A proposed model for the flowering signaling pathway of sugarcane under photoperiodic control
Molecular analysis of floral induction in Arabidopsis has identified several flowering time genes related to 4 response networks defined by the autonomous, gibberellin, photoperiod, and vernalization pathways. Although grass flowering processes include ancestral functions shared by both mono- and di...
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Veröffentlicht in: | Genetics and molecular research 2013-04, Vol.12 (2), p.1347-1359 |
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creator | Coelho, C P Costa Netto, A P Colasanti, J Chalfun-Júnior, A |
description | Molecular analysis of floral induction in Arabidopsis has identified several flowering time genes related to 4 response networks defined by the autonomous, gibberellin, photoperiod, and vernalization pathways. Although grass flowering processes include ancestral functions shared by both mono- and dicots, they have developed their own mechanisms to transmit floral induction signals. Despite its high production capacity and its important role in biofuel production, almost no information is available about the flowering process in sugarcane. We searched the Sugarcane Expressed Sequence Tags database to look for elements of the flowering signaling pathway under photoperiodic control. Sequences showing significant similarity to flowering time genes of other species were clustered, annotated, and analyzed for conserved domains. Multiple alignments comparing the sequences found in the sugarcane database and those from other species were performed and their phylogenetic relationship assessed using the MEGA 4.0 software. Electronic Northerns were run with Cluster and TreeView programs, allowing us to identify putative members of the photoperiod-controlled flowering pathway of sugarcane. |
doi_str_mv | 10.4238/2013.April.25.6 |
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Electronic Northerns were run with Cluster and TreeView programs, allowing us to identify putative members of the photoperiod-controlled flowering pathway of sugarcane.</description><subject>Arabidopsis</subject><subject>Biofuels</subject><subject>Databases, Genetic</subject><subject>Expressed Sequence Tags</subject><subject>Flowers - genetics</subject><subject>Flowers - metabolism</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes, Plant</subject><subject>Photoperiod</subject><subject>Phylogeny</subject><subject>Saccharum - genetics</subject><subject>Saccharum - metabolism</subject><subject>Signal Transduction</subject><issn>1676-5680</issn><issn>1676-5680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkD1PwzAYhC0EolCY2ZBHlqT-djJWFV9SJRYYkeXYThvkxsFOVPXfk9KCGJneG-5O9z4A3GCUM0KLGUGY5vMuNj4nPBcn4AILKTIuCnT6R0_AZUofCBHOCnQOJoQKgRkvLsD7HHYxdCE5CzfBOg_rEGG_drD2Yeti065galat9nvV6X691TsYapiGlY5Gtw4OrXURduvQh24MBNsYaELbx-CvwFmtfXLXxzsFbw_3r4unbPny-LyYLzNDJe4zipjBDBGpTWVLVzpbWy7rcWvJjS5lyQTmgmFhDTW8IJZzxiSuZFFpyzGnU3B36B1_-Rxc6tWmScZ5P-4LQ1KYSoIEFpj8w8qxQBKXaLTODlYTQ0rR1WoEvdFxpzBSe_xqj19941eEKzEmbo_lQ7Vx9tf_w5t-AeU-gZU</recordid><startdate>20130425</startdate><enddate>20130425</enddate><creator>Coelho, C P</creator><creator>Costa Netto, A P</creator><creator>Colasanti, J</creator><creator>Chalfun-Júnior, A</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20130425</creationdate><title>A proposed model for the flowering signaling pathway of sugarcane under photoperiodic control</title><author>Coelho, C P ; Costa Netto, A P ; Colasanti, J ; Chalfun-Júnior, A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c371t-304c14027acbd9e9edfd57f48095ca97946156416dc3c582d554471b78bad5153</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Arabidopsis</topic><topic>Biofuels</topic><topic>Databases, Genetic</topic><topic>Expressed Sequence Tags</topic><topic>Flowers - genetics</topic><topic>Flowers - metabolism</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes, Plant</topic><topic>Photoperiod</topic><topic>Phylogeny</topic><topic>Saccharum - genetics</topic><topic>Saccharum - metabolism</topic><topic>Signal Transduction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Coelho, C P</creatorcontrib><creatorcontrib>Costa Netto, A P</creatorcontrib><creatorcontrib>Colasanti, J</creatorcontrib><creatorcontrib>Chalfun-Júnior, A</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Genetics and molecular research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Coelho, C P</au><au>Costa Netto, A P</au><au>Colasanti, J</au><au>Chalfun-Júnior, A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A proposed model for the flowering signaling pathway of sugarcane under photoperiodic control</atitle><jtitle>Genetics and molecular research</jtitle><addtitle>Genet Mol Res</addtitle><date>2013-04-25</date><risdate>2013</risdate><volume>12</volume><issue>2</issue><spage>1347</spage><epage>1359</epage><pages>1347-1359</pages><issn>1676-5680</issn><eissn>1676-5680</eissn><abstract>Molecular analysis of floral induction in Arabidopsis has identified several flowering time genes related to 4 response networks defined by the autonomous, gibberellin, photoperiod, and vernalization pathways. Although grass flowering processes include ancestral functions shared by both mono- and dicots, they have developed their own mechanisms to transmit floral induction signals. Despite its high production capacity and its important role in biofuel production, almost no information is available about the flowering process in sugarcane. We searched the Sugarcane Expressed Sequence Tags database to look for elements of the flowering signaling pathway under photoperiodic control. Sequences showing significant similarity to flowering time genes of other species were clustered, annotated, and analyzed for conserved domains. Multiple alignments comparing the sequences found in the sugarcane database and those from other species were performed and their phylogenetic relationship assessed using the MEGA 4.0 software. 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subjects | Arabidopsis Biofuels Databases, Genetic Expressed Sequence Tags Flowers - genetics Flowers - metabolism Gene Expression Profiling Gene Expression Regulation, Plant Genes, Plant Photoperiod Phylogeny Saccharum - genetics Saccharum - metabolism Signal Transduction |
title | A proposed model for the flowering signaling pathway of sugarcane under photoperiodic control |
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