Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data
Seven species of Cylicocyclus Ihle, 1922 (Nematoda: Strongylidae) were collected from donkeys from Henan Province, China. Five samples of each species were selected for sequencing. Sixteen different internal transcribed spacer (ITS) sequences representing the seven species of Cylicocyclus were obtai...
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| description | Seven species of
Cylicocyclus
Ihle, 1922 (Nematoda: Strongylidae) were collected from donkeys from Henan Province, China. Five samples of each species were selected for sequencing. Sixteen different internal transcribed spacer (ITS) sequences representing the seven species of
Cylicocyclus
were obtained. Sequence differences in the first internal transcribed spacer (ITS-1) among species was lower than that of the second internal transcribed spacer (ITS-2). Phylogenetic analyses were conducted using the combined ITS-1 and ITS-2 data sets from the present study and using reference sequences from the GenBank database. The MP and ML trees were similar in topology. The phylogenetic trees were divided into two clades. Clade I included 8 species of
Cylicocyclus
; within this group,
Cylicocyclus leptostomus
(Kotlan, 1920) is nested between different samples of
Cylicocyclus ashworthi
(LeRoux, 1924), suggesting
C. ashworthi
may represent a species complex. Clade II included
Cylicocyclus elongatus
(Looss, 1900) and
Cylicocyclus ultrajectinus
(Ihle, 1920); however, these two species always clustered with the comparative species (
Petrovinema poculatum
(Looss, 1900) and
Poteriostomum imparidentatum
Quiel, 1919), suggesting that
C. elongatus
and
C. ultrajectinus
represent members of other genera. |
| doi_str_mv | 10.2478/s11686-013-0124-z |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1350890629</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1350890629</sourcerecordid><originalsourceid>FETCH-LOGICAL-c471t-cb5a48be75263713545cc1534b7af4b8ab9705086c41d9d69b0caa83f2ab14883</originalsourceid><addsrcrecordid>eNqNkV1r1jAYhoMobk5_gCcS8GQedEvSJE09EXnxC8YU1OPwJH36riNttqRFul-_zE4RQTAQ8nU9V0JuQp5zdiJkY04z59roivG6dCGrmwfkkJtWV9wo_rDMRc0qYQQ_IE9yvmRMamPMY3Igal2a4ofk-svFGuIeJ5wHT2GCsOYh09jT-QJp2V8y3a1h8NGvPpTF8TmOMMcOXtOvc4rTvhx2gK-og4wdjROdFh8QEk2DizmOEGjG6wUnj7SDGZ6SRz2EjM_uxyPy_f27b7uP1dnnD592b88qLxs-V94pkMZho4SuG14rqbznqpaugV46A65tmGJGe8m7ttOtYx7A1L0Ax6Ux9RE53rxXKZbr82zHIXsMASaMS7ZFyUzLtGgL-vIv9DIuqfzFT6rhQjCjCsU3yqeYc8LeXqVhhLRazuxdHnbLw5Y87F0e9qbUvLg3L27E7nfFrwAK8GYDfkCYMXW4T8taJn-84F9yVYLVTTGIzZCLfNr_V2l9Cxfdqvo</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1357122085</pqid></control><display><type>article</type><title>Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data</title><source>MEDLINE</source><source>SpringerLink Journals - AutoHoldings</source><creator>Bu, Yanzhen ; Niu, Hongxing ; Zhang, Luping</creator><creatorcontrib>Bu, Yanzhen ; Niu, Hongxing ; Zhang, Luping</creatorcontrib><description>Seven species of
Cylicocyclus
Ihle, 1922 (Nematoda: Strongylidae) were collected from donkeys from Henan Province, China. Five samples of each species were selected for sequencing. Sixteen different internal transcribed spacer (ITS) sequences representing the seven species of
Cylicocyclus
were obtained. Sequence differences in the first internal transcribed spacer (ITS-1) among species was lower than that of the second internal transcribed spacer (ITS-2). Phylogenetic analyses were conducted using the combined ITS-1 and ITS-2 data sets from the present study and using reference sequences from the GenBank database. The MP and ML trees were similar in topology. The phylogenetic trees were divided into two clades. Clade I included 8 species of
Cylicocyclus
; within this group,
Cylicocyclus leptostomus
(Kotlan, 1920) is nested between different samples of
Cylicocyclus ashworthi
(LeRoux, 1924), suggesting
C. ashworthi
may represent a species complex. Clade II included
Cylicocyclus elongatus
(Looss, 1900) and
Cylicocyclus ultrajectinus
(Ihle, 1920); however, these two species always clustered with the comparative species (
Petrovinema poculatum
(Looss, 1900) and
Poteriostomum imparidentatum
Quiel, 1919), suggesting that
C. elongatus
and
C. ultrajectinus
represent members of other genera.</description><identifier>ISSN: 1230-2821</identifier><identifier>EISSN: 1896-1851</identifier><identifier>DOI: 10.2478/s11686-013-0124-z</identifier><identifier>PMID: 23666651</identifier><language>eng</language><publisher>Heidelberg: SP Versita</publisher><subject>Animal Systematics/Taxonomy/Biogeography ; Animals ; Biomedical and Life Sciences ; Biomedicine ; China ; Cylicocyclus ; DNA, Ribosomal Spacer - analysis ; DNA, Ribosomal Spacer - genetics ; Ecology ; Equidae - parasitology ; ITS ; Life sciences ; Male ; Medical Microbiology ; Microbiology ; Morphology ; Nematoda ; Nematoda - classification ; Nematoda - genetics ; Nematoda - isolation & purification ; Nematode Infections - parasitology ; Nematode Infections - veterinary ; Nematodes ; Parasitology ; Phylogenetics ; Phylogeny ; Ribosomal DNA ; Sequence Analysis, DNA - methods ; Species Specificity ; Strongylidae</subject><ispartof>Acta parasitologica, 2013-06, Vol.58 (2), p.167-173</ispartof><rights>Versita Warsaw and Springer-Verlag Wien 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c471t-cb5a48be75263713545cc1534b7af4b8ab9705086c41d9d69b0caa83f2ab14883</citedby><cites>FETCH-LOGICAL-c471t-cb5a48be75263713545cc1534b7af4b8ab9705086c41d9d69b0caa83f2ab14883</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.2478/s11686-013-0124-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.2478/s11686-013-0124-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23666651$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bu, Yanzhen</creatorcontrib><creatorcontrib>Niu, Hongxing</creatorcontrib><creatorcontrib>Zhang, Luping</creatorcontrib><title>Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data</title><title>Acta parasitologica</title><addtitle>Acta Parasit</addtitle><addtitle>Acta Parasitol</addtitle><description>Seven species of
Cylicocyclus
Ihle, 1922 (Nematoda: Strongylidae) were collected from donkeys from Henan Province, China. Five samples of each species were selected for sequencing. Sixteen different internal transcribed spacer (ITS) sequences representing the seven species of
Cylicocyclus
were obtained. Sequence differences in the first internal transcribed spacer (ITS-1) among species was lower than that of the second internal transcribed spacer (ITS-2). Phylogenetic analyses were conducted using the combined ITS-1 and ITS-2 data sets from the present study and using reference sequences from the GenBank database. The MP and ML trees were similar in topology. The phylogenetic trees were divided into two clades. Clade I included 8 species of
Cylicocyclus
; within this group,
Cylicocyclus leptostomus
(Kotlan, 1920) is nested between different samples of
Cylicocyclus ashworthi
(LeRoux, 1924), suggesting
C. ashworthi
may represent a species complex. Clade II included
Cylicocyclus elongatus
(Looss, 1900) and
Cylicocyclus ultrajectinus
(Ihle, 1920); however, these two species always clustered with the comparative species (
Petrovinema poculatum
(Looss, 1900) and
Poteriostomum imparidentatum
Quiel, 1919), suggesting that
C. elongatus
and
C. ultrajectinus
represent members of other genera.</description><subject>Animal Systematics/Taxonomy/Biogeography</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>China</subject><subject>Cylicocyclus</subject><subject>DNA, Ribosomal Spacer - analysis</subject><subject>DNA, Ribosomal Spacer - genetics</subject><subject>Ecology</subject><subject>Equidae - parasitology</subject><subject>ITS</subject><subject>Life sciences</subject><subject>Male</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Morphology</subject><subject>Nematoda</subject><subject>Nematoda - classification</subject><subject>Nematoda - genetics</subject><subject>Nematoda - isolation & purification</subject><subject>Nematode Infections - parasitology</subject><subject>Nematode Infections - veterinary</subject><subject>Nematodes</subject><subject>Parasitology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Ribosomal DNA</subject><subject>Sequence Analysis, DNA - methods</subject><subject>Species Specificity</subject><subject>Strongylidae</subject><issn>1230-2821</issn><issn>1896-1851</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkV1r1jAYhoMobk5_gCcS8GQedEvSJE09EXnxC8YU1OPwJH36riNttqRFul-_zE4RQTAQ8nU9V0JuQp5zdiJkY04z59roivG6dCGrmwfkkJtWV9wo_rDMRc0qYQQ_IE9yvmRMamPMY3Igal2a4ofk-svFGuIeJ5wHT2GCsOYh09jT-QJp2V8y3a1h8NGvPpTF8TmOMMcOXtOvc4rTvhx2gK-og4wdjROdFh8QEk2DizmOEGjG6wUnj7SDGZ6SRz2EjM_uxyPy_f27b7uP1dnnD592b88qLxs-V94pkMZho4SuG14rqbznqpaugV46A65tmGJGe8m7ttOtYx7A1L0Ax6Ux9RE53rxXKZbr82zHIXsMASaMS7ZFyUzLtGgL-vIv9DIuqfzFT6rhQjCjCsU3yqeYc8LeXqVhhLRazuxdHnbLw5Y87F0e9qbUvLg3L27E7nfFrwAK8GYDfkCYMXW4T8taJn-84F9yVYLVTTGIzZCLfNr_V2l9Cxfdqvo</recordid><startdate>20130601</startdate><enddate>20130601</enddate><creator>Bu, Yanzhen</creator><creator>Niu, Hongxing</creator><creator>Zhang, Luping</creator><general>SP Versita</general><general>Versita</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7U7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20130601</creationdate><title>Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data</title><author>Bu, Yanzhen ; Niu, Hongxing ; Zhang, Luping</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c471t-cb5a48be75263713545cc1534b7af4b8ab9705086c41d9d69b0caa83f2ab14883</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Animal Systematics/Taxonomy/Biogeography</topic><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>China</topic><topic>Cylicocyclus</topic><topic>DNA, Ribosomal Spacer - analysis</topic><topic>DNA, Ribosomal Spacer - genetics</topic><topic>Ecology</topic><topic>Equidae - parasitology</topic><topic>ITS</topic><topic>Life sciences</topic><topic>Male</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Morphology</topic><topic>Nematoda</topic><topic>Nematoda - classification</topic><topic>Nematoda - genetics</topic><topic>Nematoda - isolation & purification</topic><topic>Nematode Infections - parasitology</topic><topic>Nematode Infections - veterinary</topic><topic>Nematodes</topic><topic>Parasitology</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Ribosomal DNA</topic><topic>Sequence Analysis, DNA - methods</topic><topic>Species Specificity</topic><topic>Strongylidae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bu, Yanzhen</creatorcontrib><creatorcontrib>Niu, Hongxing</creatorcontrib><creatorcontrib>Zhang, Luping</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Acta parasitologica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bu, Yanzhen</au><au>Niu, Hongxing</au><au>Zhang, Luping</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data</atitle><jtitle>Acta parasitologica</jtitle><stitle>Acta Parasit</stitle><addtitle>Acta Parasitol</addtitle><date>2013-06-01</date><risdate>2013</risdate><volume>58</volume><issue>2</issue><spage>167</spage><epage>173</epage><pages>167-173</pages><issn>1230-2821</issn><eissn>1896-1851</eissn><abstract>Seven species of
Cylicocyclus
Ihle, 1922 (Nematoda: Strongylidae) were collected from donkeys from Henan Province, China. Five samples of each species were selected for sequencing. Sixteen different internal transcribed spacer (ITS) sequences representing the seven species of
Cylicocyclus
were obtained. Sequence differences in the first internal transcribed spacer (ITS-1) among species was lower than that of the second internal transcribed spacer (ITS-2). Phylogenetic analyses were conducted using the combined ITS-1 and ITS-2 data sets from the present study and using reference sequences from the GenBank database. The MP and ML trees were similar in topology. The phylogenetic trees were divided into two clades. Clade I included 8 species of
Cylicocyclus
; within this group,
Cylicocyclus leptostomus
(Kotlan, 1920) is nested between different samples of
Cylicocyclus ashworthi
(LeRoux, 1924), suggesting
C. ashworthi
may represent a species complex. Clade II included
Cylicocyclus elongatus
(Looss, 1900) and
Cylicocyclus ultrajectinus
(Ihle, 1920); however, these two species always clustered with the comparative species (
Petrovinema poculatum
(Looss, 1900) and
Poteriostomum imparidentatum
Quiel, 1919), suggesting that
C. elongatus
and
C. ultrajectinus
represent members of other genera.</abstract><cop>Heidelberg</cop><pub>SP Versita</pub><pmid>23666651</pmid><doi>10.2478/s11686-013-0124-z</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1230-2821 |
| ispartof | Acta parasitologica, 2013-06, Vol.58 (2), p.167-173 |
| issn | 1230-2821 1896-1851 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1350890629 |
| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Animal Systematics/Taxonomy/Biogeography Animals Biomedical and Life Sciences Biomedicine China Cylicocyclus DNA, Ribosomal Spacer - analysis DNA, Ribosomal Spacer - genetics Ecology Equidae - parasitology ITS Life sciences Male Medical Microbiology Microbiology Morphology Nematoda Nematoda - classification Nematoda - genetics Nematoda - isolation & purification Nematode Infections - parasitology Nematode Infections - veterinary Nematodes Parasitology Phylogenetics Phylogeny Ribosomal DNA Sequence Analysis, DNA - methods Species Specificity Strongylidae |
| title | Phylogenetic analysis of the genus Cylicocyclus (Nematoda: Strongylidae) based on nuclear ribosomal sequence data |
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