Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae
Three Gram-negative strains, NF 1078T, NF 1598 and NF 1715, were isolated from clinical (two) and environmental (one) samples, respectively. Sequence analysis of the 16S rRNA genes revealed similarity of 100 % among the three strains and next highest similarity to the type strain of Acidovorax avena...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2013-06, Vol.63 (Pt 6), p.2203-2206 |
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| container_issue | Pt 6 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Vaneechoutte, Mario Janssens, Michèle Avesani, Véronique Delmée, Michel Deschaght, Pieter |
| description | Three Gram-negative strains, NF 1078T, NF 1598 and NF 1715, were isolated from clinical (two) and environmental (one) samples, respectively. Sequence analysis of the 16S rRNA genes revealed similarity of 100 % among the three strains and next highest similarity to the type strain of Acidovorax avenae (98.16 %). The three strains were able to acidify lactose and rhamnose on low peptone phenol red agar and to alkalinize citrate on Simmons’ agar and were negative for nitrate reduction. The DNA G+C content of strain NF 1078T was 67.1 mol%. The level of DNA–DNA relatedness between this strain and the type strains of A. avenae (ATCC 19860T, LMG 2117T) was 29 %. Based on these phylogenetic, phenotypic and genotypic analyses, the three strains could be distinguished clearly from all other recognized Acidovorax species and should be classified as representatives of a novel species of the genus Acidovorax, for which the name Acidovorax wautersii sp. nov. is proposed. The type strain is NF 1078T ( = LMG 26971T = CCUG 62584T). |
| doi_str_mv | 10.1099/ijs.0.046102-0 |
| format | Article |
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Sequence analysis of the 16S rRNA genes revealed similarity of 100 % among the three strains and next highest similarity to the type strain of Acidovorax avenae (98.16 %). The three strains were able to acidify lactose and rhamnose on low peptone phenol red agar and to alkalinize citrate on Simmons’ agar and were negative for nitrate reduction. The DNA G+C content of strain NF 1078T was 67.1 mol%. The level of DNA–DNA relatedness between this strain and the type strains of A. avenae (ATCC 19860T, LMG 2117T) was 29 %. Based on these phylogenetic, phenotypic and genotypic analyses, the three strains could be distinguished clearly from all other recognized Acidovorax species and should be classified as representatives of a novel species of the genus Acidovorax, for which the name Acidovorax wautersii sp. nov. is proposed. The type strain is NF 1078T ( = LMG 26971T = CCUG 62584T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.046102-0</identifier><identifier>PMID: 23148096</identifier><language>eng</language><publisher>England: International Union of Microbiological Societies</publisher><subject>Acidovorax avenae ; agar ; Bacterial Typing Techniques ; Base Composition ; citrates ; Comamonadaceae - classification ; Comamonadaceae - genetics ; Comamonadaceae - isolation & purification ; DNA ; DNA, Bacterial - genetics ; genes ; Genotype ; Humans ; lactose ; microbiology ; Molecular Sequence Data ; nitrate reduction ; Nucleic Acid Hybridization ; phenol ; Phenotype ; Phylogeny ; rhamnose ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; sequence analysis ; Sequence Analysis, DNA ; Species Specificity</subject><ispartof>International journal of systematic and evolutionary microbiology, 2013-06, Vol.63 (Pt 6), p.2203-2206</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c385t-cf879241388fe4c503031cdb793924b49292d7165badd7002f0c999c10848223</citedby><cites>FETCH-LOGICAL-c385t-cf879241388fe4c503031cdb793924b49292d7165badd7002f0c999c10848223</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23148096$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vaneechoutte, Mario</creatorcontrib><creatorcontrib>Janssens, Michèle</creatorcontrib><creatorcontrib>Avesani, Véronique</creatorcontrib><creatorcontrib>Delmée, Michel</creatorcontrib><creatorcontrib>Deschaght, Pieter</creatorcontrib><title>Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Three Gram-negative strains, NF 1078T, NF 1598 and NF 1715, were isolated from clinical (two) and environmental (one) samples, respectively. Sequence analysis of the 16S rRNA genes revealed similarity of 100 % among the three strains and next highest similarity to the type strain of Acidovorax avenae (98.16 %). The three strains were able to acidify lactose and rhamnose on low peptone phenol red agar and to alkalinize citrate on Simmons’ agar and were negative for nitrate reduction. The DNA G+C content of strain NF 1078T was 67.1 mol%. The level of DNA–DNA relatedness between this strain and the type strains of A. avenae (ATCC 19860T, LMG 2117T) was 29 %. Based on these phylogenetic, phenotypic and genotypic analyses, the three strains could be distinguished clearly from all other recognized Acidovorax species and should be classified as representatives of a novel species of the genus Acidovorax, for which the name Acidovorax wautersii sp. nov. is proposed. The type strain is NF 1078T ( = LMG 26971T = CCUG 62584T).</description><subject>Acidovorax avenae</subject><subject>agar</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>citrates</subject><subject>Comamonadaceae - classification</subject><subject>Comamonadaceae - genetics</subject><subject>Comamonadaceae - isolation & purification</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>genes</subject><subject>Genotype</subject><subject>Humans</subject><subject>lactose</subject><subject>microbiology</subject><subject>Molecular Sequence Data</subject><subject>nitrate reduction</subject><subject>Nucleic Acid Hybridization</subject><subject>phenol</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>rhamnose</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Species Specificity</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkctOHDEQRa0IFB7JNkvwMgu6U370w0tEIEFCYpHJ2vLY7sio2x5cPUP4EP4Xj2YSWJRcuj51S_Yl5AuDmoFS38ID1lCDbBnwCj6QYybbtmpAyIN3_RE5QXwAKALAR3LEBZM9qPaYvHz3aHNYzSFFmgZ6aYNLm5TNX_pk1rPPGALFVU1j2tR0TtRYm6YpOTN7ascQgzUjDZjGIiA10ZWiPm5CTnHycX67vaBTwrkMJfTjM81-K7qt57ulZuOj8Z_I4WBG9J_35ylZ3Fwvrn5Wd_c_bq8u7yor-mau7NB3iksm-n7w0paXgmDWLTsliryUiivuOtY2S-NcB8AHsEopy6CXPefilHzd2a5yelx7nPUU0PpxNNGnNWom2rbpOpBNQesdanNCzH7Qqxwmk581A71NQpckNOhdEhrKwNnee72cvPuP__v6ApzvgMEkbf7kgPr3Lw6s2cYkVN-JV7aOj38</recordid><startdate>20130601</startdate><enddate>20130601</enddate><creator>Vaneechoutte, Mario</creator><creator>Janssens, Michèle</creator><creator>Avesani, Véronique</creator><creator>Delmée, Michel</creator><creator>Deschaght, Pieter</creator><general>International Union of Microbiological Societies</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20130601</creationdate><title>Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae</title><author>Vaneechoutte, Mario ; Janssens, Michèle ; Avesani, Véronique ; Delmée, Michel ; Deschaght, Pieter</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c385t-cf879241388fe4c503031cdb793924b49292d7165badd7002f0c999c10848223</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Acidovorax avenae</topic><topic>agar</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>citrates</topic><topic>Comamonadaceae - classification</topic><topic>Comamonadaceae - genetics</topic><topic>Comamonadaceae - isolation & purification</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>genes</topic><topic>Genotype</topic><topic>Humans</topic><topic>lactose</topic><topic>microbiology</topic><topic>Molecular Sequence Data</topic><topic>nitrate reduction</topic><topic>Nucleic Acid Hybridization</topic><topic>phenol</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>rhamnose</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Species Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vaneechoutte, Mario</creatorcontrib><creatorcontrib>Janssens, Michèle</creatorcontrib><creatorcontrib>Avesani, Véronique</creatorcontrib><creatorcontrib>Delmée, Michel</creatorcontrib><creatorcontrib>Deschaght, Pieter</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vaneechoutte, Mario</au><au>Janssens, Michèle</au><au>Avesani, Véronique</au><au>Delmée, Michel</au><au>Deschaght, Pieter</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2013-06-01</date><risdate>2013</risdate><volume>63</volume><issue>Pt 6</issue><spage>2203</spage><epage>2206</epage><pages>2203-2206</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Three Gram-negative strains, NF 1078T, NF 1598 and NF 1715, were isolated from clinical (two) and environmental (one) samples, respectively. Sequence analysis of the 16S rRNA genes revealed similarity of 100 % among the three strains and next highest similarity to the type strain of Acidovorax avenae (98.16 %). The three strains were able to acidify lactose and rhamnose on low peptone phenol red agar and to alkalinize citrate on Simmons’ agar and were negative for nitrate reduction. The DNA G+C content of strain NF 1078T was 67.1 mol%. The level of DNA–DNA relatedness between this strain and the type strains of A. avenae (ATCC 19860T, LMG 2117T) was 29 %. Based on these phylogenetic, phenotypic and genotypic analyses, the three strains could be distinguished clearly from all other recognized Acidovorax species and should be classified as representatives of a novel species of the genus Acidovorax, for which the name Acidovorax wautersii sp. nov. is proposed. The type strain is NF 1078T ( = LMG 26971T = CCUG 62584T).</abstract><cop>England</cop><pub>International Union of Microbiological Societies</pub><pmid>23148096</pmid><doi>10.1099/ijs.0.046102-0</doi><tpages>4</tpages></addata></record> |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Acidovorax avenae agar Bacterial Typing Techniques Base Composition citrates Comamonadaceae - classification Comamonadaceae - genetics Comamonadaceae - isolation & purification DNA DNA, Bacterial - genetics genes Genotype Humans lactose microbiology Molecular Sequence Data nitrate reduction Nucleic Acid Hybridization phenol Phenotype Phylogeny rhamnose ribosomal RNA RNA, Ribosomal, 16S - genetics sequence analysis Sequence Analysis, DNA Species Specificity |
| title | Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae |
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