Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant
A Gram-stain-positive, strictly aerobic, short-rod-shaped, non-motile strain (designated MJ32T) was isolated from a sludge sample of the Daejeon sewage disposal plant in South Korea. A polyphasic approach was applied to study the taxonomic position of strain MJ32T. Strain MJ32T showed highest 16S rR...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2012-11, Vol.62 (Pt 11), p.2703-2709 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Srinivasan, Sathiyaraj Park, Giho Yang, Hyejin Hwang, Supyong Bae, Yoonjung Jung, Yong-An Kim, Myung Kyum Lee, Myungjin |
| description | A Gram-stain-positive, strictly aerobic, short-rod-shaped, non-motile strain (designated MJ32T) was isolated from a sludge sample of the Daejeon sewage disposal plant in South Korea. A polyphasic approach was applied to study the taxonomic position of strain MJ32T. Strain MJ32T showed highest 16S rRNA gene sequence similarity to Gordonia hirsuta DSM 44140T (98.1 %) and Gordonia hydrophobica DSM 44015T (97.0 %); levels of sequence similarity to the type strains of other recognized Gordonia species were less than 97.0 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MJ32T belonged to the clade formed by members of the genus Gordonia in the family Gordoniaceae. The G+C content of the genomic DNA of strain MJ32T was 69.2 mol%. Chemotaxonomically, strain MJ32T showed features typical of the genus Gordonia. The predominant respiratory quinone was MK-9(H2), the mycolic acids present had C56–C60 carbon atoms, and the major fatty acids were C16 : 0 (34.6 %), tuberculostearic acid (21.8 %), C16 : 1ω7c (19.5 %) and C18 : 1ω9c (12.7 %). The peptidoglycan type was based on meso-2,6-diaminopimelic acid as the diagnostic diamino acid with glycolated sugars. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, strain MJ32T is considered to represent a novel species of the genus Gordonia, for which the name Gordonia caeni sp. nov. is proposed. The type strain is MJ32T ( = KCTC 19771T = JCM 16923T). |
| doi_str_mv | 10.1099/ijs.0.029736-0 |
| format | Article |
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A polyphasic approach was applied to study the taxonomic position of strain MJ32T. Strain MJ32T showed highest 16S rRNA gene sequence similarity to Gordonia hirsuta DSM 44140T (98.1 %) and Gordonia hydrophobica DSM 44015T (97.0 %); levels of sequence similarity to the type strains of other recognized Gordonia species were less than 97.0 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MJ32T belonged to the clade formed by members of the genus Gordonia in the family Gordoniaceae. The G+C content of the genomic DNA of strain MJ32T was 69.2 mol%. Chemotaxonomically, strain MJ32T showed features typical of the genus Gordonia. The predominant respiratory quinone was MK-9(H2), the mycolic acids present had C56–C60 carbon atoms, and the major fatty acids were C16 : 0 (34.6 %), tuberculostearic acid (21.8 %), C16 : 1ω7c (19.5 %) and C18 : 1ω9c (12.7 %). The peptidoglycan type was based on meso-2,6-diaminopimelic acid as the diagnostic diamino acid with glycolated sugars. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, strain MJ32T is considered to represent a novel species of the genus Gordonia, for which the name Gordonia caeni sp. nov. is proposed. The type strain is MJ32T ( = KCTC 19771T = JCM 16923T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.029736-0</identifier><identifier>PMID: 22228669</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; carbon ; DNA ; DNA, Bacterial - genetics ; fatty acid composition ; fatty acids ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; genes ; Gordonia Bacterium - classification ; Gordonia Bacterium - genetics ; Gordonia Bacterium - isolation & purification ; Gordonia hirsuta ; Gordonia hydrophobica ; Microbiology ; Molecular Sequence Data ; new species ; Nucleic Acid Hybridization ; nucleotide sequences ; Peptidoglycan - analysis ; peptidoglycans ; Phylogeny ; Quinones - analysis ; Republic of Korea ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; sequence homology ; sewage ; Sewage - microbiology ; sewage sludge ; sugars ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-11, Vol.62 (Pt 11), p.2703-2709</ispartof><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c389t-535768b2b135ae2d8d6c12f584a13c9528de9a9a3298cf6d9c694e934c6096a13</citedby><cites>FETCH-LOGICAL-c389t-535768b2b135ae2d8d6c12f584a13c9528de9a9a3298cf6d9c694e934c6096a13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26589259$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22228669$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Srinivasan, Sathiyaraj</creatorcontrib><creatorcontrib>Park, Giho</creatorcontrib><creatorcontrib>Yang, Hyejin</creatorcontrib><creatorcontrib>Hwang, Supyong</creatorcontrib><creatorcontrib>Bae, Yoonjung</creatorcontrib><creatorcontrib>Jung, Yong-An</creatorcontrib><creatorcontrib>Kim, Myung Kyum</creatorcontrib><creatorcontrib>Lee, Myungjin</creatorcontrib><title>Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-stain-positive, strictly aerobic, short-rod-shaped, non-motile strain (designated MJ32T) was isolated from a sludge sample of the Daejeon sewage disposal plant in South Korea. A polyphasic approach was applied to study the taxonomic position of strain MJ32T. Strain MJ32T showed highest 16S rRNA gene sequence similarity to Gordonia hirsuta DSM 44140T (98.1 %) and Gordonia hydrophobica DSM 44015T (97.0 %); levels of sequence similarity to the type strains of other recognized Gordonia species were less than 97.0 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MJ32T belonged to the clade formed by members of the genus Gordonia in the family Gordoniaceae. The G+C content of the genomic DNA of strain MJ32T was 69.2 mol%. Chemotaxonomically, strain MJ32T showed features typical of the genus Gordonia. The predominant respiratory quinone was MK-9(H2), the mycolic acids present had C56–C60 carbon atoms, and the major fatty acids were C16 : 0 (34.6 %), tuberculostearic acid (21.8 %), C16 : 1ω7c (19.5 %) and C18 : 1ω9c (12.7 %). The peptidoglycan type was based on meso-2,6-diaminopimelic acid as the diagnostic diamino acid with glycolated sugars. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, strain MJ32T is considered to represent a novel species of the genus Gordonia, for which the name Gordonia caeni sp. nov. is proposed. The type strain is MJ32T ( = KCTC 19771T = JCM 16923T).</description><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>carbon</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>fatty acid composition</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genes</subject><subject>Gordonia Bacterium - classification</subject><subject>Gordonia Bacterium - genetics</subject><subject>Gordonia Bacterium - isolation & purification</subject><subject>Gordonia hirsuta</subject><subject>Gordonia hydrophobica</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new species</subject><subject>Nucleic Acid Hybridization</subject><subject>nucleotide sequences</subject><subject>Peptidoglycan - analysis</subject><subject>peptidoglycans</subject><subject>Phylogeny</subject><subject>Quinones - analysis</subject><subject>Republic of Korea</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>sewage</subject><subject>Sewage - microbiology</subject><subject>sewage sludge</subject><subject>sugars</subject><subject>Systematics</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpN0UtPAyEQB3BiND6qV4_KxcSDu_JY6HI0jVoTEw_qmUyBNWu2y8q0Gr-91NYHFybkx2T4Q8gxZyVnxly2r1iykgkzlrpgW2SfV1oXislq-1-9Rw4QXxnLB4ztkj2RV6212SfT25h87FugDkLfUhxK2sf38oK2GDtYBE-bFOcUu6V_CTQ2FCiGD8i1b3GICB0dOugXh2SngQ7D0WYfkeeb66fJtLh_uL2bXN0XTtZmUSipxrqeiRmXCoLwtdeOi0bVFXDpjBK1DwYMSGFq12hvnDZVMLJymhmdzYicr_sOKb4tAy7svEUXujxDiEu0nAutv1-XabmmLkXEFBo7pHYO6dNyZlfp2ZyeZXadnmX5wsmm93I2D_6X_8SVwdkGADromgS9a_HPaVUboVbudO0aiBZeUjbPj4JxtfoCxY2UX0ONf0c</recordid><startdate>20121101</startdate><enddate>20121101</enddate><creator>Srinivasan, Sathiyaraj</creator><creator>Park, Giho</creator><creator>Yang, Hyejin</creator><creator>Hwang, Supyong</creator><creator>Bae, Yoonjung</creator><creator>Jung, Yong-An</creator><creator>Kim, Myung Kyum</creator><creator>Lee, Myungjin</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20121101</creationdate><title>Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant</title><author>Srinivasan, Sathiyaraj ; Park, Giho ; Yang, Hyejin ; Hwang, Supyong ; Bae, Yoonjung ; Jung, Yong-An ; Kim, Myung Kyum ; Lee, Myungjin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c389t-535768b2b135ae2d8d6c12f584a13c9528de9a9a3298cf6d9c694e934c6096a13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>carbon</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>fatty acid composition</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genes</topic><topic>Gordonia Bacterium - classification</topic><topic>Gordonia Bacterium - genetics</topic><topic>Gordonia Bacterium - isolation & purification</topic><topic>Gordonia hirsuta</topic><topic>Gordonia hydrophobica</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new species</topic><topic>Nucleic Acid Hybridization</topic><topic>nucleotide sequences</topic><topic>Peptidoglycan - analysis</topic><topic>peptidoglycans</topic><topic>Phylogeny</topic><topic>Quinones - analysis</topic><topic>Republic of Korea</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>sewage</topic><topic>Sewage - microbiology</topic><topic>sewage sludge</topic><topic>sugars</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Srinivasan, Sathiyaraj</creatorcontrib><creatorcontrib>Park, Giho</creatorcontrib><creatorcontrib>Yang, Hyejin</creatorcontrib><creatorcontrib>Hwang, Supyong</creatorcontrib><creatorcontrib>Bae, Yoonjung</creatorcontrib><creatorcontrib>Jung, Yong-An</creatorcontrib><creatorcontrib>Kim, Myung Kyum</creatorcontrib><creatorcontrib>Lee, Myungjin</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Srinivasan, Sathiyaraj</au><au>Park, Giho</au><au>Yang, Hyejin</au><au>Hwang, Supyong</au><au>Bae, Yoonjung</au><au>Jung, Yong-An</au><au>Kim, Myung Kyum</au><au>Lee, Myungjin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-11-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 11</issue><spage>2703</spage><epage>2709</epage><pages>2703-2709</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-stain-positive, strictly aerobic, short-rod-shaped, non-motile strain (designated MJ32T) was isolated from a sludge sample of the Daejeon sewage disposal plant in South Korea. A polyphasic approach was applied to study the taxonomic position of strain MJ32T. Strain MJ32T showed highest 16S rRNA gene sequence similarity to Gordonia hirsuta DSM 44140T (98.1 %) and Gordonia hydrophobica DSM 44015T (97.0 %); levels of sequence similarity to the type strains of other recognized Gordonia species were less than 97.0 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MJ32T belonged to the clade formed by members of the genus Gordonia in the family Gordoniaceae. The G+C content of the genomic DNA of strain MJ32T was 69.2 mol%. Chemotaxonomically, strain MJ32T showed features typical of the genus Gordonia. The predominant respiratory quinone was MK-9(H2), the mycolic acids present had C56–C60 carbon atoms, and the major fatty acids were C16 : 0 (34.6 %), tuberculostearic acid (21.8 %), C16 : 1ω7c (19.5 %) and C18 : 1ω9c (12.7 %). The peptidoglycan type was based on meso-2,6-diaminopimelic acid as the diagnostic diamino acid with glycolated sugars. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, strain MJ32T is considered to represent a novel species of the genus Gordonia, for which the name Gordonia caeni sp. nov. is proposed. The type strain is MJ32T ( = KCTC 19771T = JCM 16923T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>22228669</pmid><doi>10.1099/ijs.0.029736-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences carbon DNA DNA, Bacterial - genetics fatty acid composition fatty acids Fatty Acids - analysis Fundamental and applied biological sciences. Psychology genes Gordonia Bacterium - classification Gordonia Bacterium - genetics Gordonia Bacterium - isolation & purification Gordonia hirsuta Gordonia hydrophobica Microbiology Molecular Sequence Data new species Nucleic Acid Hybridization nucleotide sequences Peptidoglycan - analysis peptidoglycans Phylogeny Quinones - analysis Republic of Korea ribosomal RNA RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA sequence homology sewage Sewage - microbiology sewage sludge sugars Systematics |
| title | Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant |
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