Genomic characterization of echovirus 6 causing aseptic meningitis in Hokkaido, Japan: a novel cluster in the nonstructural protein coding region of human enterovirus B
We determined four complete nucleotide sequences of echovirus 6 (E6) isolated from an epidemic of aseptic meningitis (AM) in Hokkaido, Japan, in 2011. Phylogenetic analysis of the genes encoding viral capsid protein 1 revealed that the strains were closely related to E6 strains isolated in China in...
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| Veröffentlicht in: | Archives of virology 2013-04, Vol.158 (4), p.775-784 |
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| creator | Miyoshi, Masahiro Komagome, Rika Ishida, Setsuko Nagano, Hideki Takahashi, Kenichi Okano, Motohiko |
| description | We determined four complete nucleotide sequences of echovirus 6 (E6) isolated from an epidemic of aseptic meningitis (AM) in Hokkaido, Japan, in 2011. Phylogenetic analysis of the genes encoding viral capsid protein 1 revealed that the strains were closely related to E6 strains isolated in China in recent years, but they were distantly related to E6 strains isolated from patients with AM in Osaka Prefecture, Japan, in 2011. The genes encoding the viral protease and RNA-dependent RNA polymerase (3CD) were closely related to those of several non-E6 strains of the species
Human enterovirus B
isolated in China, South Korea, and Australia from 1999 to 2010, resulting in a novel cluster in the phylogenetic tree. These results suggest that the incidence of AM in Japan in 2011 was caused by at least two lineages of E6 strains, and a lineage of the 3CD gene was interspersed among different serotypic strains isolated in Western Pacific countries. |
| doi_str_mv | 10.1007/s00705-012-1535-0 |
| format | Article |
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Human enterovirus B
isolated in China, South Korea, and Australia from 1999 to 2010, resulting in a novel cluster in the phylogenetic tree. These results suggest that the incidence of AM in Japan in 2011 was caused by at least two lineages of E6 strains, and a lineage of the 3CD gene was interspersed among different serotypic strains isolated in Western Pacific countries.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-012-1535-0</identifier><identifier>PMID: 23178967</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Amino Acid Sequence ; Base Sequence ; Biomedical and Life Sciences ; Biomedicine ; Child, Preschool ; Conserved Sequence ; Echovirus ; Echovirus 6, Human - classification ; Echovirus 6, Human - genetics ; Echovirus 6, Human - isolation & purification ; Echovirus Infections - epidemiology ; Echovirus Infections - virology ; Enterovirus ; Genes ; Genome, Viral ; Genomes ; Humans ; Infectious Diseases ; Japan - epidemiology ; Medical Microbiology ; Meningitis ; Meningitis, Aseptic - epidemiology ; Meningitis, Aseptic - virology ; Meningitis, Viral - epidemiology ; Meningitis, Viral - virology ; Molecular Sequence Data ; Original Article ; Phylogenetics ; Phylogeny ; Proteins ; RNA polymerase ; RNA, Viral - chemistry ; RNA, Viral - isolation & purification ; Viral Nonstructural Proteins - genetics ; Virology</subject><ispartof>Archives of virology, 2013-04, Vol.158 (4), p.775-784</ispartof><rights>Springer-Verlag Wien 2012</rights><rights>Springer-Verlag Wien 2013</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c471t-6519ce674fc0a3ceaafc752dc9bc50f9c3cd9532bdb41470f34c762abebde7d03</citedby><cites>FETCH-LOGICAL-c471t-6519ce674fc0a3ceaafc752dc9bc50f9c3cd9532bdb41470f34c762abebde7d03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-012-1535-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-012-1535-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23178967$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Miyoshi, Masahiro</creatorcontrib><creatorcontrib>Komagome, Rika</creatorcontrib><creatorcontrib>Ishida, Setsuko</creatorcontrib><creatorcontrib>Nagano, Hideki</creatorcontrib><creatorcontrib>Takahashi, Kenichi</creatorcontrib><creatorcontrib>Okano, Motohiko</creatorcontrib><title>Genomic characterization of echovirus 6 causing aseptic meningitis in Hokkaido, Japan: a novel cluster in the nonstructural protein coding region of human enterovirus B</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>We determined four complete nucleotide sequences of echovirus 6 (E6) isolated from an epidemic of aseptic meningitis (AM) in Hokkaido, Japan, in 2011. Phylogenetic analysis of the genes encoding viral capsid protein 1 revealed that the strains were closely related to E6 strains isolated in China in recent years, but they were distantly related to E6 strains isolated from patients with AM in Osaka Prefecture, Japan, in 2011. The genes encoding the viral protease and RNA-dependent RNA polymerase (3CD) were closely related to those of several non-E6 strains of the species
Human enterovirus B
isolated in China, South Korea, and Australia from 1999 to 2010, resulting in a novel cluster in the phylogenetic tree. These results suggest that the incidence of AM in Japan in 2011 was caused by at least two lineages of E6 strains, and a lineage of the 3CD gene was interspersed among different serotypic strains isolated in Western Pacific countries.</description><subject>Amino Acid Sequence</subject><subject>Base Sequence</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Child, Preschool</subject><subject>Conserved Sequence</subject><subject>Echovirus</subject><subject>Echovirus 6, Human - classification</subject><subject>Echovirus 6, Human - genetics</subject><subject>Echovirus 6, Human - isolation & purification</subject><subject>Echovirus Infections - epidemiology</subject><subject>Echovirus Infections - virology</subject><subject>Enterovirus</subject><subject>Genes</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Humans</subject><subject>Infectious Diseases</subject><subject>Japan - epidemiology</subject><subject>Medical Microbiology</subject><subject>Meningitis</subject><subject>Meningitis, Aseptic - epidemiology</subject><subject>Meningitis, Aseptic - virology</subject><subject>Meningitis, Viral - epidemiology</subject><subject>Meningitis, Viral - virology</subject><subject>Molecular Sequence Data</subject><subject>Original Article</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>RNA polymerase</subject><subject>RNA, Viral - chemistry</subject><subject>RNA, Viral - isolation & purification</subject><subject>Viral Nonstructural Proteins - genetics</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkc9u1DAQxi0EotvCA3BBlrhwaMCOndjhBhW0oEpc4Bw5k8mu28Re_KcSPBGPicMuCCEhcbE9M7_5ZqyPkCecveCMqZexHKypGK8r3ojyuEc2XIq60qrT98mGCSYr3TJ9Qk5jvGGsJETzkJzUgivdtWpDvl-i84sFCjsTDCQM9ptJ1jvqJ4qw83c25EhbCiZH67bURNynwi_oSmiTjdQ6euVvb40d_Tn9YPbGvaKGOn-HM4U5xyK6MmmHJeliChlSDmam--ATlgr4cZUOuD0O3uXFOIqudB4XePOIPJjMHPHx8T4jn9-9_XRxVV1_vHx_8fq6Aql4qtqGd4CtkhMwIwCNmUA19QjdAA2bOhAwdo2oh3GQXCo2CQmqrc2Aw4hqZOKMPD_oluW-ZIypX2wEnGfj0OfYcyG11E0j_getpdAd71RBn_2F3vgcXPnIT4pJXQtdKH6gIPgYA079PtjFhK89Z_3qeH9wvC-O96vj_brE06NyHhYcf3f8srgA9QGIpeS2GP4Y_U_VHya7uZE</recordid><startdate>20130401</startdate><enddate>20130401</enddate><creator>Miyoshi, Masahiro</creator><creator>Komagome, Rika</creator><creator>Ishida, Setsuko</creator><creator>Nagano, Hideki</creator><creator>Takahashi, Kenichi</creator><creator>Okano, Motohiko</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20130401</creationdate><title>Genomic characterization of echovirus 6 causing aseptic meningitis in Hokkaido, Japan: a novel cluster in the nonstructural protein coding region of human enterovirus B</title><author>Miyoshi, Masahiro ; Komagome, Rika ; Ishida, Setsuko ; Nagano, Hideki ; Takahashi, Kenichi ; Okano, Motohiko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c471t-6519ce674fc0a3ceaafc752dc9bc50f9c3cd9532bdb41470f34c762abebde7d03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Amino Acid Sequence</topic><topic>Base Sequence</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Child, Preschool</topic><topic>Conserved Sequence</topic><topic>Echovirus</topic><topic>Echovirus 6, Human - classification</topic><topic>Echovirus 6, Human - genetics</topic><topic>Echovirus 6, Human - isolation & purification</topic><topic>Echovirus Infections - epidemiology</topic><topic>Echovirus Infections - virology</topic><topic>Enterovirus</topic><topic>Genes</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Humans</topic><topic>Infectious Diseases</topic><topic>Japan - epidemiology</topic><topic>Medical Microbiology</topic><topic>Meningitis</topic><topic>Meningitis, Aseptic - epidemiology</topic><topic>Meningitis, Aseptic - virology</topic><topic>Meningitis, Viral - epidemiology</topic><topic>Meningitis, Viral - virology</topic><topic>Molecular Sequence Data</topic><topic>Original Article</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>RNA polymerase</topic><topic>RNA, Viral - chemistry</topic><topic>RNA, Viral - isolation & purification</topic><topic>Viral Nonstructural Proteins - genetics</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Miyoshi, Masahiro</creatorcontrib><creatorcontrib>Komagome, Rika</creatorcontrib><creatorcontrib>Ishida, Setsuko</creatorcontrib><creatorcontrib>Nagano, Hideki</creatorcontrib><creatorcontrib>Takahashi, Kenichi</creatorcontrib><creatorcontrib>Okano, Motohiko</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Miyoshi, Masahiro</au><au>Komagome, Rika</au><au>Ishida, Setsuko</au><au>Nagano, Hideki</au><au>Takahashi, Kenichi</au><au>Okano, Motohiko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic characterization of echovirus 6 causing aseptic meningitis in Hokkaido, Japan: a novel cluster in the nonstructural protein coding region of human enterovirus B</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2013-04-01</date><risdate>2013</risdate><volume>158</volume><issue>4</issue><spage>775</spage><epage>784</epage><pages>775-784</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>We determined four complete nucleotide sequences of echovirus 6 (E6) isolated from an epidemic of aseptic meningitis (AM) in Hokkaido, Japan, in 2011. Phylogenetic analysis of the genes encoding viral capsid protein 1 revealed that the strains were closely related to E6 strains isolated in China in recent years, but they were distantly related to E6 strains isolated from patients with AM in Osaka Prefecture, Japan, in 2011. The genes encoding the viral protease and RNA-dependent RNA polymerase (3CD) were closely related to those of several non-E6 strains of the species
Human enterovirus B
isolated in China, South Korea, and Australia from 1999 to 2010, resulting in a novel cluster in the phylogenetic tree. These results suggest that the incidence of AM in Japan in 2011 was caused by at least two lineages of E6 strains, and a lineage of the 3CD gene was interspersed among different serotypic strains isolated in Western Pacific countries.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>23178967</pmid><doi>10.1007/s00705-012-1535-0</doi><tpages>10</tpages></addata></record> |
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| subjects | Amino Acid Sequence Base Sequence Biomedical and Life Sciences Biomedicine Child, Preschool Conserved Sequence Echovirus Echovirus 6, Human - classification Echovirus 6, Human - genetics Echovirus 6, Human - isolation & purification Echovirus Infections - epidemiology Echovirus Infections - virology Enterovirus Genes Genome, Viral Genomes Humans Infectious Diseases Japan - epidemiology Medical Microbiology Meningitis Meningitis, Aseptic - epidemiology Meningitis, Aseptic - virology Meningitis, Viral - epidemiology Meningitis, Viral - virology Molecular Sequence Data Original Article Phylogenetics Phylogeny Proteins RNA polymerase RNA, Viral - chemistry RNA, Viral - isolation & purification Viral Nonstructural Proteins - genetics Virology |
| title | Genomic characterization of echovirus 6 causing aseptic meningitis in Hokkaido, Japan: a novel cluster in the nonstructural protein coding region of human enterovirus B |
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