A docking-based receptor library of antibiotics and its novel application in predicting chronic mixture toxicity for environmental risk assessment
As organisms are typically exposed to chemical mixtures over long periods of time, chronic mixture toxicity is the best way to perform an environmental risk assessment (ERA). However, it is difficult to obtain the chronic mixture toxicity data due to the high expense and the complexity of the data a...
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description | As organisms are typically exposed to chemical mixtures over long periods of time, chronic mixture toxicity is the best way to perform an environmental risk assessment (ERA). However, it is difficult to obtain the chronic mixture toxicity data due to the high expense and the complexity of the data acquisition method. Therefore, an approach was proposed in this study to predict chronic mixture toxicity. The acute (15 min exposure) and chronic (24 h exposure) toxicity of eight antibiotics and trimethoprim to
Vibrio fischeri
were determined in both single and binary mixtures. The results indicated that the risk quotients (RQs) of antibiotics should be based on the chronic mixture toxicity. To predict the chronic mixture toxicity, a docking-based receptor library of antibiotics and the receptor-library-based quantitative structure–activity relationship (QSAR) model were developed. Application of the developed QSAR model to the ERA of antibiotic mixtures demonstrated that there was a close affinity between RQs based on the observed chronic toxicity and the corresponding RQs based on the predicted data. The average coefficients of variations were 46.26 and 34.93 % and the determination coefficients (
R
2
) were 0.999 and 0.998 for the low concentration group and the high concentration group, respectively. This result convinced us that the receptor library would be a promising tool for predicting the chronic mixture toxicity of antibiotics and that it can be further applied in ERA. |
doi_str_mv | 10.1007/s10661-012-2885-5 |
format | Article |
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Vibrio fischeri
were determined in both single and binary mixtures. The results indicated that the risk quotients (RQs) of antibiotics should be based on the chronic mixture toxicity. To predict the chronic mixture toxicity, a docking-based receptor library of antibiotics and the receptor-library-based quantitative structure–activity relationship (QSAR) model were developed. Application of the developed QSAR model to the ERA of antibiotic mixtures demonstrated that there was a close affinity between RQs based on the observed chronic toxicity and the corresponding RQs based on the predicted data. The average coefficients of variations were 46.26 and 34.93 % and the determination coefficients (
R
2
) were 0.999 and 0.998 for the low concentration group and the high concentration group, respectively. This result convinced us that the receptor library would be a promising tool for predicting the chronic mixture toxicity of antibiotics and that it can be further applied in ERA.</description><identifier>ISSN: 0167-6369</identifier><identifier>EISSN: 1573-2959</identifier><identifier>DOI: 10.1007/s10661-012-2885-5</identifier><identifier>PMID: 23143826</identifier><identifier>CODEN: EMASDH</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Aliivibrio fischeri ; Analysis ; Animal, plant and microbial ecology ; Anti-Bacterial Agents - classification ; Anti-Bacterial Agents - toxicity ; Antibiotics ; Applied ecology ; Atmospheric Protection/Air Quality Control/Air Pollution ; Biological and medical sciences ; Chemicals ; Chronic toxicity ; Conservation, protection and management of environment and wildlife ; Data acquisition ; Earth and Environmental Science ; Ecology ; Ecotoxicology ; Environment ; Environmental assessment ; Environmental Management ; Environmental monitoring ; Environmental Pollutants - classification ; Environmental Pollutants - toxicity ; Environmental risk ; Environmental science ; Fundamental and applied biological sciences. Psychology ; Health risk assessment ; Laboratories ; Libraries ; Molecular chemistry ; Monitoring/Environmental Analysis ; Organisms ; Pollutants ; Quantitative Structure-Activity Relationship ; Risk assessment ; Risk Assessment - methods ; Small Molecule Libraries ; Studies ; Toxicity ; Toxicity Tests, Chronic - methods ; Vibrio fischeri</subject><ispartof>Environmental monitoring and assessment, 2013-06, Vol.185 (6), p.4513-4527</ispartof><rights>Springer Science+Business Media Dordrecht 2012</rights><rights>2014 INIST-CNRS</rights><rights>Springer Science+Business Media Dordrecht 2013</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c435t-829e44b245634d58f8d5f9de25553986d6e7e604feb60b0758d08566224e993f3</citedby><cites>FETCH-LOGICAL-c435t-829e44b245634d58f8d5f9de25553986d6e7e604feb60b0758d08566224e993f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10661-012-2885-5$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10661-012-2885-5$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,778,782,27907,27908,41471,42540,51302</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=27644209$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23143826$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zou, Xiaoming</creatorcontrib><creatorcontrib>Zhou, Xianghong</creatorcontrib><creatorcontrib>Lin, Zhifen</creatorcontrib><creatorcontrib>Deng, Ziqing</creatorcontrib><creatorcontrib>Yin, Daqiang</creatorcontrib><title>A docking-based receptor library of antibiotics and its novel application in predicting chronic mixture toxicity for environmental risk assessment</title><title>Environmental monitoring and assessment</title><addtitle>Environ Monit Assess</addtitle><addtitle>Environ Monit Assess</addtitle><description>As organisms are typically exposed to chemical mixtures over long periods of time, chronic mixture toxicity is the best way to perform an environmental risk assessment (ERA). However, it is difficult to obtain the chronic mixture toxicity data due to the high expense and the complexity of the data acquisition method. Therefore, an approach was proposed in this study to predict chronic mixture toxicity. The acute (15 min exposure) and chronic (24 h exposure) toxicity of eight antibiotics and trimethoprim to
Vibrio fischeri
were determined in both single and binary mixtures. The results indicated that the risk quotients (RQs) of antibiotics should be based on the chronic mixture toxicity. To predict the chronic mixture toxicity, a docking-based receptor library of antibiotics and the receptor-library-based quantitative structure–activity relationship (QSAR) model were developed. Application of the developed QSAR model to the ERA of antibiotic mixtures demonstrated that there was a close affinity between RQs based on the observed chronic toxicity and the corresponding RQs based on the predicted data. The average coefficients of variations were 46.26 and 34.93 % and the determination coefficients (
R
2
) were 0.999 and 0.998 for the low concentration group and the high concentration group, respectively. This result convinced us that the receptor library would be a promising tool for predicting the chronic mixture toxicity of antibiotics and that it can be further applied in ERA.</description><subject>Aliivibrio fischeri</subject><subject>Analysis</subject><subject>Animal, plant and microbial ecology</subject><subject>Anti-Bacterial Agents - classification</subject><subject>Anti-Bacterial Agents - toxicity</subject><subject>Antibiotics</subject><subject>Applied ecology</subject><subject>Atmospheric Protection/Air Quality Control/Air Pollution</subject><subject>Biological and medical sciences</subject><subject>Chemicals</subject><subject>Chronic toxicity</subject><subject>Conservation, protection and management of environment and wildlife</subject><subject>Data acquisition</subject><subject>Earth and Environmental Science</subject><subject>Ecology</subject><subject>Ecotoxicology</subject><subject>Environment</subject><subject>Environmental assessment</subject><subject>Environmental Management</subject><subject>Environmental monitoring</subject><subject>Environmental Pollutants - classification</subject><subject>Environmental Pollutants - toxicity</subject><subject>Environmental risk</subject><subject>Environmental science</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Health risk assessment</subject><subject>Laboratories</subject><subject>Libraries</subject><subject>Molecular chemistry</subject><subject>Monitoring/Environmental Analysis</subject><subject>Organisms</subject><subject>Pollutants</subject><subject>Quantitative Structure-Activity Relationship</subject><subject>Risk assessment</subject><subject>Risk Assessment - methods</subject><subject>Small Molecule Libraries</subject><subject>Studies</subject><subject>Toxicity</subject><subject>Toxicity Tests, Chronic - methods</subject><subject>Vibrio fischeri</subject><issn>0167-6369</issn><issn>1573-2959</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kc1q3TAQhUVpaW7SPkA3RVAK2biVZEm2liH0DwLdtGsjS-NUiS25Gjkkr9Enri739odCVxo035w5zCHkBWdvOGPdW-RMa94wLhrR96pRj8iOq65thFHmMdkxrrtGt9qckFPEG8aY6aR5Sk5Ey2XbC70jPy6oT-42xOtmtAieZnCwlpTpHMZs8wNNE7WxhDGkEhzW2tNQkMZ0BzO16zoHZ0tIkYZI1ww-uFLVqPuWUwyOLuG-bBloSffBhfJAp6oN8S7U9gKx2JnmgLfUIgLi_ucZeTLZGeH58T0jX9-_-3L5sbn6_OHT5cVV42SrStMLA1KOQirdSq_6qfdqMh6EUqo1vfYaOtBMTjBqNrJO9Z71SmshJBjTTu0ZOT_orjl93wDLsAR0MM82Qtpw4K3SRmjdmYq--ge9SVuO1V2lZKclq9esFD9QLifEDNOw5rDUGw6cDfvAhkNgQw1s2Ac2qDrz8qi8jQv43xO_EqrA6yNg0dl5yja6gH-4ulwKtrcoDhzWVryG_JfF_27_CRE_r4g</recordid><startdate>20130601</startdate><enddate>20130601</enddate><creator>Zou, Xiaoming</creator><creator>Zhou, Xianghong</creator><creator>Lin, Zhifen</creator><creator>Deng, Ziqing</creator><creator>Yin, Daqiang</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QH</scope><scope>7QL</scope><scope>7SN</scope><scope>7ST</scope><scope>7T7</scope><scope>7TG</scope><scope>7TN</scope><scope>7U7</scope><scope>7UA</scope><scope>7WY</scope><scope>7WZ</scope><scope>7X7</scope><scope>7XB</scope><scope>87Z</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8FL</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BEZIV</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FRNLG</scope><scope>FYUFA</scope><scope>F~G</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H97</scope><scope>HCIFZ</scope><scope>K60</scope><scope>K6~</scope><scope>K9.</scope><scope>KL.</scope><scope>L.-</scope><scope>L.G</scope><scope>M0C</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>P64</scope><scope>PATMY</scope><scope>PQBIZ</scope><scope>PQBZA</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>SOI</scope><scope>7T2</scope><scope>7U1</scope><scope>7U2</scope></search><sort><creationdate>20130601</creationdate><title>A docking-based receptor library of antibiotics and its novel application in predicting chronic mixture toxicity for environmental risk assessment</title><author>Zou, Xiaoming ; Zhou, Xianghong ; Lin, Zhifen ; Deng, Ziqing ; Yin, Daqiang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c435t-829e44b245634d58f8d5f9de25553986d6e7e604feb60b0758d08566224e993f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Aliivibrio fischeri</topic><topic>Analysis</topic><topic>Animal, plant and microbial ecology</topic><topic>Anti-Bacterial Agents - classification</topic><topic>Anti-Bacterial Agents - toxicity</topic><topic>Antibiotics</topic><topic>Applied ecology</topic><topic>Atmospheric Protection/Air Quality Control/Air Pollution</topic><topic>Biological and medical sciences</topic><topic>Chemicals</topic><topic>Chronic toxicity</topic><topic>Conservation, protection and management of environment and wildlife</topic><topic>Data acquisition</topic><topic>Earth and Environmental Science</topic><topic>Ecology</topic><topic>Ecotoxicology</topic><topic>Environment</topic><topic>Environmental assessment</topic><topic>Environmental Management</topic><topic>Environmental monitoring</topic><topic>Environmental Pollutants - classification</topic><topic>Environmental Pollutants - toxicity</topic><topic>Environmental risk</topic><topic>Environmental science</topic><topic>Fundamental and applied biological sciences. 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However, it is difficult to obtain the chronic mixture toxicity data due to the high expense and the complexity of the data acquisition method. Therefore, an approach was proposed in this study to predict chronic mixture toxicity. The acute (15 min exposure) and chronic (24 h exposure) toxicity of eight antibiotics and trimethoprim to
Vibrio fischeri
were determined in both single and binary mixtures. The results indicated that the risk quotients (RQs) of antibiotics should be based on the chronic mixture toxicity. To predict the chronic mixture toxicity, a docking-based receptor library of antibiotics and the receptor-library-based quantitative structure–activity relationship (QSAR) model were developed. Application of the developed QSAR model to the ERA of antibiotic mixtures demonstrated that there was a close affinity between RQs based on the observed chronic toxicity and the corresponding RQs based on the predicted data. The average coefficients of variations were 46.26 and 34.93 % and the determination coefficients (
R
2
) were 0.999 and 0.998 for the low concentration group and the high concentration group, respectively. This result convinced us that the receptor library would be a promising tool for predicting the chronic mixture toxicity of antibiotics and that it can be further applied in ERA.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>23143826</pmid><doi>10.1007/s10661-012-2885-5</doi><tpages>15</tpages></addata></record> |
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subjects | Aliivibrio fischeri Analysis Animal, plant and microbial ecology Anti-Bacterial Agents - classification Anti-Bacterial Agents - toxicity Antibiotics Applied ecology Atmospheric Protection/Air Quality Control/Air Pollution Biological and medical sciences Chemicals Chronic toxicity Conservation, protection and management of environment and wildlife Data acquisition Earth and Environmental Science Ecology Ecotoxicology Environment Environmental assessment Environmental Management Environmental monitoring Environmental Pollutants - classification Environmental Pollutants - toxicity Environmental risk Environmental science Fundamental and applied biological sciences. Psychology Health risk assessment Laboratories Libraries Molecular chemistry Monitoring/Environmental Analysis Organisms Pollutants Quantitative Structure-Activity Relationship Risk assessment Risk Assessment - methods Small Molecule Libraries Studies Toxicity Toxicity Tests, Chronic - methods Vibrio fischeri |
title | A docking-based receptor library of antibiotics and its novel application in predicting chronic mixture toxicity for environmental risk assessment |
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