Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake
A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum p...
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description | A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T). |
doi_str_mv | 10.1099/ijs.0.038315-0 |
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Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.038315-0</identifier><identifier>PMID: 22199219</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>acetates ; Bacterial Typing Techniques ; Bacteriology ; Bacteroidetes - classification ; Bacteroidetes - genetics ; Bacteroidetes - isolation & purification ; Base Composition ; Biological and medical sciences ; Carbohydrates - analysis ; carbon ; cellobiose ; chemotaxonomy ; DNA ; DNA, Bacterial - genetics ; energy ; fatty acids ; Fatty Acids - analysis ; fermentation ; fructose ; Fundamental and applied biological sciences. Psychology ; galactose ; genes ; Geologic Sediments - microbiology ; glucose ; lakes ; Lakes - microbiology ; malates ; maltose ; Marinilabilia ; Microbiology ; Molecular Sequence Data ; new genus ; new species ; nucleotide sequences ; Phylogeny ; propionic acid ; ribose ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; sediments ; Sequence Analysis, DNA ; sequence homology ; sodium ; sorbitol ; sucrose ; Systematics ; trehalose ; Washington ; xylan ; xylanolytic microorganisms ; xylose ; yeast extract</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-11, Vol.62 (Pt 11), p.2618-2623</ispartof><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c415t-dc8eae639291980b051fb02245a928f25a1e2e0a243061cef7c70c0a63b4062f3</citedby><cites>FETCH-LOGICAL-c415t-dc8eae639291980b051fb02245a928f25a1e2e0a243061cef7c70c0a63b4062f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26589245$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22199219$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Baisuo</creatorcontrib><creatorcontrib>Chen, Shulin</creatorcontrib><title>Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).</description><subject>acetates</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - genetics</subject><subject>Bacteroidetes - isolation & purification</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Carbohydrates - analysis</subject><subject>carbon</subject><subject>cellobiose</subject><subject>chemotaxonomy</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>energy</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>fermentation</subject><subject>fructose</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>galactose</subject><subject>genes</subject><subject>Geologic Sediments - microbiology</subject><subject>glucose</subject><subject>lakes</subject><subject>Lakes - microbiology</subject><subject>malates</subject><subject>maltose</subject><subject>Marinilabilia</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new genus</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>propionic acid</subject><subject>ribose</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>sediments</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>sodium</subject><subject>sorbitol</subject><subject>sucrose</subject><subject>Systematics</subject><subject>trehalose</subject><subject>Washington</subject><subject>xylan</subject><subject>xylanolytic microorganisms</subject><subject>xylose</subject><subject>yeast extract</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkc1u1DAUhS0EomVgyxK8QeqChGsn9sTLqqJQqVIXpWvrxmMPbp042AliHqDvjYeZAgvr_n0-8j0m5C2DmoFSn_x9rqGGpmuYqOAZOWWtlJWApn3-X35CXuV8D1AaAC_JCedMqXJOyeN5eMDgZwwWacYpjj6gWTLd2rGmY_xZf6R5espwpLEPfouzDbtSoU2x96YM_qhM333YV792AccYdrM3tEcz2-SXgboUB4p0KHcGb_azHDdIAz7Y1-SFw5Dtm2NckbvLz98uvlbXN1-uLs6vK9MyMVcb01m0slFcMdVBD4K5HjhvBSreOS6QWW4BeduAZMa6tVmDAZRN34LkrlmRs4PulOKPxeZZDz4bG8pzbVyyZoxL2YACXtD6gJoUc07W6Sn5AdNOM9B763WxXoM-WF_Cirw7ai_9YDd_8SevC_DhCGA2GFzC0fj8j5OiU2WVwr0_cA6jxm0qzN0tByb2_yfYWjW_AXDjle4</recordid><startdate>20121101</startdate><enddate>20121101</enddate><creator>Zhao, Baisuo</creator><creator>Chen, Shulin</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20121101</creationdate><title>Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake</title><author>Zhao, Baisuo ; Chen, Shulin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c415t-dc8eae639291980b051fb02245a928f25a1e2e0a243061cef7c70c0a63b4062f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>acetates</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - genetics</topic><topic>Bacteroidetes - isolation & purification</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Carbohydrates - analysis</topic><topic>carbon</topic><topic>cellobiose</topic><topic>chemotaxonomy</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>energy</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>fermentation</topic><topic>fructose</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>galactose</topic><topic>genes</topic><topic>Geologic Sediments - microbiology</topic><topic>glucose</topic><topic>lakes</topic><topic>Lakes - microbiology</topic><topic>malates</topic><topic>maltose</topic><topic>Marinilabilia</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new genus</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>propionic acid</topic><topic>ribose</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>sediments</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>sodium</topic><topic>sorbitol</topic><topic>sucrose</topic><topic>Systematics</topic><topic>trehalose</topic><topic>Washington</topic><topic>xylan</topic><topic>xylanolytic microorganisms</topic><topic>xylose</topic><topic>yeast extract</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Baisuo</creatorcontrib><creatorcontrib>Chen, Shulin</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Baisuo</au><au>Chen, Shulin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-11-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 11</issue><spage>2618</spage><epage>2623</epage><pages>2618-2623</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-positive, obligately anaerobic, motile, slender, flexible rod, designated SC/BZ-SP2T, was isolated from mixed alkaline water and sediment of Soap Lake, Washington State, USA. Strain SC/BZ-SP2T formed salmon to pink colonies and was alkaliphilic. The isolate grew at pH35 °C 7.5–10.5 (optimum pH35 °C 9.7), at 8–40 °C (optimum 35–37 °C) and with 0.35–1.38 M Na+ (optimum 0.44–0.69 M Na+). The isolate utilized l-arabinose, d-ribose, d-xylose, d-fructose, d-mannose, d-galactose, cellobiose, maltose, sucrose, trehalose, sorbitol, xylan, malate and yeast extract as carbon and energy sources; best growth was observed with l-arabinose, cellobiose, maltose and trehalose. The major fermentation products from beechwood xylan were propionate and acetate. The dominant fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C17 : 0 3-OH, C17 : 0 3-OH and C15 : 0 3-OH. The cell-wall sugars were ribose, xylose, galactose and glucose. Thiosulfate and sulfite could be reduced to sulfide. The genomic DNA G+C content was 39.5±0.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SC/BZ-SP2T belonged to the family Marinilabiliaceae of the order Bacteroidales, class Bacteroidia. The most closely related strains were Alkaliflexus imshenetskii Z-7010T (91.8 % 16S rRNA gene sequence similarity), Marinilabilia salmonicolor Cy s1T (91.0 %) and Anaerophaga thermohalophila Fru22T (90.4 %). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SC/BZ-SP2T represents a novel species in a new genus of the family Marinilabiliaceae, for which the name Alkalitalea saponilacus gen. nov., sp. nov. is proposed. The type strain of Alkalitalea saponilacus is SC/BZ-SP2T ( = ATCC BAA-2172T = DSM 24412T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>22199219</pmid><doi>10.1099/ijs.0.038315-0</doi><tpages>6</tpages></addata></record> |
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subjects | acetates Bacterial Typing Techniques Bacteriology Bacteroidetes - classification Bacteroidetes - genetics Bacteroidetes - isolation & purification Base Composition Biological and medical sciences Carbohydrates - analysis carbon cellobiose chemotaxonomy DNA DNA, Bacterial - genetics energy fatty acids Fatty Acids - analysis fermentation fructose Fundamental and applied biological sciences. Psychology galactose genes Geologic Sediments - microbiology glucose lakes Lakes - microbiology malates maltose Marinilabilia Microbiology Molecular Sequence Data new genus new species nucleotide sequences Phylogeny propionic acid ribose ribosomal RNA RNA, Ribosomal, 16S - genetics sediments Sequence Analysis, DNA sequence homology sodium sorbitol sucrose Systematics trehalose Washington xylan xylanolytic microorganisms xylose yeast extract |
title | Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake |
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