The assessment of genetic diversity within and among the eight subpopulations of Japanese Black cattle using 52 microsatellite markers
Japanese Black cattle are at risk for genetic homogeneity due to intensive use of a few sires. Therefore, assessment of the actual genetic diversity of this breed is important for future breeding plans. In the present study, we investigated the genetic diversity within and among eight subpopulations...
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| Veröffentlicht in: | Animal science journal 2013-08, Vol.84 (8), p.585-591 |
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| creator | Nishimaki, Takahiro Ibi, Takayuki Tanabe, Yoshihiro Miyazaki, Yoshiyuki Kobayashi, Naohiko Matsuhashi, Tamako Akiyama, Takayuki Yoshida, Emi Imai, Kazumi Matsui, Mayu Uemura, Keiichi Watanabe, Naoto Fujita, Tatsuo Saito, Yosuke Komatsu, Tomohiko Yamada, Takahisa Mannen, Hideyuki Sasazaki, Shinji Kunieda, Tetsuo |
| description | Japanese Black cattle are at risk for genetic homogeneity due to intensive use of a few sires. Therefore, assessment of the actual genetic diversity of this breed is important for future breeding plans. In the present study, we investigated the genetic diversity within and among eight subpopulations of Japanese Black cattle using 52 microsatellite markers. The parameters for genetic diversity of Japanese Black cattle were comparable to those of other cattle breeds, suggesting that the relatively high genetic diversity of the breed. However, upon comparison among the eight subpopulations, the Hyogo subpopulation showed markedly low genetic diversity. The results of the pairwise FST values, phylogenetic network and structure analysis indicated that the Hyogo population has remarkably high level of genetic differentiation from other populations, while Yamagata, Niigata, Hiroshima and Kagawa populations have low levels of genetic differentiation. Furthermore, multidimensional scaling plots indicated that individuals in some subpopulations were separated from individuals in the other subpopulations. We conclude that while the overall genetic diversity of Japanese Black cattle is still maintained at a relatively high level, that of a particular subpopulation is significantly reduced, and therefore the effective population size of the breed needs to be controlled by correct mating strategies. |
| doi_str_mv | 10.1111/asj.12045 |
| format | Article |
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Therefore, assessment of the actual genetic diversity of this breed is important for future breeding plans. In the present study, we investigated the genetic diversity within and among eight subpopulations of Japanese Black cattle using 52 microsatellite markers. The parameters for genetic diversity of Japanese Black cattle were comparable to those of other cattle breeds, suggesting that the relatively high genetic diversity of the breed. However, upon comparison among the eight subpopulations, the Hyogo subpopulation showed markedly low genetic diversity. The results of the pairwise FST values, phylogenetic network and structure analysis indicated that the Hyogo population has remarkably high level of genetic differentiation from other populations, while Yamagata, Niigata, Hiroshima and Kagawa populations have low levels of genetic differentiation. Furthermore, multidimensional scaling plots indicated that individuals in some subpopulations were separated from individuals in the other subpopulations. We conclude that while the overall genetic diversity of Japanese Black cattle is still maintained at a relatively high level, that of a particular subpopulation is significantly reduced, and therefore the effective population size of the breed needs to be controlled by correct mating strategies.</description><identifier>ISSN: 1344-3941</identifier><identifier>EISSN: 1740-0929</identifier><identifier>DOI: 10.1111/asj.12045</identifier><identifier>PMID: 23607656</identifier><language>eng</language><publisher>Australia: Blackwell Publishing Ltd</publisher><subject>Animals ; Cattle ; Cattle - genetics ; Genetic diversity ; Genetic markers ; Genetic Variation ; Genotyping Techniques ; Japan ; Japanese Black cattle ; microsatellite marker ; Microsatellite Repeats</subject><ispartof>Animal science journal, 2013-08, Vol.84 (8), p.585-591</ispartof><rights>2013 Japanese Society of Animal Science</rights><rights>2013 Japanese Society of Animal Science.</rights><rights>Copyright © 2013 Japanese Society of Animal Science</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fasj.12045$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fasj.12045$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>315,781,785,1418,27929,27930,45579,45580</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23607656$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nishimaki, Takahiro</creatorcontrib><creatorcontrib>Ibi, Takayuki</creatorcontrib><creatorcontrib>Tanabe, Yoshihiro</creatorcontrib><creatorcontrib>Miyazaki, Yoshiyuki</creatorcontrib><creatorcontrib>Kobayashi, Naohiko</creatorcontrib><creatorcontrib>Matsuhashi, Tamako</creatorcontrib><creatorcontrib>Akiyama, Takayuki</creatorcontrib><creatorcontrib>Yoshida, Emi</creatorcontrib><creatorcontrib>Imai, Kazumi</creatorcontrib><creatorcontrib>Matsui, Mayu</creatorcontrib><creatorcontrib>Uemura, Keiichi</creatorcontrib><creatorcontrib>Watanabe, Naoto</creatorcontrib><creatorcontrib>Fujita, Tatsuo</creatorcontrib><creatorcontrib>Saito, Yosuke</creatorcontrib><creatorcontrib>Komatsu, Tomohiko</creatorcontrib><creatorcontrib>Yamada, Takahisa</creatorcontrib><creatorcontrib>Mannen, Hideyuki</creatorcontrib><creatorcontrib>Sasazaki, Shinji</creatorcontrib><creatorcontrib>Kunieda, Tetsuo</creatorcontrib><title>The assessment of genetic diversity within and among the eight subpopulations of Japanese Black cattle using 52 microsatellite markers</title><title>Animal science journal</title><addtitle>Animal Science Journal</addtitle><description>Japanese Black cattle are at risk for genetic homogeneity due to intensive use of a few sires. Therefore, assessment of the actual genetic diversity of this breed is important for future breeding plans. In the present study, we investigated the genetic diversity within and among eight subpopulations of Japanese Black cattle using 52 microsatellite markers. The parameters for genetic diversity of Japanese Black cattle were comparable to those of other cattle breeds, suggesting that the relatively high genetic diversity of the breed. However, upon comparison among the eight subpopulations, the Hyogo subpopulation showed markedly low genetic diversity. The results of the pairwise FST values, phylogenetic network and structure analysis indicated that the Hyogo population has remarkably high level of genetic differentiation from other populations, while Yamagata, Niigata, Hiroshima and Kagawa populations have low levels of genetic differentiation. Furthermore, multidimensional scaling plots indicated that individuals in some subpopulations were separated from individuals in the other subpopulations. We conclude that while the overall genetic diversity of Japanese Black cattle is still maintained at a relatively high level, that of a particular subpopulation is significantly reduced, and therefore the effective population size of the breed needs to be controlled by correct mating strategies.</description><subject>Animals</subject><subject>Cattle</subject><subject>Cattle - genetics</subject><subject>Genetic diversity</subject><subject>Genetic markers</subject><subject>Genetic Variation</subject><subject>Genotyping Techniques</subject><subject>Japan</subject><subject>Japanese Black cattle</subject><subject>microsatellite marker</subject><subject>Microsatellite Repeats</subject><issn>1344-3941</issn><issn>1740-0929</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkc1O3DAUha0KVCh0wQtUltiwCdixHcdLivjVFCSgmqXlSW5mPOSPXKcwL9DnrocBFvXmXsnf8T2-h5ADzo55PCcOl8c8ZVJ9IbtcS5Ywk5qt2AspE2Ek3yHfEJeMcW2Y-kp2UpExnalsl_x9XAB1iIDYQBtoV9E5tBB8QUv_Bwb0YUVffFj4lrq2pK7p2jkNUQR-vggUx1nf9WPtgu9aXMtvXO9aQKA_a1c80cKFUAMd0UedSmnji6FDF6CufQDauOEpTtkn25WrEb6_1z3y--L88ewqmdxdXp-dThIvlVCJyivncsiZcQK4LGe5MhkUYiYqUwpuhORFCUZpYFmeSpGnKXMy1rLiBVdM7JGjzbv90D2PgME2HovoJVruRrRc8pxLyVMT0cP_0GU3Dm10t6a01FxoHakf79Q4a6C0_eDjl1b2Y8MRONkAL76G1ec9Z3YdnY3R2bfo7OnDzVsTFclG4THA66ciLspmWmhlp7eXVk2nvya397m9EP8AV6-a6A</recordid><startdate>201308</startdate><enddate>201308</enddate><creator>Nishimaki, Takahiro</creator><creator>Ibi, Takayuki</creator><creator>Tanabe, Yoshihiro</creator><creator>Miyazaki, Yoshiyuki</creator><creator>Kobayashi, Naohiko</creator><creator>Matsuhashi, Tamako</creator><creator>Akiyama, Takayuki</creator><creator>Yoshida, Emi</creator><creator>Imai, Kazumi</creator><creator>Matsui, Mayu</creator><creator>Uemura, Keiichi</creator><creator>Watanabe, Naoto</creator><creator>Fujita, Tatsuo</creator><creator>Saito, Yosuke</creator><creator>Komatsu, Tomohiko</creator><creator>Yamada, Takahisa</creator><creator>Mannen, Hideyuki</creator><creator>Sasazaki, Shinji</creator><creator>Kunieda, Tetsuo</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201308</creationdate><title>The assessment of genetic diversity within and among the eight subpopulations of Japanese Black cattle using 52 microsatellite markers</title><author>Nishimaki, Takahiro ; 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Therefore, assessment of the actual genetic diversity of this breed is important for future breeding plans. In the present study, we investigated the genetic diversity within and among eight subpopulations of Japanese Black cattle using 52 microsatellite markers. The parameters for genetic diversity of Japanese Black cattle were comparable to those of other cattle breeds, suggesting that the relatively high genetic diversity of the breed. However, upon comparison among the eight subpopulations, the Hyogo subpopulation showed markedly low genetic diversity. The results of the pairwise FST values, phylogenetic network and structure analysis indicated that the Hyogo population has remarkably high level of genetic differentiation from other populations, while Yamagata, Niigata, Hiroshima and Kagawa populations have low levels of genetic differentiation. Furthermore, multidimensional scaling plots indicated that individuals in some subpopulations were separated from individuals in the other subpopulations. We conclude that while the overall genetic diversity of Japanese Black cattle is still maintained at a relatively high level, that of a particular subpopulation is significantly reduced, and therefore the effective population size of the breed needs to be controlled by correct mating strategies.</abstract><cop>Australia</cop><pub>Blackwell Publishing Ltd</pub><pmid>23607656</pmid><doi>10.1111/asj.12045</doi><tpages>7</tpages></addata></record> |
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| source | MEDLINE; Access via Wiley Online Library; Alma/SFX Local Collection |
| subjects | Animals Cattle Cattle - genetics Genetic diversity Genetic markers Genetic Variation Genotyping Techniques Japan Japanese Black cattle microsatellite marker Microsatellite Repeats |
| title | The assessment of genetic diversity within and among the eight subpopulations of Japanese Black cattle using 52 microsatellite markers |
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