DNA barcoding of the genus Lepidion (Gadiformes: Moridae) with recognition of Lepidion eques as a junior synonym of Lepidion lepidion
DNA sequences of cytochrome c oxidase I gene (COI) from Lepidion spp. were employed to test the efficiency of species identification. A sample of 32 individuals from five Lepidion species was sequenced and combined with 26 sequences from other BOLD projects. As a result, 58 Lepidion DNA sequences of...
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| Veröffentlicht in: | Molecular ecology resources 2013-03, Vol.13 (2), p.189-199 |
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| creator | Bañón, R. Arronte, J. C. Vázquez-Dorado, S. Del Río, J. L. de Carlos, A. |
| description | DNA sequences of cytochrome c oxidase I gene (COI) from Lepidion spp. were employed to test the efficiency of species identification. A sample of 32 individuals from five Lepidion species was sequenced and combined with 26 sequences from other BOLD projects. As a result, 58 Lepidion DNA sequences of the COI gene belonging to eight of the nine recognized Lepidion species were analysed. Sequences were aligned and formed seven clades in a Bayesian phylogenetic tree, where Lepidion lepidion and Lepidion eques grouped jointly. The Kimura 2‐parameter genetic distances, among congeners were, on average, 4.28%, 16 times greater than among conspecifics (0.27%). The main diagnostic meristic data of Lepidion spp. were compiled and a detailed morphological revision of the congeneric species L. eques and L. lepidion was made. The eye diameter was significantly different between L. eques and L. lepidion (P |
| doi_str_mv | 10.1111/1755-0998.12045 |
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C. ; Vázquez-Dorado, S. ; Del Río, J. L. ; de Carlos, A.</creator><creatorcontrib>Bañón, R. ; Arronte, J. C. ; Vázquez-Dorado, S. ; Del Río, J. L. ; de Carlos, A.</creatorcontrib><description>DNA sequences of cytochrome c oxidase I gene (COI) from Lepidion spp. were employed to test the efficiency of species identification. A sample of 32 individuals from five Lepidion species was sequenced and combined with 26 sequences from other BOLD projects. As a result, 58 Lepidion DNA sequences of the COI gene belonging to eight of the nine recognized Lepidion species were analysed. Sequences were aligned and formed seven clades in a Bayesian phylogenetic tree, where Lepidion lepidion and Lepidion eques grouped jointly. The Kimura 2‐parameter genetic distances, among congeners were, on average, 4.28%, 16 times greater than among conspecifics (0.27%). The main diagnostic meristic data of Lepidion spp. were compiled and a detailed morphological revision of the congeneric species L. eques and L. lepidion was made. The eye diameter was significantly different between L. eques and L. lepidion (P < 0.001). The number of anal fin rays ranged from 45 to 51 in L. lepidion and from 47 to 54 in L. eques, but no significant differences were obtained in the mean values of this variable (P = 0.07). According to the morphological and genetic analyses, the results strongly suggest that the Mediterranean codling L. lepidion and the North Atlantic codling L. eques are conspecific, making L. eques a junior synonym of L. lepidion.</description><identifier>ISSN: 1755-098X</identifier><identifier>EISSN: 1755-0998</identifier><identifier>DOI: 10.1111/1755-0998.12045</identifier><identifier>PMID: 23241208</identifier><language>eng</language><publisher>Oxford: Blackwell Publishing Ltd</publisher><subject>Animal and plant ecology ; Animal, plant and microbial ecology ; Animals ; Biological and medical sciences ; cytochrome c oxidase subunit-I ; DNA barcoding ; DNA Barcoding, Taxonomic ; Fundamental and applied biological sciences. Psychology ; Gadiformes ; Gadiformes - classification ; Gadiformes - genetics ; General aspects ; Genetics of eukaryotes. Biological and molecular evolution ; Lepidion ; Lepidion eques ; Lepidion lepidion ; Lepidion species ; Moridae ; Phylogeny ; Population genetics, reproduction patterns ; Sequence Analysis, DNA ; Synecology</subject><ispartof>Molecular ecology resources, 2013-03, Vol.13 (2), p.189-199</ispartof><rights>2012 Blackwell Publishing Ltd</rights><rights>2014 INIST-CNRS</rights><rights>2012 Blackwell Publishing Ltd.</rights><rights>2013 Blackwell Publishing Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2F1755-0998.12045$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2F1755-0998.12045$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=27097269$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23241208$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bañón, R.</creatorcontrib><creatorcontrib>Arronte, J. C.</creatorcontrib><creatorcontrib>Vázquez-Dorado, S.</creatorcontrib><creatorcontrib>Del Río, J. L.</creatorcontrib><creatorcontrib>de Carlos, A.</creatorcontrib><title>DNA barcoding of the genus Lepidion (Gadiformes: Moridae) with recognition of Lepidion eques as a junior synonym of Lepidion lepidion</title><title>Molecular ecology resources</title><addtitle>Mol Ecol Resour</addtitle><description>DNA sequences of cytochrome c oxidase I gene (COI) from Lepidion spp. were employed to test the efficiency of species identification. A sample of 32 individuals from five Lepidion species was sequenced and combined with 26 sequences from other BOLD projects. As a result, 58 Lepidion DNA sequences of the COI gene belonging to eight of the nine recognized Lepidion species were analysed. Sequences were aligned and formed seven clades in a Bayesian phylogenetic tree, where Lepidion lepidion and Lepidion eques grouped jointly. The Kimura 2‐parameter genetic distances, among congeners were, on average, 4.28%, 16 times greater than among conspecifics (0.27%). The main diagnostic meristic data of Lepidion spp. were compiled and a detailed morphological revision of the congeneric species L. eques and L. lepidion was made. The eye diameter was significantly different between L. eques and L. lepidion (P < 0.001). The number of anal fin rays ranged from 45 to 51 in L. lepidion and from 47 to 54 in L. eques, but no significant differences were obtained in the mean values of this variable (P = 0.07). According to the morphological and genetic analyses, the results strongly suggest that the Mediterranean codling L. lepidion and the North Atlantic codling L. eques are conspecific, making L. eques a junior synonym of L. lepidion.</description><subject>Animal and plant ecology</subject><subject>Animal, plant and microbial ecology</subject><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>cytochrome c oxidase subunit-I</subject><subject>DNA barcoding</subject><subject>DNA Barcoding, Taxonomic</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gadiformes</subject><subject>Gadiformes - classification</subject><subject>Gadiformes - genetics</subject><subject>General aspects</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Lepidion</subject><subject>Lepidion eques</subject><subject>Lepidion lepidion</subject><subject>Lepidion species</subject><subject>Moridae</subject><subject>Phylogeny</subject><subject>Population genetics, reproduction patterns</subject><subject>Sequence Analysis, DNA</subject><subject>Synecology</subject><issn>1755-098X</issn><issn>1755-0998</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkktvEzEUhUeIipbCmh2yhJDKYoof47GHXRVKipQEFiDYWR4_UoeJHewZlfwA_jeeJgyCDZYlH9nfubrWuUXxDMFLlNdrxCgtYdPwS4RhRR8UZ9PNw0nzr6fF45Q2ENawYdWj4hQTXGUDPyt-vl1dgVZGFbTzaxAs6G8NWBs_JLAwO6dd8OBiLrWzIW5NegOWITotzStw5_pbEI0Ka-_6EcvmyWK-DyYBmTfYDN6FCNLeB7_f_kV1R_GkOLGyS-bp8TwvPr-7_jS7KRcf5u9nV4vSEV7T0kBrtbJKKqpoayyklEtCq1YhCUlrCWK4IVZrQqjWklaItRBqZDjnlWkIOS8uDnV3MYwN9mLrkjJdJ70JQxKIIFrjqq7g_1HMOUG4wiijL_5BN2GIPn9kpBiBnFVNpp4fqaHdGi120W1l3IvfWWTg5RGQScnORumVS384lsPD9ViIHrg715n99I6gGEdCjKGLcQDE_UiI5fXqXmRfefC51Jsfk0_Gb6JmhFHxZTUXc8jhxxlmYkl-AbwMti4</recordid><startdate>201303</startdate><enddate>201303</enddate><creator>Bañón, R.</creator><creator>Arronte, J. C.</creator><creator>Vázquez-Dorado, S.</creator><creator>Del Río, J. L.</creator><creator>de Carlos, A.</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>7TM</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>201303</creationdate><title>DNA barcoding of the genus Lepidion (Gadiformes: Moridae) with recognition of Lepidion eques as a junior synonym of Lepidion lepidion</title><author>Bañón, R. ; Arronte, J. C. ; Vázquez-Dorado, S. ; Del Río, J. L. ; de Carlos, A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i3865-e0ffdcfcac5c5bef0558a354bc1a03bf317293fdd335dda5417b00d1e8884e933</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Animal and plant ecology</topic><topic>Animal, plant and microbial ecology</topic><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>cytochrome c oxidase subunit-I</topic><topic>DNA barcoding</topic><topic>DNA Barcoding, Taxonomic</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gadiformes</topic><topic>Gadiformes - classification</topic><topic>Gadiformes - genetics</topic><topic>General aspects</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Lepidion</topic><topic>Lepidion eques</topic><topic>Lepidion lepidion</topic><topic>Lepidion species</topic><topic>Moridae</topic><topic>Phylogeny</topic><topic>Population genetics, reproduction patterns</topic><topic>Sequence Analysis, DNA</topic><topic>Synecology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bañón, R.</creatorcontrib><creatorcontrib>Arronte, J. C.</creatorcontrib><creatorcontrib>Vázquez-Dorado, S.</creatorcontrib><creatorcontrib>Del Río, J. L.</creatorcontrib><creatorcontrib>de Carlos, A.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Oceanic Abstracts</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Molecular ecology resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bañón, R.</au><au>Arronte, J. C.</au><au>Vázquez-Dorado, S.</au><au>Del Río, J. L.</au><au>de Carlos, A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>DNA barcoding of the genus Lepidion (Gadiformes: Moridae) with recognition of Lepidion eques as a junior synonym of Lepidion lepidion</atitle><jtitle>Molecular ecology resources</jtitle><addtitle>Mol Ecol Resour</addtitle><date>2013-03</date><risdate>2013</risdate><volume>13</volume><issue>2</issue><spage>189</spage><epage>199</epage><pages>189-199</pages><issn>1755-098X</issn><eissn>1755-0998</eissn><abstract>DNA sequences of cytochrome c oxidase I gene (COI) from Lepidion spp. were employed to test the efficiency of species identification. A sample of 32 individuals from five Lepidion species was sequenced and combined with 26 sequences from other BOLD projects. As a result, 58 Lepidion DNA sequences of the COI gene belonging to eight of the nine recognized Lepidion species were analysed. Sequences were aligned and formed seven clades in a Bayesian phylogenetic tree, where Lepidion lepidion and Lepidion eques grouped jointly. The Kimura 2‐parameter genetic distances, among congeners were, on average, 4.28%, 16 times greater than among conspecifics (0.27%). The main diagnostic meristic data of Lepidion spp. were compiled and a detailed morphological revision of the congeneric species L. eques and L. lepidion was made. The eye diameter was significantly different between L. eques and L. lepidion (P < 0.001). The number of anal fin rays ranged from 45 to 51 in L. lepidion and from 47 to 54 in L. eques, but no significant differences were obtained in the mean values of this variable (P = 0.07). According to the morphological and genetic analyses, the results strongly suggest that the Mediterranean codling L. lepidion and the North Atlantic codling L. eques are conspecific, making L. eques a junior synonym of L. lepidion.</abstract><cop>Oxford</cop><pub>Blackwell Publishing Ltd</pub><pmid>23241208</pmid><doi>10.1111/1755-0998.12045</doi><tpages>11</tpages></addata></record> |
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| ispartof | Molecular ecology resources, 2013-03, Vol.13 (2), p.189-199 |
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| subjects | Animal and plant ecology Animal, plant and microbial ecology Animals Biological and medical sciences cytochrome c oxidase subunit-I DNA barcoding DNA Barcoding, Taxonomic Fundamental and applied biological sciences. Psychology Gadiformes Gadiformes - classification Gadiformes - genetics General aspects Genetics of eukaryotes. Biological and molecular evolution Lepidion Lepidion eques Lepidion lepidion Lepidion species Moridae Phylogeny Population genetics, reproduction patterns Sequence Analysis, DNA Synecology |
| title | DNA barcoding of the genus Lepidion (Gadiformes: Moridae) with recognition of Lepidion eques as a junior synonym of Lepidion lepidion |
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