Discovery of a multigene family of aquaporin silicon transporters in the primitive plant Equisetum arvense
Plants benefit greatly from silicon (Si) absorption provided that they contain Si transporters. The latter have recently been identified in the roots of some higher plants known to accumulate high concentrations of Si, and all share a high level of sequence identity. In this study, we searched for t...
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description | Plants benefit greatly from silicon (Si) absorption provided that they contain Si transporters. The latter have recently been identified in the roots of some higher plants known to accumulate high concentrations of Si, and all share a high level of sequence identity. In this study, we searched for transporters in the primitive vascular plant Equisetum arvense (horsetail), which is a valuable but neglected model plant for the study of Si absorption, as it has one of the highest Si concentrations in the plant kingdom. Our initial attempts to identify Si transporters based on sequence homology with transporters from higher plants proved unsuccessful, suggesting a divergent structure or property in horsetail transporters. Subsequently, through sequencing of the horsetail root transcriptome and a search using amino acid sequences conserved in plant aquaporins, we were able to identify a multigene family of aquaporin Si transporters. Comparison of known functional domains and phylogenetic analysis of sequences revealed that the horsetail proteins belong to a different group than higher‐plant Si transporters. In particular, the newly identified proteins contain a STAR pore as opposed to the GSGR pore common to all previously identified Si transporters. In order to determine its functionality, the proteins were heterologously expressed in both Xenopus oocytes and Arabidopsis, and the results showed that the horsetail proteins are extremely efficient a transporting Si. These findings offer new insights into the elusive properties of Si and its absorption by plants. |
doi_str_mv | 10.1111/j.1365-313X.2012.05082.x |
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The latter have recently been identified in the roots of some higher plants known to accumulate high concentrations of Si, and all share a high level of sequence identity. In this study, we searched for transporters in the primitive vascular plant Equisetum arvense (horsetail), which is a valuable but neglected model plant for the study of Si absorption, as it has one of the highest Si concentrations in the plant kingdom. Our initial attempts to identify Si transporters based on sequence homology with transporters from higher plants proved unsuccessful, suggesting a divergent structure or property in horsetail transporters. Subsequently, through sequencing of the horsetail root transcriptome and a search using amino acid sequences conserved in plant aquaporins, we were able to identify a multigene family of aquaporin Si transporters. Comparison of known functional domains and phylogenetic analysis of sequences revealed that the horsetail proteins belong to a different group than higher‐plant Si transporters. In particular, the newly identified proteins contain a STAR pore as opposed to the GSGR pore common to all previously identified Si transporters. In order to determine its functionality, the proteins were heterologously expressed in both Xenopus oocytes and Arabidopsis, and the results showed that the horsetail proteins are extremely efficient a transporting Si. These findings offer new insights into the elusive properties of Si and its absorption by plants.</description><identifier>ISSN: 0960-7412</identifier><identifier>EISSN: 1365-313X</identifier><identifier>DOI: 10.1111/j.1365-313X.2012.05082.x</identifier><identifier>PMID: 22712876</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Amino Acid Sequence ; amino acid sequences ; Amino acids ; Animals ; Aquaporins ; Aquaporins - genetics ; Aquaporins - metabolism ; Arabidopsis ; Arabidopsis - genetics ; Arabidopsis - metabolism ; Base Sequence ; Biological and medical sciences ; Biological Transport ; conserved sequences ; Equisetum - genetics ; Equisetum - metabolism ; Equisetum arvense ; Female ; Fundamental and applied biological sciences. Psychology ; Gene Expression ; Genetics ; Homology ; horsetail ; Models, Molecular ; Molecular Sequence Data ; Multigene Family ; NIP aquaporin ; Oocytes ; Organ Specificity ; Phylogeny ; Plant biology ; Plant physiology and development ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Roots - genetics ; Plant Roots - metabolism ; Plant Shoots - genetics ; Plant Shoots - metabolism ; Plants ; Pores ; Protein Structure, Tertiary ; Proteins ; RNA, Plant - genetics ; RNA‐Seq ; Roots ; Sequence Alignment ; Sequence Analysis, DNA ; sequence homology ; Silicon ; Silicon - metabolism ; Transcriptome ; transporter ; transporters ; Xenopus - genetics ; Xenopus - metabolism</subject><ispartof>The Plant journal : for cell and molecular biology, 2012-10, Vol.72 (2), p.320-330</ispartof><rights>2012 The Authors. The Plant Journal © 2012 Blackwell Publishing Ltd</rights><rights>2015 INIST-CNRS</rights><rights>2012 The Authors. 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The latter have recently been identified in the roots of some higher plants known to accumulate high concentrations of Si, and all share a high level of sequence identity. In this study, we searched for transporters in the primitive vascular plant Equisetum arvense (horsetail), which is a valuable but neglected model plant for the study of Si absorption, as it has one of the highest Si concentrations in the plant kingdom. Our initial attempts to identify Si transporters based on sequence homology with transporters from higher plants proved unsuccessful, suggesting a divergent structure or property in horsetail transporters. Subsequently, through sequencing of the horsetail root transcriptome and a search using amino acid sequences conserved in plant aquaporins, we were able to identify a multigene family of aquaporin Si transporters. Comparison of known functional domains and phylogenetic analysis of sequences revealed that the horsetail proteins belong to a different group than higher‐plant Si transporters. In particular, the newly identified proteins contain a STAR pore as opposed to the GSGR pore common to all previously identified Si transporters. In order to determine its functionality, the proteins were heterologously expressed in both Xenopus oocytes and Arabidopsis, and the results showed that the horsetail proteins are extremely efficient a transporting Si. These findings offer new insights into the elusive properties of Si and its absorption by plants.</description><subject>Amino Acid Sequence</subject><subject>amino acid sequences</subject><subject>Amino acids</subject><subject>Animals</subject><subject>Aquaporins</subject><subject>Aquaporins - genetics</subject><subject>Aquaporins - metabolism</subject><subject>Arabidopsis</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biological Transport</subject><subject>conserved sequences</subject><subject>Equisetum - genetics</subject><subject>Equisetum - metabolism</subject><subject>Equisetum arvense</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression</subject><subject>Genetics</subject><subject>Homology</subject><subject>horsetail</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Multigene Family</subject><subject>NIP aquaporin</subject><subject>Oocytes</subject><subject>Organ Specificity</subject><subject>Phylogeny</subject><subject>Plant biology</subject><subject>Plant physiology and development</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Roots - genetics</subject><subject>Plant Roots - metabolism</subject><subject>Plant Shoots - genetics</subject><subject>Plant Shoots - metabolism</subject><subject>Plants</subject><subject>Pores</subject><subject>Protein Structure, Tertiary</subject><subject>Proteins</subject><subject>RNA, Plant - genetics</subject><subject>RNA‐Seq</subject><subject>Roots</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>Silicon</subject><subject>Silicon - metabolism</subject><subject>Transcriptome</subject><subject>transporter</subject><subject>transporters</subject><subject>Xenopus - genetics</subject><subject>Xenopus - metabolism</subject><issn>0960-7412</issn><issn>1365-313X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkd-L1DAQx4Mo3nr6L2hABF9aZ5K2aR58kPO8Uw4UvAPfQtpNziz9sZu06-1_b9quJwjCJQ8ZJp9vJjNfQihCinG926TIizzhyH-kDJClkEPJ0rtHZHV_8ZisQBaQiAzZCXkWwgYABS-yp-SEMYGsFMWKbD66UPd74w-0t1TTdmwGd2s6Q61uXbNkd6Pe9t51NLjG1X1HB6-7EFOD8YHG_PDT0K13rRvcPkaN7gZ6vhtdMMPYUu33pgvmOXlidRPMi-N5Sm4-nV-fXSZXXy8-n324SupcZCypJLOaryvB87quLOMc1pJVFgtrwMhKV-UaS8OwFCVWIFHWBYdcaqELqEzOT8nb5d2t73ejCYNqY4-mib8y_RgUMoZxSjJ_AIrICsFFlkX09T_oph99FxuZqXnLSJULVfs-BG-smsai_UEhTByqjZocUpNDarJOzdapuyh9eSwwVq1Z3wv_eBWBN0dAh1o3NnpQu_CXK_ICyrmp9wv3yzXm8OAPqOtvX6Yo6l8teqt7pW99rHHzPZIZAHCJ8yz-TzCQkPPfw47HJg</recordid><startdate>201210</startdate><enddate>201210</enddate><creator>Grégoire, Caroline</creator><creator>Rémus‐Borel, Wilfried</creator><creator>Vivancos, Julien</creator><creator>Labbé, Caroline</creator><creator>Belzile, François</creator><creator>Bélanger, Richard R</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201210</creationdate><title>Discovery of a multigene family of aquaporin silicon transporters in the primitive plant Equisetum arvense</title><author>Grégoire, Caroline ; Rémus‐Borel, Wilfried ; Vivancos, Julien ; Labbé, Caroline ; Belzile, François ; Bélanger, Richard R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5742-b92fa3db735ccbf2330d92bf16fe0e9bab8d18e218781b0919c63059a7a60be53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Amino Acid Sequence</topic><topic>amino acid sequences</topic><topic>Amino acids</topic><topic>Animals</topic><topic>Aquaporins</topic><topic>Aquaporins - genetics</topic><topic>Aquaporins - metabolism</topic><topic>Arabidopsis</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - metabolism</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biological Transport</topic><topic>conserved sequences</topic><topic>Equisetum - genetics</topic><topic>Equisetum - metabolism</topic><topic>Equisetum arvense</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression</topic><topic>Genetics</topic><topic>Homology</topic><topic>horsetail</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Multigene Family</topic><topic>NIP aquaporin</topic><topic>Oocytes</topic><topic>Organ Specificity</topic><topic>Phylogeny</topic><topic>Plant biology</topic><topic>Plant physiology and development</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Roots - genetics</topic><topic>Plant Roots - metabolism</topic><topic>Plant Shoots - genetics</topic><topic>Plant Shoots - metabolism</topic><topic>Plants</topic><topic>Pores</topic><topic>Protein Structure, Tertiary</topic><topic>Proteins</topic><topic>RNA, Plant - genetics</topic><topic>RNA‐Seq</topic><topic>Roots</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>Silicon</topic><topic>Silicon - metabolism</topic><topic>Transcriptome</topic><topic>transporter</topic><topic>transporters</topic><topic>Xenopus - genetics</topic><topic>Xenopus - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Grégoire, Caroline</creatorcontrib><creatorcontrib>Rémus‐Borel, Wilfried</creatorcontrib><creatorcontrib>Vivancos, Julien</creatorcontrib><creatorcontrib>Labbé, Caroline</creatorcontrib><creatorcontrib>Belzile, François</creatorcontrib><creatorcontrib>Bélanger, Richard R</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Plant journal : for cell and molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Grégoire, Caroline</au><au>Rémus‐Borel, Wilfried</au><au>Vivancos, Julien</au><au>Labbé, Caroline</au><au>Belzile, François</au><au>Bélanger, Richard R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Discovery of a multigene family of aquaporin silicon transporters in the primitive plant Equisetum arvense</atitle><jtitle>The Plant journal : for cell and molecular biology</jtitle><addtitle>Plant J</addtitle><date>2012-10</date><risdate>2012</risdate><volume>72</volume><issue>2</issue><spage>320</spage><epage>330</epage><pages>320-330</pages><issn>0960-7412</issn><eissn>1365-313X</eissn><abstract>Plants benefit greatly from silicon (Si) absorption provided that they contain Si transporters. The latter have recently been identified in the roots of some higher plants known to accumulate high concentrations of Si, and all share a high level of sequence identity. In this study, we searched for transporters in the primitive vascular plant Equisetum arvense (horsetail), which is a valuable but neglected model plant for the study of Si absorption, as it has one of the highest Si concentrations in the plant kingdom. Our initial attempts to identify Si transporters based on sequence homology with transporters from higher plants proved unsuccessful, suggesting a divergent structure or property in horsetail transporters. Subsequently, through sequencing of the horsetail root transcriptome and a search using amino acid sequences conserved in plant aquaporins, we were able to identify a multigene family of aquaporin Si transporters. Comparison of known functional domains and phylogenetic analysis of sequences revealed that the horsetail proteins belong to a different group than higher‐plant Si transporters. In particular, the newly identified proteins contain a STAR pore as opposed to the GSGR pore common to all previously identified Si transporters. In order to determine its functionality, the proteins were heterologously expressed in both Xenopus oocytes and Arabidopsis, and the results showed that the horsetail proteins are extremely efficient a transporting Si. These findings offer new insights into the elusive properties of Si and its absorption by plants.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>22712876</pmid><doi>10.1111/j.1365-313X.2012.05082.x</doi><tpages>11</tpages></addata></record> |
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subjects | Amino Acid Sequence amino acid sequences Amino acids Animals Aquaporins Aquaporins - genetics Aquaporins - metabolism Arabidopsis Arabidopsis - genetics Arabidopsis - metabolism Base Sequence Biological and medical sciences Biological Transport conserved sequences Equisetum - genetics Equisetum - metabolism Equisetum arvense Female Fundamental and applied biological sciences. Psychology Gene Expression Genetics Homology horsetail Models, Molecular Molecular Sequence Data Multigene Family NIP aquaporin Oocytes Organ Specificity Phylogeny Plant biology Plant physiology and development Plant Proteins - genetics Plant Proteins - metabolism Plant Roots - genetics Plant Roots - metabolism Plant Shoots - genetics Plant Shoots - metabolism Plants Pores Protein Structure, Tertiary Proteins RNA, Plant - genetics RNA‐Seq Roots Sequence Alignment Sequence Analysis, DNA sequence homology Silicon Silicon - metabolism Transcriptome transporter transporters Xenopus - genetics Xenopus - metabolism |
title | Discovery of a multigene family of aquaporin silicon transporters in the primitive plant Equisetum arvense |
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