1a929a8be1dbb4b130e22de7408be392417a51735f82dc4f71175e298448ff7b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Animals</topic><topic>Apis mellifera</topic><topic>Bees - virology</topic><topic>Cluster Analysis</topic><topic>Dicistroviridae - genetics</topic><topic>Dicistroviridae - isolation & purification</topic><topic>Genome, Viral</topic><topic>Genotype</topic><topic>Honeybee</topic><topic>Infectious Disease</topic><topic>Israel acute paralysis virus</topic><topic>Korea</topic><topic>Molecular Sequence Data</topic><topic>Phylogenetic tree</topic><topic>Phylogeography</topic><topic>Polyproteins - genetics</topic><topic>Recombination, Genetic</topic><topic>RNA, Viral - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Viral Nonstructural Proteins - genetics</topic><topic>Viral Structural Proteins - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Reddy, Kondreddy Eswar</creatorcontrib><creatorcontrib>Noh, Jin Hyeong</creatorcontrib><creatorcontrib>Kim, Young-Ha</creatorcontrib><creatorcontrib>Yoo, Mi Sun</creatorcontrib><creatorcontrib>Doan, Huong Thi Thanh</creatorcontrib><creatorcontrib>Ramya, Mummadireddy</creatorcontrib><creatorcontrib>Jung, Suk-Chan</creatorcontrib><creatorcontrib>Quyen, Dong Van</creatorcontrib><creatorcontrib>Kang, Seung-Won</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Virology (New York, N.Y.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Reddy, Kondreddy Eswar</au><au>Noh, Jin Hyeong</au><au>Kim, Young-Ha</au><au>Yoo, Mi Sun</au><au>Doan, Huong Thi Thanh</au><au>Ramya, Mummadireddy</au><au>Jung, Suk-Chan</au><au>Quyen, Dong Van</au><au>Kang, Seung-Won</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis of the nonstructural and structural polyprotein regions, and complete genome sequences of Israel acute paralysis viruses identified from honeybees ( Apis mellifera ) in Korea</atitle><jtitle>Virology (New York, N.Y.)</jtitle><addtitle>Virology</addtitle><date>2013-09-01</date><risdate>2013</risdate><volume>444</volume><issue>1</issue><spage>211</spage><epage>217</epage><pages>211-217</pages><issn>0042-6822</issn><eissn>1096-0341</eissn><abstract>Abstract Phylogenetic trees were constructed for 24 partial nucleotide sequences of the nonstructural polyprotein (ORF1) and structural polyprotein regions (ORF2) of Korean IAPV genotypes, as well as eight previously reported IAPV sequences from various countries. Most of the Korean genotypes formed a distinct cluster, separate from other country genotypes. To investigate this phenomenon in more detail, three complete IAPV genome sequences were identified from different regions in Korea, i.e., Korea1, Korea2, and Korea3. These sequences were aligned with eight previously reported complete genome sequences and various genome regions were compared. The Korean IAPVs were very similar to those from China and Israel, but highly diverged from USA and Australian genotypes. Interestingly, they showed greater variability than the USA and Australian genotypes in ORF1, but highly similar to the Australian genotype in the ORF2 region. Thus, genetic recombination may account for the spatial distance between the Korean IAPV genotypes and those from other countries.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>23886494</pmid><doi>10.1016/j.virol.2013.06.012</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Animals Apis mellifera Bees - virology Cluster Analysis Dicistroviridae - genetics Dicistroviridae - isolation & purification Genome, Viral Genotype Honeybee Infectious Disease Israel acute paralysis virus Korea Molecular Sequence Data Phylogenetic tree Phylogeography Polyproteins - genetics Recombination, Genetic RNA, Viral - genetics Sequence Analysis, DNA Viral Nonstructural Proteins - genetics Viral Structural Proteins - genetics |
| title | Analysis of the nonstructural and structural polyprotein regions, and complete genome sequences of Israel acute paralysis viruses identified from honeybees ( Apis mellifera ) in Korea |
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