Genetic relatedness of Mycobacterium avium-intracellulare complex isolates from patients with pulmonary MAC disease and their residential soils
Mycobacterium avium-intracellulare complex (MAC) strains were recovered from 48.9% of residential soil samples (agricultural farms (n = 7), residential yards (n = 79), and planting pots (n = 49)) of 100 pulmonary MAC patients and 35 non-infected control patients. The frequency of MAC recovery did no...
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| Veröffentlicht in: | Clinical microbiology and infection 2013-06, Vol.19 (6), p.537-541 |
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| creator | Fujita, K. Ito, Y. Hirai, T. Maekawa, K. Imai, S. Tatsumi, S. Niimi, A. Iinuma, Y. Ichiyama, S. Mishima, M. |
| description | Mycobacterium avium-intracellulare complex (MAC) strains were recovered from 48.9% of residential soil samples (agricultural farms (n = 7), residential yards (n = 79), and planting pots (n = 49)) of 100 pulmonary MAC patients and 35 non-infected control patients. The frequency of MAC recovery did not differ among soil types or among patients regardless of the presence of pulmonary MAC disease, infecting MAC species or period of soil exposure. Variable numbers of tandem repeats (VNTR) analysis for MAC clinical and soil isolates revealed 78 different patterns in 47 M. avium clinical isolates and 41 soil isolates, and 53 different patterns in 18 M. intracellulare clinical isolates and 37 soil isolates. Six clinical and corresponding soil isolate pairs with an identical VNTR genotype were from case patients with high soil exposure (≥2 h per week, 37.5% (6/16) with high exposure compared with 0.0% (0/19) with low or no exposure, p |
| doi_str_mv | 10.1111/j.1469-0691.2012.03929.x |
| format | Article |
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The frequency of MAC recovery did not differ among soil types or among patients regardless of the presence of pulmonary MAC disease, infecting MAC species or period of soil exposure. Variable numbers of tandem repeats (VNTR) analysis for MAC clinical and soil isolates revealed 78 different patterns in 47 M. avium clinical isolates and 41 soil isolates, and 53 different patterns in 18 M. intracellulare clinical isolates and 37 soil isolates. Six clinical and corresponding soil isolate pairs with an identical VNTR genotype were from case patients with high soil exposure (≥2 h per week, 37.5% (6/16) with high exposure compared with 0.0% (0/19) with low or no exposure, p <0.01), suggesting that residential soils are a likely source of pulmonary MAC infection.</description><identifier>ISSN: 1198-743X</identifier><identifier>EISSN: 1469-0691</identifier><identifier>DOI: 10.1111/j.1469-0691.2012.03929.x</identifier><identifier>PMID: 22712883</identifier><language>eng</language><publisher>Oxford, UK: Elsevier Ltd</publisher><subject>Adolescent ; Adult ; Case-Control Studies ; Child ; Child, Preschool ; Clinical isolates ; DNA, Bacterial ; environmental exposure ; Genotype ; Humans ; Lung Diseases - microbiology ; Middle Aged ; Minisatellite Repeats ; Mycobacterium avium ; Mycobacterium avium Complex - classification ; Mycobacterium avium Complex - genetics ; Mycobacterium avium Complex - isolation & purification ; Mycobacterium avium-intracellulare complex ; Mycobacterium avium-intracellulare Infection - microbiology ; Mycobacterium avium-intracellulare Infection - transmission ; Phylogeny ; soil ; Soil Microbiology ; variable numbers of tandem repeats ; Young Adult</subject><ispartof>Clinical microbiology and infection, 2013-06, Vol.19 (6), p.537-541</ispartof><rights>2013 European Society of Clinical Microbiology and Infectious Diseases</rights><rights>2012 The Authors. Clinical Microbiology and Infection © 2012 European Society of Clinical Microbiology and Infectious Diseases</rights><rights>2012 The Authors. Clinical Microbiology and Infection © 2012 European Society of Clinical Microbiology and Infectious Diseases.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5399-d396404f2536d67e4bed7aa80556db26408dc70176f1020a937ed7a9e282c1c63</citedby><cites>FETCH-LOGICAL-c5399-d396404f2536d67e4bed7aa80556db26408dc70176f1020a937ed7a9e282c1c63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1469-0691.2012.03929.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1469-0691.2012.03929.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22712883$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fujita, K.</creatorcontrib><creatorcontrib>Ito, Y.</creatorcontrib><creatorcontrib>Hirai, T.</creatorcontrib><creatorcontrib>Maekawa, K.</creatorcontrib><creatorcontrib>Imai, S.</creatorcontrib><creatorcontrib>Tatsumi, S.</creatorcontrib><creatorcontrib>Niimi, A.</creatorcontrib><creatorcontrib>Iinuma, Y.</creatorcontrib><creatorcontrib>Ichiyama, S.</creatorcontrib><creatorcontrib>Mishima, M.</creatorcontrib><title>Genetic relatedness of Mycobacterium avium-intracellulare complex isolates from patients with pulmonary MAC disease and their residential soils</title><title>Clinical microbiology and infection</title><addtitle>Clin Microbiol Infect</addtitle><description>Mycobacterium avium-intracellulare complex (MAC) strains were recovered from 48.9% of residential soil samples (agricultural farms (n = 7), residential yards (n = 79), and planting pots (n = 49)) of 100 pulmonary MAC patients and 35 non-infected control patients. The frequency of MAC recovery did not differ among soil types or among patients regardless of the presence of pulmonary MAC disease, infecting MAC species or period of soil exposure. Variable numbers of tandem repeats (VNTR) analysis for MAC clinical and soil isolates revealed 78 different patterns in 47 M. avium clinical isolates and 41 soil isolates, and 53 different patterns in 18 M. intracellulare clinical isolates and 37 soil isolates. Six clinical and corresponding soil isolate pairs with an identical VNTR genotype were from case patients with high soil exposure (≥2 h per week, 37.5% (6/16) with high exposure compared with 0.0% (0/19) with low or no exposure, p <0.01), suggesting that residential soils are a likely source of pulmonary MAC infection.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Case-Control Studies</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Clinical isolates</subject><subject>DNA, Bacterial</subject><subject>environmental exposure</subject><subject>Genotype</subject><subject>Humans</subject><subject>Lung Diseases - microbiology</subject><subject>Middle Aged</subject><subject>Minisatellite Repeats</subject><subject>Mycobacterium avium</subject><subject>Mycobacterium avium Complex - classification</subject><subject>Mycobacterium avium Complex - genetics</subject><subject>Mycobacterium avium Complex - isolation & purification</subject><subject>Mycobacterium avium-intracellulare complex</subject><subject>Mycobacterium avium-intracellulare Infection - microbiology</subject><subject>Mycobacterium avium-intracellulare Infection - transmission</subject><subject>Phylogeny</subject><subject>soil</subject><subject>Soil Microbiology</subject><subject>variable numbers of tandem repeats</subject><subject>Young Adult</subject><issn>1198-743X</issn><issn>1469-0691</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkctu1DAUhiMEoqXwCsgSGzZJfYmdeMGijKBUmhEbkNhZHvtE9ciJB9tpZ56CV8ZhShdsqBf2kc73n4v_qkIEN6Scy11DWiFrLCRpKCa0wUxS2RyeVeePieclJrKvu5b9OKtepbTDGFPG2pfVGaUdoX3Pzqtf1zBBdgZF8DqDnSAlFAa0OZqw1SZDdPOI9F25azflqA14P3sdAZkw7j0ckEthkSY0xDCivc4OppzQvcu3aD_7MUw6HtHmaoWsS6ATID1ZlG_BxdI1OVtwpz1Kwfn0unoxaJ_gzcN7UX3__Onb6ku9_np9s7pa14YzKWvLpGhxO1DOhBUdtFuwndY95lzYLS253poOk04MBFOsJesWQALtqSFGsIvq_anuPoafM6SsRpeW3fQEYU6KMNG1PeeyewLack5Iixf03T_oLsxxKosowqkUZfaeF6o_USaGlCIMah_dWD5JEawWf9VOLTaqxUa1-Kv--KsORfr2ocG8HcE-Cv8aWoAPJ-DeeTg-ubBarTdLVPQfT3oon3_nIKpkip8GrItgsrLB_X_K39n9yss</recordid><startdate>201306</startdate><enddate>201306</enddate><creator>Fujita, K.</creator><creator>Ito, Y.</creator><creator>Hirai, T.</creator><creator>Maekawa, K.</creator><creator>Imai, S.</creator><creator>Tatsumi, S.</creator><creator>Niimi, A.</creator><creator>Iinuma, Y.</creator><creator>Ichiyama, S.</creator><creator>Mishima, M.</creator><general>Elsevier Ltd</general><general>Blackwell Publishing Ltd</general><general>Elsevier Limited</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7U9</scope><scope>C1K</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>201306</creationdate><title>Genetic relatedness of Mycobacterium avium-intracellulare complex isolates from patients with pulmonary MAC disease and their residential soils</title><author>Fujita, K. ; Ito, Y. ; Hirai, T. ; Maekawa, K. ; Imai, S. ; Tatsumi, S. ; Niimi, A. ; Iinuma, Y. ; Ichiyama, S. ; Mishima, M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5399-d396404f2536d67e4bed7aa80556db26408dc70176f1020a937ed7a9e282c1c63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Case-Control Studies</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>Clinical isolates</topic><topic>DNA, Bacterial</topic><topic>environmental exposure</topic><topic>Genotype</topic><topic>Humans</topic><topic>Lung Diseases - microbiology</topic><topic>Middle Aged</topic><topic>Minisatellite Repeats</topic><topic>Mycobacterium avium</topic><topic>Mycobacterium avium Complex - classification</topic><topic>Mycobacterium avium Complex - genetics</topic><topic>Mycobacterium avium Complex - isolation & purification</topic><topic>Mycobacterium avium-intracellulare complex</topic><topic>Mycobacterium avium-intracellulare Infection - microbiology</topic><topic>Mycobacterium avium-intracellulare Infection - transmission</topic><topic>Phylogeny</topic><topic>soil</topic><topic>Soil Microbiology</topic><topic>variable numbers of tandem repeats</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fujita, K.</creatorcontrib><creatorcontrib>Ito, Y.</creatorcontrib><creatorcontrib>Hirai, T.</creatorcontrib><creatorcontrib>Maekawa, K.</creatorcontrib><creatorcontrib>Imai, S.</creatorcontrib><creatorcontrib>Tatsumi, S.</creatorcontrib><creatorcontrib>Niimi, A.</creatorcontrib><creatorcontrib>Iinuma, Y.</creatorcontrib><creatorcontrib>Ichiyama, S.</creatorcontrib><creatorcontrib>Mishima, M.</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Clinical microbiology and infection</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fujita, K.</au><au>Ito, Y.</au><au>Hirai, T.</au><au>Maekawa, K.</au><au>Imai, S.</au><au>Tatsumi, S.</au><au>Niimi, A.</au><au>Iinuma, Y.</au><au>Ichiyama, S.</au><au>Mishima, M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic relatedness of Mycobacterium avium-intracellulare complex isolates from patients with pulmonary MAC disease and their residential soils</atitle><jtitle>Clinical microbiology and infection</jtitle><addtitle>Clin Microbiol Infect</addtitle><date>2013-06</date><risdate>2013</risdate><volume>19</volume><issue>6</issue><spage>537</spage><epage>541</epage><pages>537-541</pages><issn>1198-743X</issn><eissn>1469-0691</eissn><abstract>Mycobacterium avium-intracellulare complex (MAC) strains were recovered from 48.9% of residential soil samples (agricultural farms (n = 7), residential yards (n = 79), and planting pots (n = 49)) of 100 pulmonary MAC patients and 35 non-infected control patients. The frequency of MAC recovery did not differ among soil types or among patients regardless of the presence of pulmonary MAC disease, infecting MAC species or period of soil exposure. Variable numbers of tandem repeats (VNTR) analysis for MAC clinical and soil isolates revealed 78 different patterns in 47 M. avium clinical isolates and 41 soil isolates, and 53 different patterns in 18 M. intracellulare clinical isolates and 37 soil isolates. Six clinical and corresponding soil isolate pairs with an identical VNTR genotype were from case patients with high soil exposure (≥2 h per week, 37.5% (6/16) with high exposure compared with 0.0% (0/19) with low or no exposure, p <0.01), suggesting that residential soils are a likely source of pulmonary MAC infection.</abstract><cop>Oxford, UK</cop><pub>Elsevier Ltd</pub><pmid>22712883</pmid><doi>10.1111/j.1469-0691.2012.03929.x</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection; Wiley Blackwell Journals |
| subjects | Adolescent Adult Case-Control Studies Child Child, Preschool Clinical isolates DNA, Bacterial environmental exposure Genotype Humans Lung Diseases - microbiology Middle Aged Minisatellite Repeats Mycobacterium avium Mycobacterium avium Complex - classification Mycobacterium avium Complex - genetics Mycobacterium avium Complex - isolation & purification Mycobacterium avium-intracellulare complex Mycobacterium avium-intracellulare Infection - microbiology Mycobacterium avium-intracellulare Infection - transmission Phylogeny soil Soil Microbiology variable numbers of tandem repeats Young Adult |
| title | Genetic relatedness of Mycobacterium avium-intracellulare complex isolates from patients with pulmonary MAC disease and their residential soils |
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