Validation Assay of p3_VvAGL11 Marker in a Wide Range of Genetic Background for Early Selection of Stenospermocarpy in Vitis vinifera L
DNA markers technology, derived from research in molecular biology and genomics, offers great promise for plant breeding, allowing the “molecular breeding” via marker-assisted selection. Grapevine genomic resources allowed, in recent years, the characterization at molecular level of genes involved i...
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| Veröffentlicht in: | Molecular biotechnology 2013-07, Vol.54 (3), p.1021-1030 |
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| creator | Bergamini, Carlo Cardone, Maria Francesca Anaclerio, Angelo Perniola, Rocco Pichierri, Arianna Genghi, Rosalinda Alba, Vittorio Forleo, Lucia Rosaria Caputo, Angelo Raffaele Montemurro, Cinzia Blanco, Antonio Antonacci, Donato |
| description | DNA markers technology, derived from research in molecular biology and genomics, offers great promise for plant breeding, allowing the “molecular breeding” via marker-assisted selection. Grapevine genomic resources allowed, in recent years, the characterization at molecular level of genes involved in interesting phenotypes such as stenospermocarpic seedlessness, a trait really appreciated by consumers. Recent studies in table grapes revealed that the VvAGL11 gene, member of the D-lineage MADS-box family, controls the ovule identity, and thus potentially playing an important role in stenospermocarpy. Intragenic markers of VvAGL11 have been found and tested for breeding purposes. In the present paper, we describe an in deep assay on a total of 475 genotypes derived by our own grape germplasm and seeded × seedless crosses F₁ offspring, to evaluate and verify the “diagnostic” power of VvAGL11 in marker-assisted selection. We found only 8/475 that were seeded and carried the seedless-associated allele in the STS p3_VvAGL11. However, and most importantly, there were no seedless varieties without such allele. We validated the marker as a 100 % effective tool for early negative selection of stenospermocarpy in Vitis vinifera L. crosses. |
| doi_str_mv | 10.1007/s12033-013-9654-8 |
| format | Article |
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Grapevine genomic resources allowed, in recent years, the characterization at molecular level of genes involved in interesting phenotypes such as stenospermocarpic seedlessness, a trait really appreciated by consumers. Recent studies in table grapes revealed that the VvAGL11 gene, member of the D-lineage MADS-box family, controls the ovule identity, and thus potentially playing an important role in stenospermocarpy. Intragenic markers of VvAGL11 have been found and tested for breeding purposes. In the present paper, we describe an in deep assay on a total of 475 genotypes derived by our own grape germplasm and seeded × seedless crosses F₁ offspring, to evaluate and verify the “diagnostic” power of VvAGL11 in marker-assisted selection. We found only 8/475 that were seeded and carried the seedless-associated allele in the STS p3_VvAGL11. However, and most importantly, there were no seedless varieties without such allele. We validated the marker as a 100 % effective tool for early negative selection of stenospermocarpy in Vitis vinifera L. crosses.</description><identifier>ISSN: 1073-6085</identifier><identifier>EISSN: 1559-0305</identifier><identifier>DOI: 10.1007/s12033-013-9654-8</identifier><identifier>PMID: 23483354</identifier><language>eng</language><publisher>New York: Springer-Verlag</publisher><subject>alleles ; Berries ; Biochemistry ; Biological Techniques ; Biotechnology ; Breeding - methods ; Cell Biology ; Chemistry ; Chemistry and Materials Science ; crossing ; DNA, Plant - genetics ; early selection ; Fruit - genetics ; genetic background ; Genetic markers ; Genetic Markers - genetics ; genomics ; Genotype ; Genotype & phenotype ; Genotypes ; germplasm ; Human Genetics ; marker-assisted selection ; Molecular biology ; Offspring ; ovules ; Phenotype ; Phenotypes ; Plant breeding ; Plant populations ; progeny ; Protein Science ; Reproducibility of Results ; seedless varieties ; Seeds - genetics ; Selective breeding ; table grapes ; Vitaceae ; Vitis - genetics ; Vitis vinifera</subject><ispartof>Molecular biotechnology, 2013-07, Vol.54 (3), p.1021-1030</ispartof><rights>Springer Science+Business Media New York 2013</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c429t-fd7c509246c310e3f8796ac4105a7bd1d66146837d8a9724b6a0d7b3923ea4a33</citedby><cites>FETCH-LOGICAL-c429t-fd7c509246c310e3f8796ac4105a7bd1d66146837d8a9724b6a0d7b3923ea4a33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12033-013-9654-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12033-013-9654-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23483354$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bergamini, Carlo</creatorcontrib><creatorcontrib>Cardone, Maria Francesca</creatorcontrib><creatorcontrib>Anaclerio, Angelo</creatorcontrib><creatorcontrib>Perniola, Rocco</creatorcontrib><creatorcontrib>Pichierri, Arianna</creatorcontrib><creatorcontrib>Genghi, Rosalinda</creatorcontrib><creatorcontrib>Alba, Vittorio</creatorcontrib><creatorcontrib>Forleo, Lucia Rosaria</creatorcontrib><creatorcontrib>Caputo, Angelo Raffaele</creatorcontrib><creatorcontrib>Montemurro, Cinzia</creatorcontrib><creatorcontrib>Blanco, Antonio</creatorcontrib><creatorcontrib>Antonacci, Donato</creatorcontrib><title>Validation Assay of p3_VvAGL11 Marker in a Wide Range of Genetic Background for Early Selection of Stenospermocarpy in Vitis vinifera L</title><title>Molecular biotechnology</title><addtitle>Mol Biotechnol</addtitle><addtitle>Mol Biotechnol</addtitle><description>DNA markers technology, derived from research in molecular biology and genomics, offers great promise for plant breeding, allowing the “molecular breeding” via marker-assisted selection. Grapevine genomic resources allowed, in recent years, the characterization at molecular level of genes involved in interesting phenotypes such as stenospermocarpic seedlessness, a trait really appreciated by consumers. Recent studies in table grapes revealed that the VvAGL11 gene, member of the D-lineage MADS-box family, controls the ovule identity, and thus potentially playing an important role in stenospermocarpy. Intragenic markers of VvAGL11 have been found and tested for breeding purposes. In the present paper, we describe an in deep assay on a total of 475 genotypes derived by our own grape germplasm and seeded × seedless crosses F₁ offspring, to evaluate and verify the “diagnostic” power of VvAGL11 in marker-assisted selection. We found only 8/475 that were seeded and carried the seedless-associated allele in the STS p3_VvAGL11. However, and most importantly, there were no seedless varieties without such allele. We validated the marker as a 100 % effective tool for early negative selection of stenospermocarpy in Vitis vinifera L. crosses.</description><subject>alleles</subject><subject>Berries</subject><subject>Biochemistry</subject><subject>Biological Techniques</subject><subject>Biotechnology</subject><subject>Breeding - methods</subject><subject>Cell Biology</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>crossing</subject><subject>DNA, Plant - genetics</subject><subject>early selection</subject><subject>Fruit - genetics</subject><subject>genetic background</subject><subject>Genetic markers</subject><subject>Genetic Markers - genetics</subject><subject>genomics</subject><subject>Genotype</subject><subject>Genotype & phenotype</subject><subject>Genotypes</subject><subject>germplasm</subject><subject>Human Genetics</subject><subject>marker-assisted selection</subject><subject>Molecular biology</subject><subject>Offspring</subject><subject>ovules</subject><subject>Phenotype</subject><subject>Phenotypes</subject><subject>Plant breeding</subject><subject>Plant populations</subject><subject>progeny</subject><subject>Protein Science</subject><subject>Reproducibility of Results</subject><subject>seedless varieties</subject><subject>Seeds - genetics</subject><subject>Selective breeding</subject><subject>table grapes</subject><subject>Vitaceae</subject><subject>Vitis - genetics</subject><subject>Vitis vinifera</subject><issn>1073-6085</issn><issn>1559-0305</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkcuO0zAUQCMEYobCB7ABS2zYBK59_UiWZTQUpCIkypSldZs4lWfSuGMnI_UL-G0SMiDEArGyJR8f--pk2XMObziAeZu4AMQcOOalVjIvHmTnXKkyBwT1cNyDwVxDoc6yJyldAwiuJD7OzgTKAlHJ8-z7llpfU-9Dx5Yp0YmFhh3Rbu-WqzXn7BPFGxeZ7xixb7527At1ezdBK9e53lfsHVU3-xiGrmZNiOySYntiG9e66qd0JDe960I6ungIFcXjabJtfe8Tu_Odb1wktn6aPWqoTe7Z_brIrt5ffr34kK8_rz5eLNd5JUXZ501tKgWlkLpCDg6bwpSaKslBkdnVvNaaS12gqQsqjZA7TVCbHZYCHUlCXGSvZ-8xhtvBpd4efKpc21LnwpAsRyVEiWCK_0BloQAm9yJ79Rd6HYbYjYNMlNFaI-cjxWeqiiGl6Bp7jP5A8WQ52CmonYPaMaidgtrpEy_uzcPu4OrfN34VHAExA2k8GtPEP57-h_XlfKmhYGkffbJXGwF8HAfKwiDHH839sfw</recordid><startdate>20130701</startdate><enddate>20130701</enddate><creator>Bergamini, Carlo</creator><creator>Cardone, Maria Francesca</creator><creator>Anaclerio, Angelo</creator><creator>Perniola, Rocco</creator><creator>Pichierri, Arianna</creator><creator>Genghi, Rosalinda</creator><creator>Alba, Vittorio</creator><creator>Forleo, Lucia Rosaria</creator><creator>Caputo, Angelo Raffaele</creator><creator>Montemurro, Cinzia</creator><creator>Blanco, Antonio</creator><creator>Antonacci, Donato</creator><general>Springer-Verlag</general><general>Humana Press Inc</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QO</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>Q9U</scope><scope>7X8</scope><scope>RC3</scope></search><sort><creationdate>20130701</creationdate><title>Validation Assay of p3_VvAGL11 Marker in a Wide Range of Genetic Background for Early Selection of Stenospermocarpy in Vitis vinifera L</title><author>Bergamini, Carlo ; Cardone, Maria Francesca ; Anaclerio, Angelo ; Perniola, Rocco ; Pichierri, Arianna ; Genghi, Rosalinda ; Alba, Vittorio ; Forleo, Lucia Rosaria ; Caputo, Angelo Raffaele ; Montemurro, Cinzia ; Blanco, Antonio ; Antonacci, Donato</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-fd7c509246c310e3f8796ac4105a7bd1d66146837d8a9724b6a0d7b3923ea4a33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>alleles</topic><topic>Berries</topic><topic>Biochemistry</topic><topic>Biological Techniques</topic><topic>Biotechnology</topic><topic>Breeding - 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Grapevine genomic resources allowed, in recent years, the characterization at molecular level of genes involved in interesting phenotypes such as stenospermocarpic seedlessness, a trait really appreciated by consumers. Recent studies in table grapes revealed that the VvAGL11 gene, member of the D-lineage MADS-box family, controls the ovule identity, and thus potentially playing an important role in stenospermocarpy. Intragenic markers of VvAGL11 have been found and tested for breeding purposes. In the present paper, we describe an in deep assay on a total of 475 genotypes derived by our own grape germplasm and seeded × seedless crosses F₁ offspring, to evaluate and verify the “diagnostic” power of VvAGL11 in marker-assisted selection. We found only 8/475 that were seeded and carried the seedless-associated allele in the STS p3_VvAGL11. However, and most importantly, there were no seedless varieties without such allele. We validated the marker as a 100 % effective tool for early negative selection of stenospermocarpy in Vitis vinifera L. crosses.</abstract><cop>New York</cop><pub>Springer-Verlag</pub><pmid>23483354</pmid><doi>10.1007/s12033-013-9654-8</doi><tpages>10</tpages></addata></record> |
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| ispartof | Molecular biotechnology, 2013-07, Vol.54 (3), p.1021-1030 |
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| subjects | alleles Berries Biochemistry Biological Techniques Biotechnology Breeding - methods Cell Biology Chemistry Chemistry and Materials Science crossing DNA, Plant - genetics early selection Fruit - genetics genetic background Genetic markers Genetic Markers - genetics genomics Genotype Genotype & phenotype Genotypes germplasm Human Genetics marker-assisted selection Molecular biology Offspring ovules Phenotype Phenotypes Plant breeding Plant populations progeny Protein Science Reproducibility of Results seedless varieties Seeds - genetics Selective breeding table grapes Vitaceae Vitis - genetics Vitis vinifera |
| title | Validation Assay of p3_VvAGL11 Marker in a Wide Range of Genetic Background for Early Selection of Stenospermocarpy in Vitis vinifera L |
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