FTIR spectra of algal species can be used as physiological fingerprints to assess their actual growth potential
Fourier transform infrared (FTIR) spectra were measured from cells of Microcystis aeruginosa and Protoceratium reticulatum, whose growth rates were manipulated by the availability of nutrients or light. As expected, the macromolecular composition changed in response to the treatments. These changes...
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description | Fourier transform infrared (FTIR) spectra were measured from cells of Microcystis aeruginosa and Protoceratium reticulatum, whose growth rates were manipulated by the availability of nutrients or light. As expected, the macromolecular composition changed in response to the treatments. These changes were species‐specific and depended on the type of perturbation applied to the growth regime. Microcystis aeruginosa showed an increase in the carbohydrate‐to‐protein ratio with decreased growth rates, under nutrient limitation, whereas light limitation induced a decrease of the carbohydrate‐to‐protein ratio with decreasing proliferation rates. The macromolecular pools of P. reticulatum showed a higher degree of compositional homeostasis. Only when the lowest light irradiance and nutrient availability were supplied, an increase of the carbohydrate‐to‐protein FTIR absorbance ratio was observed. A species‐specific partial least squares (PLS) model was developed using the whole FTIR spectra. This model afforded a very high correlation between the predicted and the measured growth rates, regardless of the growth conditions. On the contrary, the prediction based on absorption band ratios generally used in FTIR studies would strongly depend on growth conditions. This new computational method could constitute a substantial improvement in the early warning systems of algal blooms and, in general, for the study of algal growth, e.g. in biotechnology. Furthermore, these results confirm the suitability of FTIR spectroscopy as a tool to map complex biological processes like growth under different environmental conditions. |
doi_str_mv | 10.1111/j.1399-3054.2012.01636.x |
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As expected, the macromolecular composition changed in response to the treatments. These changes were species‐specific and depended on the type of perturbation applied to the growth regime. Microcystis aeruginosa showed an increase in the carbohydrate‐to‐protein ratio with decreased growth rates, under nutrient limitation, whereas light limitation induced a decrease of the carbohydrate‐to‐protein ratio with decreasing proliferation rates. The macromolecular pools of P. reticulatum showed a higher degree of compositional homeostasis. Only when the lowest light irradiance and nutrient availability were supplied, an increase of the carbohydrate‐to‐protein FTIR absorbance ratio was observed. A species‐specific partial least squares (PLS) model was developed using the whole FTIR spectra. This model afforded a very high correlation between the predicted and the measured growth rates, regardless of the growth conditions. On the contrary, the prediction based on absorption band ratios generally used in FTIR studies would strongly depend on growth conditions. This new computational method could constitute a substantial improvement in the early warning systems of algal blooms and, in general, for the study of algal growth, e.g. in biotechnology. 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As expected, the macromolecular composition changed in response to the treatments. These changes were species‐specific and depended on the type of perturbation applied to the growth regime. Microcystis aeruginosa showed an increase in the carbohydrate‐to‐protein ratio with decreased growth rates, under nutrient limitation, whereas light limitation induced a decrease of the carbohydrate‐to‐protein ratio with decreasing proliferation rates. The macromolecular pools of P. reticulatum showed a higher degree of compositional homeostasis. Only when the lowest light irradiance and nutrient availability were supplied, an increase of the carbohydrate‐to‐protein FTIR absorbance ratio was observed. A species‐specific partial least squares (PLS) model was developed using the whole FTIR spectra. This model afforded a very high correlation between the predicted and the measured growth rates, regardless of the growth conditions. On the contrary, the prediction based on absorption band ratios generally used in FTIR studies would strongly depend on growth conditions. This new computational method could constitute a substantial improvement in the early warning systems of algal blooms and, in general, for the study of algal growth, e.g. in biotechnology. Furthermore, these results confirm the suitability of FTIR spectroscopy as a tool to map complex biological processes like growth under different environmental conditions.</description><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - physiology</subject><subject>Biological and medical sciences</subject><subject>Biomarkers - chemistry</subject><subject>Carbohydrates</subject><subject>Carbohydrates - chemistry</subject><subject>Carbohydrates - physiology</subject><subject>Computational Biology - methods</subject><subject>Dinoflagellida - chemistry</subject><subject>Dinoflagellida - growth & development</subject><subject>Dinoflagellida - physiology</subject><subject>Dinoflagellida - radiation effects</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Least-Squares Analysis</subject><subject>Light</subject><subject>Microcystis - chemistry</subject><subject>Microcystis - growth & development</subject><subject>Microcystis - physiology</subject><subject>Microcystis - radiation effects</subject><subject>Microcystis aeruginosa</subject><subject>Nitrogen - chemistry</subject><subject>Phosphorus - chemistry</subject><subject>Plant physiology and development</subject><subject>Proteins</subject><subject>Protoceratium reticulatum</subject><subject>Protozoan Proteins - chemistry</subject><subject>Protozoan Proteins - physiology</subject><subject>Species Specificity</subject><subject>Spectroscopy, Fourier Transform Infrared - methods</subject><subject>Spectrum analysis</subject><subject>Studies</subject><issn>0031-9317</issn><issn>1399-3054</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkV1v0zAUhi3ExErhLyBLCImbZP6InfiCC1TRbVK1DTQEd5aTOq1LGgc70dp_z8lairSbYVk6R_bz-hyfFyFMSUphXWxSypVKOBFZyghlKaGSy3T3Ak1OFy_RhBBOE8Vpfo5ex7ghQEnKXqFzxkRGGFET5Of3199w7GzVB4N9jU2zMs3jgbMRV6bFpcVDtEtsIu7W--h841euAqh27cqGLri2j7j3AEQbIVtbF7Cp-gGYVfAP_Rp3vrdt70zzBp3Vpon27TFO0ff5l_vZVbK4vbyefV4kleBUJkaojMlSLlktpK25YcZySURRQ8yynJTFMmeEMyIYqcq8VIzznFBa5GUhmeBT9PHwbhf878HGXm9drGzTmNb6IWrKsyIraKbU8ygVFCpJmQP6_gm68UNo4SNAZUQJzqCpKSoOVBV8jMHWGma0NWGvKdGjf3qjR5v0aJMe_dOP_ukdSN8dCwzl1i5Pwr-GAfDhCJgIHtTBtJWL_zgwGHYB3KcD9-Aau__vBvTd3WLMQJ8c9C72dnfSm_BLwxxyoX_cXGpxpWZk_nOuv_I_1MXDCA</recordid><startdate>201212</startdate><enddate>201212</enddate><creator>Jebsen, Christian</creator><creator>Norici, Alessandra</creator><creator>Wagner, Heiko</creator><creator>Palmucci, Matteo</creator><creator>Giordano, Mario</creator><creator>Wilhelm, Christian</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7ST</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope></search><sort><creationdate>201212</creationdate><title>FTIR spectra of algal species can be used as physiological fingerprints to assess their actual growth potential</title><author>Jebsen, Christian ; Norici, Alessandra ; Wagner, Heiko ; Palmucci, Matteo ; Giordano, Mario ; Wilhelm, Christian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5316-a59426b6d2f56ef3a2ae36058fae34470b8d720320520cb7b9233701187b86253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - physiology</topic><topic>Biological and medical sciences</topic><topic>Biomarkers - chemistry</topic><topic>Carbohydrates</topic><topic>Carbohydrates - chemistry</topic><topic>Carbohydrates - physiology</topic><topic>Computational Biology - methods</topic><topic>Dinoflagellida - chemistry</topic><topic>Dinoflagellida - growth & development</topic><topic>Dinoflagellida - physiology</topic><topic>Dinoflagellida - radiation effects</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Least-Squares Analysis</topic><topic>Light</topic><topic>Microcystis - chemistry</topic><topic>Microcystis - growth & development</topic><topic>Microcystis - physiology</topic><topic>Microcystis - radiation effects</topic><topic>Microcystis aeruginosa</topic><topic>Nitrogen - chemistry</topic><topic>Phosphorus - chemistry</topic><topic>Plant physiology and development</topic><topic>Proteins</topic><topic>Protoceratium reticulatum</topic><topic>Protozoan Proteins - chemistry</topic><topic>Protozoan Proteins - physiology</topic><topic>Species Specificity</topic><topic>Spectroscopy, Fourier Transform Infrared - methods</topic><topic>Spectrum analysis</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jebsen, Christian</creatorcontrib><creatorcontrib>Norici, Alessandra</creatorcontrib><creatorcontrib>Wagner, Heiko</creatorcontrib><creatorcontrib>Palmucci, Matteo</creatorcontrib><creatorcontrib>Giordano, Mario</creatorcontrib><creatorcontrib>Wilhelm, Christian</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>Physiologia plantarum</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jebsen, Christian</au><au>Norici, Alessandra</au><au>Wagner, Heiko</au><au>Palmucci, Matteo</au><au>Giordano, Mario</au><au>Wilhelm, Christian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>FTIR spectra of algal species can be used as physiological fingerprints to assess their actual growth potential</atitle><jtitle>Physiologia plantarum</jtitle><addtitle>Physiol Plant</addtitle><date>2012-12</date><risdate>2012</risdate><volume>146</volume><issue>4</issue><spage>427</spage><epage>438</epage><pages>427-438</pages><issn>0031-9317</issn><eissn>1399-3054</eissn><coden>PHPLAI</coden><abstract>Fourier transform infrared (FTIR) spectra were measured from cells of Microcystis aeruginosa and Protoceratium reticulatum, whose growth rates were manipulated by the availability of nutrients or light. As expected, the macromolecular composition changed in response to the treatments. These changes were species‐specific and depended on the type of perturbation applied to the growth regime. Microcystis aeruginosa showed an increase in the carbohydrate‐to‐protein ratio with decreased growth rates, under nutrient limitation, whereas light limitation induced a decrease of the carbohydrate‐to‐protein ratio with decreasing proliferation rates. The macromolecular pools of P. reticulatum showed a higher degree of compositional homeostasis. Only when the lowest light irradiance and nutrient availability were supplied, an increase of the carbohydrate‐to‐protein FTIR absorbance ratio was observed. A species‐specific partial least squares (PLS) model was developed using the whole FTIR spectra. This model afforded a very high correlation between the predicted and the measured growth rates, regardless of the growth conditions. On the contrary, the prediction based on absorption band ratios generally used in FTIR studies would strongly depend on growth conditions. This new computational method could constitute a substantial improvement in the early warning systems of algal blooms and, in general, for the study of algal growth, e.g. in biotechnology. Furthermore, these results confirm the suitability of FTIR spectroscopy as a tool to map complex biological processes like growth under different environmental conditions.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>22540209</pmid><doi>10.1111/j.1399-3054.2012.01636.x</doi><tpages>12</tpages></addata></record> |
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subjects | Bacterial Proteins - chemistry Bacterial Proteins - physiology Biological and medical sciences Biomarkers - chemistry Carbohydrates Carbohydrates - chemistry Carbohydrates - physiology Computational Biology - methods Dinoflagellida - chemistry Dinoflagellida - growth & development Dinoflagellida - physiology Dinoflagellida - radiation effects Fundamental and applied biological sciences. Psychology Least-Squares Analysis Light Microcystis - chemistry Microcystis - growth & development Microcystis - physiology Microcystis - radiation effects Microcystis aeruginosa Nitrogen - chemistry Phosphorus - chemistry Plant physiology and development Proteins Protoceratium reticulatum Protozoan Proteins - chemistry Protozoan Proteins - physiology Species Specificity Spectroscopy, Fourier Transform Infrared - methods Spectrum analysis Studies |
title | FTIR spectra of algal species can be used as physiological fingerprints to assess their actual growth potential |
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