Fine mapping of Co, a gene controlling columnar growth habit located on apple (Malus×domestica Borkh.) linkage group 10
With 2 figures and 3 tables ABSTRACT: Tree architecture and shoot morphology are important factors in apple production systems. Because a columnar growth habit facilitates high‐density planting and labour‐saving fruit production methods, columnar apple breeding programmes are spreading worldwide. Co...
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| Veröffentlicht in: | Plant breeding 2012-10, Vol.131 (5), p.641-647 |
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| creator | Moriya, Shigeki Okada, Kazuma Haji, Takashi Yamamoto, Toshiya Abe, Kazuyuki |
| description | With 2 figures and 3 tables ABSTRACT: Tree architecture and shoot morphology are important factors in apple production systems. Because a columnar growth habit facilitates high‐density planting and labour‐saving fruit production methods, columnar apple breeding programmes are spreading worldwide. Columnar growth habit is controlled by a single dominant gene, Co, on linkage group 10. Fine mapping of Co was conducted using 1000 F1 progeny plants from 31 populations. Novel simple sequence‐repeat (SSR) markers were developed based on the genome sequence of apple ‘Golden Delicious’ and analysed for linkage to Co. Graphical genotyping of 22 progeny with recombination event in the vicinity of Co identified three SSR markers (Mdo.chr10.12, Mdo.chr10.13 and Mdo.chr10.14) that co‐segregated with Co. Mdo.chr10.12 and Mdo.chr10.14 are well suited for marker‐assisted selection because the sizes of the alleles linked to Co are different from those found in common ancestors of current apple breeding germplasm. The Co region was delimited to a 196‐kb region of the apple genome, between markers Mdo.chr10.11 and Mdo.chr10.15. |
| doi_str_mv | 10.1111/j.1439-0523.2012.01985.x |
| format | Article |
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Because a columnar growth habit facilitates high‐density planting and labour‐saving fruit production methods, columnar apple breeding programmes are spreading worldwide. Columnar growth habit is controlled by a single dominant gene, Co, on linkage group 10. Fine mapping of Co was conducted using 1000 F1 progeny plants from 31 populations. Novel simple sequence‐repeat (SSR) markers were developed based on the genome sequence of apple ‘Golden Delicious’ and analysed for linkage to Co. Graphical genotyping of 22 progeny with recombination event in the vicinity of Co identified three SSR markers (Mdo.chr10.12, Mdo.chr10.13 and Mdo.chr10.14) that co‐segregated with Co. Mdo.chr10.12 and Mdo.chr10.14 are well suited for marker‐assisted selection because the sizes of the alleles linked to Co are different from those found in common ancestors of current apple breeding germplasm. The Co region was delimited to a 196‐kb region of the apple genome, between markers Mdo.chr10.11 and Mdo.chr10.15.</description><identifier>ISSN: 0179-9541</identifier><identifier>EISSN: 1439-0523</identifier><identifier>DOI: 10.1111/j.1439-0523.2012.01985.x</identifier><identifier>CODEN: PLABED</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Agronomy. Soil science and plant productions ; alleles ; ancestry ; apple ; apple genome ; apples ; bin mapping ; Biological and medical sciences ; breeding ; Classical and quantitative genetics. Population genetics. Molecular genetics ; columnar growth habit ; crop production ; dominant genes ; fine mapping ; fruit growing ; Fruits ; Fundamental and applied biological sciences. Psychology ; Gene mapping ; Generalities. Genetics. Plant material ; Genetic resources, diversity ; Genetics ; Genetics and breeding of economic plants ; Genomes ; Genomics ; Genotyping ; Germplasm ; graphical genotype ; growth habit ; Malus ; marker-assisted selection ; microsatellite repeats ; Molecular genetics ; Nucleotide sequence ; Plant breeding ; Plant material ; Planting ; production technology ; Progeny ; Recombination ; Shoots ; simple sequence repeat ; Spreading ; Trees</subject><ispartof>Plant breeding, 2012-10, Vol.131 (5), p.641-647</ispartof><rights>2012 Blackwell Verlag GmbH</rights><rights>2015 INIST-CNRS</rights><rights>Copyright 2012 Blackwell Verlag GmbH</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5325-160ffc6088d58eede8f11496ea5d56b938e9c8809ec68f739f4d164f8a03f18b3</citedby><cites>FETCH-LOGICAL-c5325-160ffc6088d58eede8f11496ea5d56b938e9c8809ec68f739f4d164f8a03f18b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1439-0523.2012.01985.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1439-0523.2012.01985.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26555221$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Moriya, Shigeki</creatorcontrib><creatorcontrib>Okada, Kazuma</creatorcontrib><creatorcontrib>Haji, Takashi</creatorcontrib><creatorcontrib>Yamamoto, Toshiya</creatorcontrib><creatorcontrib>Abe, Kazuyuki</creatorcontrib><title>Fine mapping of Co, a gene controlling columnar growth habit located on apple (Malus×domestica Borkh.) linkage group 10</title><title>Plant breeding</title><description>With 2 figures and 3 tables ABSTRACT: Tree architecture and shoot morphology are important factors in apple production systems. Because a columnar growth habit facilitates high‐density planting and labour‐saving fruit production methods, columnar apple breeding programmes are spreading worldwide. Columnar growth habit is controlled by a single dominant gene, Co, on linkage group 10. Fine mapping of Co was conducted using 1000 F1 progeny plants from 31 populations. Novel simple sequence‐repeat (SSR) markers were developed based on the genome sequence of apple ‘Golden Delicious’ and analysed for linkage to Co. Graphical genotyping of 22 progeny with recombination event in the vicinity of Co identified three SSR markers (Mdo.chr10.12, Mdo.chr10.13 and Mdo.chr10.14) that co‐segregated with Co. Mdo.chr10.12 and Mdo.chr10.14 are well suited for marker‐assisted selection because the sizes of the alleles linked to Co are different from those found in common ancestors of current apple breeding germplasm. The Co region was delimited to a 196‐kb region of the apple genome, between markers Mdo.chr10.11 and Mdo.chr10.15.</description><subject>Agronomy. Soil science and plant productions</subject><subject>alleles</subject><subject>ancestry</subject><subject>apple</subject><subject>apple genome</subject><subject>apples</subject><subject>bin mapping</subject><subject>Biological and medical sciences</subject><subject>breeding</subject><subject>Classical and quantitative genetics. Population genetics. Molecular genetics</subject><subject>columnar growth habit</subject><subject>crop production</subject><subject>dominant genes</subject><subject>fine mapping</subject><subject>fruit growing</subject><subject>Fruits</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene mapping</subject><subject>Generalities. Genetics. Plant material</subject><subject>Genetic resources, diversity</subject><subject>Genetics</subject><subject>Genetics and breeding of economic plants</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Genotyping</subject><subject>Germplasm</subject><subject>graphical genotype</subject><subject>growth habit</subject><subject>Malus</subject><subject>marker-assisted selection</subject><subject>microsatellite repeats</subject><subject>Molecular genetics</subject><subject>Nucleotide sequence</subject><subject>Plant breeding</subject><subject>Plant material</subject><subject>Planting</subject><subject>production technology</subject><subject>Progeny</subject><subject>Recombination</subject><subject>Shoots</subject><subject>simple sequence repeat</subject><subject>Spreading</subject><subject>Trees</subject><issn>0179-9541</issn><issn>1439-0523</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNqNkctu1DAUhiMEEkPhGbCEkIpEgi-xYy9YdEa0IJWLKAXExvI49kxmnDjYiTp9Eh6IF8Mh1SxY4Y0v5_t__zonywCCBUrr1a5AJRE5pJgUGCJcQCQ4LQ73ssWxcD9bQFSJXNASPcwexbiD051Ui-xw3nQGtKrvm24DvAUr_xIosDHpVftuCN65qaK9G9tOBbAJ_mbYgq1aNwNwXqvB1MB3IDk4A07fKzfG379q35o4NFqBpQ_7bfECJJe92phJP_Yp_ePsgVUumid3-0l2ff7my-ptfvnx4t3q7DLXlGCaIwat1QxyXlNuTG24RagUzChaU7YWhBuhOYfCaMZtRYQta8RKyxUkFvE1OclOZ98--J9jCiXbJmrjnOqMH6NMPSQYMcZJQp_9g-78GLqUTiJCSoFZxctE8ZnSwccYjJV9aFoVbiWCkxuSOzl1Xk6dl9NI5N-RyEOSPr_7QEWtnA2q00086jGjlGKMEvd65m4aZ27_219-Wn6eTkmfz_omDuZw1Kuwl6wiFZXfPlzIr-wHRFd4Kb8n_unMW-Wl2oSU6foqOZcQQow5FuQPurW2ow</recordid><startdate>201210</startdate><enddate>201210</enddate><creator>Moriya, Shigeki</creator><creator>Okada, Kazuma</creator><creator>Haji, Takashi</creator><creator>Yamamoto, Toshiya</creator><creator>Abe, Kazuyuki</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Wiley Subscription Services, Inc</general><scope>FBQ</scope><scope>BSCLL</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>201210</creationdate><title>Fine mapping of Co, a gene controlling columnar growth habit located on apple (Malus×domestica Borkh.) linkage group 10</title><author>Moriya, Shigeki ; Okada, Kazuma ; Haji, Takashi ; Yamamoto, Toshiya ; Abe, Kazuyuki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5325-160ffc6088d58eede8f11496ea5d56b938e9c8809ec68f739f4d164f8a03f18b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Agronomy. Soil science and plant productions</topic><topic>alleles</topic><topic>ancestry</topic><topic>apple</topic><topic>apple genome</topic><topic>apples</topic><topic>bin mapping</topic><topic>Biological and medical sciences</topic><topic>breeding</topic><topic>Classical and quantitative genetics. Population genetics. Molecular genetics</topic><topic>columnar growth habit</topic><topic>crop production</topic><topic>dominant genes</topic><topic>fine mapping</topic><topic>fruit growing</topic><topic>Fruits</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene mapping</topic><topic>Generalities. Genetics. Plant material</topic><topic>Genetic resources, diversity</topic><topic>Genetics</topic><topic>Genetics and breeding of economic plants</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Genotyping</topic><topic>Germplasm</topic><topic>graphical genotype</topic><topic>growth habit</topic><topic>Malus</topic><topic>marker-assisted selection</topic><topic>microsatellite repeats</topic><topic>Molecular genetics</topic><topic>Nucleotide sequence</topic><topic>Plant breeding</topic><topic>Plant material</topic><topic>Planting</topic><topic>production technology</topic><topic>Progeny</topic><topic>Recombination</topic><topic>Shoots</topic><topic>simple sequence repeat</topic><topic>Spreading</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Moriya, Shigeki</creatorcontrib><creatorcontrib>Okada, Kazuma</creatorcontrib><creatorcontrib>Haji, Takashi</creatorcontrib><creatorcontrib>Yamamoto, Toshiya</creatorcontrib><creatorcontrib>Abe, Kazuyuki</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Plant breeding</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Moriya, Shigeki</au><au>Okada, Kazuma</au><au>Haji, Takashi</au><au>Yamamoto, Toshiya</au><au>Abe, Kazuyuki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fine mapping of Co, a gene controlling columnar growth habit located on apple (Malus×domestica Borkh.) linkage group 10</atitle><jtitle>Plant breeding</jtitle><date>2012-10</date><risdate>2012</risdate><volume>131</volume><issue>5</issue><spage>641</spage><epage>647</epage><pages>641-647</pages><issn>0179-9541</issn><eissn>1439-0523</eissn><coden>PLABED</coden><abstract>With 2 figures and 3 tables ABSTRACT: Tree architecture and shoot morphology are important factors in apple production systems. Because a columnar growth habit facilitates high‐density planting and labour‐saving fruit production methods, columnar apple breeding programmes are spreading worldwide. Columnar growth habit is controlled by a single dominant gene, Co, on linkage group 10. Fine mapping of Co was conducted using 1000 F1 progeny plants from 31 populations. Novel simple sequence‐repeat (SSR) markers were developed based on the genome sequence of apple ‘Golden Delicious’ and analysed for linkage to Co. Graphical genotyping of 22 progeny with recombination event in the vicinity of Co identified three SSR markers (Mdo.chr10.12, Mdo.chr10.13 and Mdo.chr10.14) that co‐segregated with Co. Mdo.chr10.12 and Mdo.chr10.14 are well suited for marker‐assisted selection because the sizes of the alleles linked to Co are different from those found in common ancestors of current apple breeding germplasm. The Co region was delimited to a 196‐kb region of the apple genome, between markers Mdo.chr10.11 and Mdo.chr10.15.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><doi>10.1111/j.1439-0523.2012.01985.x</doi><tpages>7</tpages></addata></record> |
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| ispartof | Plant breeding, 2012-10, Vol.131 (5), p.641-647 |
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| subjects | Agronomy. Soil science and plant productions alleles ancestry apple apple genome apples bin mapping Biological and medical sciences breeding Classical and quantitative genetics. Population genetics. Molecular genetics columnar growth habit crop production dominant genes fine mapping fruit growing Fruits Fundamental and applied biological sciences. Psychology Gene mapping Generalities. Genetics. Plant material Genetic resources, diversity Genetics Genetics and breeding of economic plants Genomes Genomics Genotyping Germplasm graphical genotype growth habit Malus marker-assisted selection microsatellite repeats Molecular genetics Nucleotide sequence Plant breeding Plant material Planting production technology Progeny Recombination Shoots simple sequence repeat Spreading Trees |
| title | Fine mapping of Co, a gene controlling columnar growth habit located on apple (Malus×domestica Borkh.) linkage group 10 |
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