Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake

A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum p...

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Veröffentlicht in:International journal of systematic and evolutionary microbiology 2012-11, Vol.62 (Pt 11), p.2618-2623
Hauptverfasser: Zhao, Baisuo, Chen, Shulin
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description A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).
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Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.038315-0</identifier><identifier>PMID: 22199219</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>acetates ; Bacterial Typing Techniques ; Bacteriology ; Bacteroidetes - classification ; Bacteroidetes - genetics ; Bacteroidetes - isolation &amp; purification ; Base Composition ; Biological and medical sciences ; Carbohydrates - analysis ; carbon ; cellobiose ; chemotaxonomy ; DNA ; DNA, Bacterial - genetics ; energy ; fatty acids ; Fatty Acids - analysis ; fermentation ; fructose ; Fundamental and applied biological sciences. Psychology ; galactose ; genes ; Geologic Sediments - microbiology ; glucose ; lakes ; Lakes - microbiology ; malates ; maltose ; Marinilabilia ; Microbiology ; Molecular Sequence Data ; new genus ; new species ; nucleotide sequences ; Phylogeny ; propionic acid ; ribose ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; sediments ; Sequence Analysis, DNA ; sequence homology ; sodium ; sorbitol ; sucrose ; Systematics ; trehalose ; Washington ; xylan ; xylanolytic microorganisms ; xylose ; yeast extract</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-11, Vol.62 (Pt 11), p.2618-2623</ispartof><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c415t-dc8eae639291980b051fb02245a928f25a1e2e0a243061cef7c70c0a63b4062f3</citedby><cites>FETCH-LOGICAL-c415t-dc8eae639291980b051fb02245a928f25a1e2e0a243061cef7c70c0a63b4062f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=26589245$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22199219$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Baisuo</creatorcontrib><creatorcontrib>Chen, Shulin</creatorcontrib><title>Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).</description><subject>acetates</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - genetics</subject><subject>Bacteroidetes - isolation &amp; purification</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Carbohydrates - analysis</subject><subject>carbon</subject><subject>cellobiose</subject><subject>chemotaxonomy</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>energy</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>fermentation</subject><subject>fructose</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>galactose</subject><subject>genes</subject><subject>Geologic Sediments - microbiology</subject><subject>glucose</subject><subject>lakes</subject><subject>Lakes - microbiology</subject><subject>malates</subject><subject>maltose</subject><subject>Marinilabilia</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new genus</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>propionic acid</subject><subject>ribose</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>sediments</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>sodium</subject><subject>sorbitol</subject><subject>sucrose</subject><subject>Systematics</subject><subject>trehalose</subject><subject>Washington</subject><subject>xylan</subject><subject>xylanolytic microorganisms</subject><subject>xylose</subject><subject>yeast extract</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkc1u1DAUhS0EomVgyxK8QeqChGsn9sTLqqJQqVIXpWvrxmMPbp042AliHqDvjYeZAgvr_n0-8j0m5C2DmoFSn_x9rqGGpmuYqOAZOWWtlJWApn3-X35CXuV8D1AaAC_JCedMqXJOyeN5eMDgZwwWacYpjj6gWTLd2rGmY_xZf6R5espwpLEPfouzDbtSoU2x96YM_qhM333YV792AccYdrM3tEcz2-SXgboUB4p0KHcGb_azHDdIAz7Y1-SFw5Dtm2NckbvLz98uvlbXN1-uLs6vK9MyMVcb01m0slFcMdVBD4K5HjhvBSreOS6QWW4BeduAZMa6tVmDAZRN34LkrlmRs4PulOKPxeZZDz4bG8pzbVyyZoxL2YACXtD6gJoUc07W6Sn5AdNOM9B763WxXoM-WF_Cirw7ai_9YDd_8SevC_DhCGA2GFzC0fj8j5OiU2WVwr0_cA6jxm0qzN0tByb2_yfYWjW_AXDjle4</recordid><startdate>20121101</startdate><enddate>20121101</enddate><creator>Zhao, Baisuo</creator><creator>Chen, Shulin</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20121101</creationdate><title>Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake</title><author>Zhao, Baisuo ; Chen, Shulin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c415t-dc8eae639291980b051fb02245a928f25a1e2e0a243061cef7c70c0a63b4062f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>acetates</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - genetics</topic><topic>Bacteroidetes - isolation &amp; purification</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Carbohydrates - analysis</topic><topic>carbon</topic><topic>cellobiose</topic><topic>chemotaxonomy</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>energy</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>fermentation</topic><topic>fructose</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>galactose</topic><topic>genes</topic><topic>Geologic Sediments - microbiology</topic><topic>glucose</topic><topic>lakes</topic><topic>Lakes - microbiology</topic><topic>malates</topic><topic>maltose</topic><topic>Marinilabilia</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new genus</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>propionic acid</topic><topic>ribose</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>sediments</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>sodium</topic><topic>sorbitol</topic><topic>sucrose</topic><topic>Systematics</topic><topic>trehalose</topic><topic>Washington</topic><topic>xylan</topic><topic>xylanolytic microorganisms</topic><topic>xylose</topic><topic>yeast extract</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Baisuo</creatorcontrib><creatorcontrib>Chen, Shulin</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Baisuo</au><au>Chen, Shulin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-11-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 11</issue><spage>2618</spage><epage>2623</epage><pages>2618-2623</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>22199219</pmid><doi>10.1099/ijs.0.038315-0</doi><tpages>6</tpages></addata></record>
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source MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection
subjects acetates
Bacterial Typing Techniques
Bacteriology
Bacteroidetes - classification
Bacteroidetes - genetics
Bacteroidetes - isolation & purification
Base Composition
Biological and medical sciences
Carbohydrates - analysis
carbon
cellobiose
chemotaxonomy
DNA
DNA, Bacterial - genetics
energy
fatty acids
Fatty Acids - analysis
fermentation
fructose
Fundamental and applied biological sciences. Psychology
galactose
genes
Geologic Sediments - microbiology
glucose
lakes
Lakes - microbiology
malates
maltose
Marinilabilia
Microbiology
Molecular Sequence Data
new genus
new species
nucleotide sequences
Phylogeny
propionic acid
ribose
ribosomal RNA
RNA, Ribosomal, 16S - genetics
sediments
Sequence Analysis, DNA
sequence homology
sodium
sorbitol
sucrose
Systematics
trehalose
Washington
xylan
xylanolytic microorganisms
xylose
yeast extract
title Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake
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