Gene expression indicates a zone of heterocyst differentiation within the thallus of the cyanolichen Pseudocyphellaria crocata
Development of the symbiotic association in the bipartite lichen Pseudocyphellaria crocata was investigated by characterizing two regions of the thallus. Thallus organization was examined using microscopy. A HIP1-based differential display technique was modified for use on Nostoc strains, including...
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creator | Chua, Jocelyn P. S. Wallace, Emma J. S. Yardley, Jessica A. Duncan, Elizabeth J. Dearden, Peter K. Summerfield, Tina C. |
description | Development of the symbiotic association in the bipartite lichen Pseudocyphellaria crocata was investigated by characterizing two regions of the thallus.
Thallus organization was examined using microscopy. A HIP1-based differential display technique was modified for use on Nostoc strains, including lichenized strains. Northern hybridization and quantitative real-time polymerase chain reaction were used to confirm differential display results, and determine expression levels of key cyanobacterial genes. Photosystem II yield across the thallus was measured using pulse-amplitude modulated fluorescence.
Microscopy revealed structural differences in the thallus margins compared with the centre and identified putative heterocysts in both regions. Differential display identified altered transcript levels in both Nostoc punctiforme and a lichenized Nostoc strain. Transcript abundance of cox2, atpA, and ribA was increased in the thallus margin compared with the centre. Expression of cox2 is heterocyst specific and expression of other heterocyst-specific genes (hetR and nifK) was elevated in the margin, whereas, expression of psbB and PSII yield were not.
Structural organization of the thallus margin differed from the centre. Both regions contained putative heterocysts but gene expression data indicated increased heterocyst differentiation in the margins where photosystem II yield was decreased. This is consistent with a zone of heterocyst differentiation within the thallus margin. |
doi_str_mv | 10.1111/j.1469-8137.2012.04272.x |
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Thallus organization was examined using microscopy. A HIP1-based differential display technique was modified for use on Nostoc strains, including lichenized strains. Northern hybridization and quantitative real-time polymerase chain reaction were used to confirm differential display results, and determine expression levels of key cyanobacterial genes. Photosystem II yield across the thallus was measured using pulse-amplitude modulated fluorescence.
Microscopy revealed structural differences in the thallus margins compared with the centre and identified putative heterocysts in both regions. Differential display identified altered transcript levels in both Nostoc punctiforme and a lichenized Nostoc strain. Transcript abundance of cox2, atpA, and ribA was increased in the thallus margin compared with the centre. Expression of cox2 is heterocyst specific and expression of other heterocyst-specific genes (hetR and nifK) was elevated in the margin, whereas, expression of psbB and PSII yield were not.
Structural organization of the thallus margin differed from the centre. Both regions contained putative heterocysts but gene expression data indicated increased heterocyst differentiation in the margins where photosystem II yield was decreased. This is consistent with a zone of heterocyst differentiation within the thallus margin.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/j.1469-8137.2012.04272.x</identifier><identifier>PMID: 22931432</identifier><language>eng</language><publisher>England: New Phytologist Trust</publisher><subject>Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Blotting, Northern ; Cyanobacteria ; Cyclooxygenase-2 ; cytochrome c oxidase ; Developmental biology ; Differential display ; Differentiation ; Electron Transport Complex IV - genetics ; Electron Transport Complex IV - metabolism ; Fluorescence ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Bacterial ; Genes ; Genes, Bacterial ; heterocyst differentiation ; Heterocysts ; Hybridization ; Identification ; lichen ; Lichens ; Lichens - cytology ; Lichens - genetics ; Lichens - metabolism ; Lichens - microbiology ; Microscopy ; Microscopy, Confocal ; Nitrogen ; Nitrogen Fixation ; Nostoc ; Nostoc - cytology ; Nostoc - genetics ; Nostoc - metabolism ; Nucleotide sequence ; PCR ; Photosystem II ; Photosystem II Protein Complex - genetics ; Photosystem II Protein Complex - metabolism ; Phycobilins - metabolism ; Polymerase chain reaction ; Pseudocyphellaria crocata ; Regions ; Reverse Transcriptase Polymerase Chain Reaction ; RNA ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; Symbionts ; Symbiosis ; Thallus ; Transcription</subject><ispartof>The New phytologist, 2012-11, Vol.196 (3), p.862-872</ispartof><rights>2012 New Phytologist Trust</rights><rights>2012 The Authors. New Phytologist © 2012 New Phytologist Trust</rights><rights>2012 The Authors. New Phytologist © 2012 New Phytologist Trust.</rights><rights>Copyright © 2012 New Phytologist Trust</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5132-7adf81c35baea944499f603cf7a09e8604fb36f9ff0791ab9854bb90b5debfb53</citedby><cites>FETCH-LOGICAL-c5132-7adf81c35baea944499f603cf7a09e8604fb36f9ff0791ab9854bb90b5debfb53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/newphytologist.196.3.862$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/newphytologist.196.3.862$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,777,781,800,1412,1428,27905,27906,45555,45556,46390,46814,57998,58231</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22931432$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chua, Jocelyn P. S.</creatorcontrib><creatorcontrib>Wallace, Emma J. S.</creatorcontrib><creatorcontrib>Yardley, Jessica A.</creatorcontrib><creatorcontrib>Duncan, Elizabeth J.</creatorcontrib><creatorcontrib>Dearden, Peter K.</creatorcontrib><creatorcontrib>Summerfield, Tina C.</creatorcontrib><title>Gene expression indicates a zone of heterocyst differentiation within the thallus of the cyanolichen Pseudocyphellaria crocata</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>Development of the symbiotic association in the bipartite lichen Pseudocyphellaria crocata was investigated by characterizing two regions of the thallus.
Thallus organization was examined using microscopy. A HIP1-based differential display technique was modified for use on Nostoc strains, including lichenized strains. Northern hybridization and quantitative real-time polymerase chain reaction were used to confirm differential display results, and determine expression levels of key cyanobacterial genes. Photosystem II yield across the thallus was measured using pulse-amplitude modulated fluorescence.
Microscopy revealed structural differences in the thallus margins compared with the centre and identified putative heterocysts in both regions. Differential display identified altered transcript levels in both Nostoc punctiforme and a lichenized Nostoc strain. Transcript abundance of cox2, atpA, and ribA was increased in the thallus margin compared with the centre. Expression of cox2 is heterocyst specific and expression of other heterocyst-specific genes (hetR and nifK) was elevated in the margin, whereas, expression of psbB and PSII yield were not.
Structural organization of the thallus margin differed from the centre. Both regions contained putative heterocysts but gene expression data indicated increased heterocyst differentiation in the margins where photosystem II yield was decreased. This is consistent with a zone of heterocyst differentiation within the thallus margin.</description><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Blotting, Northern</subject><subject>Cyanobacteria</subject><subject>Cyclooxygenase-2</subject><subject>cytochrome c oxidase</subject><subject>Developmental biology</subject><subject>Differential display</subject><subject>Differentiation</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Electron Transport Complex IV - metabolism</subject><subject>Fluorescence</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Bacterial</subject><subject>Genes</subject><subject>Genes, Bacterial</subject><subject>heterocyst differentiation</subject><subject>Heterocysts</subject><subject>Hybridization</subject><subject>Identification</subject><subject>lichen</subject><subject>Lichens</subject><subject>Lichens - cytology</subject><subject>Lichens - genetics</subject><subject>Lichens - metabolism</subject><subject>Lichens - microbiology</subject><subject>Microscopy</subject><subject>Microscopy, Confocal</subject><subject>Nitrogen</subject><subject>Nitrogen Fixation</subject><subject>Nostoc</subject><subject>Nostoc - cytology</subject><subject>Nostoc - genetics</subject><subject>Nostoc - metabolism</subject><subject>Nucleotide sequence</subject><subject>PCR</subject><subject>Photosystem II</subject><subject>Photosystem II Protein Complex - genetics</subject><subject>Photosystem II Protein Complex - metabolism</subject><subject>Phycobilins - metabolism</subject><subject>Polymerase chain reaction</subject><subject>Pseudocyphellaria crocata</subject><subject>Regions</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>RNA</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>Symbionts</subject><subject>Symbiosis</subject><subject>Thallus</subject><subject>Transcription</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1v1DAQhi0EokvhL6BIXLgk-CsfPnBAVWmRKugBJG6Wk4yJo2wcbEe74cBvx2bLHjggLFm2Nc87M54XoYzggsT1ZiwIr0TeEFYXFBNaYE5rWhwfod058BjtMKZNXvHq6wV65v2IMRZlRZ-iC0oFI5zRHfp5AzNkcFwceG_snJm5N50K4DOV_bAxZnU2QABnu82HrDdag4M5GBUSfjBhMHMWBohbTdPqkyA9u03NdjLdAHN272HtY4JlgGlSzqisi_lUUM_RE60mDy8ezkv05f3156vb_O7TzYerd3d5VxJG81r1uiEdK1sFSnDOhdAVZp2uFRbQVJjrllVaaI1rQVQrmpK3rcBt2UOr25JdotenvIuz31fwQe6N71IzM9jVS5Imw3iJaURf_YWOdnVz7E7S1EwtGCb_otJgGakFZpFqTlT8rvcOtFyc2Su3xYIyOSlHmQyTyTCZnJS_nZTHKH35UGBt99CfhX-si8DbE3AwE2z_nVh-vL9Nt6jPT_rRB-vO-hkOy7AFO9lvJv6KiEoy2VSU_QJsqL7Y</recordid><startdate>20121101</startdate><enddate>20121101</enddate><creator>Chua, Jocelyn P. S.</creator><creator>Wallace, Emma J. S.</creator><creator>Yardley, Jessica A.</creator><creator>Duncan, Elizabeth J.</creator><creator>Dearden, Peter K.</creator><creator>Summerfield, Tina C.</creator><general>New Phytologist Trust</general><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20121101</creationdate><title>Gene expression indicates a zone of heterocyst differentiation within the thallus of the cyanolichen Pseudocyphellaria crocata</title><author>Chua, Jocelyn P. S. ; Wallace, Emma J. S. ; Yardley, Jessica A. ; Duncan, Elizabeth J. ; Dearden, Peter K. ; Summerfield, Tina C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5132-7adf81c35baea944499f603cf7a09e8604fb36f9ff0791ab9854bb90b5debfb53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Blotting, Northern</topic><topic>Cyanobacteria</topic><topic>Cyclooxygenase-2</topic><topic>cytochrome c oxidase</topic><topic>Developmental biology</topic><topic>Differential display</topic><topic>Differentiation</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Electron Transport Complex IV - metabolism</topic><topic>Fluorescence</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Bacterial</topic><topic>Genes</topic><topic>Genes, Bacterial</topic><topic>heterocyst differentiation</topic><topic>Heterocysts</topic><topic>Hybridization</topic><topic>Identification</topic><topic>lichen</topic><topic>Lichens</topic><topic>Lichens - cytology</topic><topic>Lichens - genetics</topic><topic>Lichens - metabolism</topic><topic>Lichens - microbiology</topic><topic>Microscopy</topic><topic>Microscopy, Confocal</topic><topic>Nitrogen</topic><topic>Nitrogen Fixation</topic><topic>Nostoc</topic><topic>Nostoc - cytology</topic><topic>Nostoc - genetics</topic><topic>Nostoc - metabolism</topic><topic>Nucleotide sequence</topic><topic>PCR</topic><topic>Photosystem II</topic><topic>Photosystem II Protein Complex - genetics</topic><topic>Photosystem II Protein Complex - metabolism</topic><topic>Phycobilins - metabolism</topic><topic>Polymerase chain reaction</topic><topic>Pseudocyphellaria crocata</topic><topic>Regions</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>RNA</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><topic>Symbionts</topic><topic>Symbiosis</topic><topic>Thallus</topic><topic>Transcription</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chua, Jocelyn P. S.</creatorcontrib><creatorcontrib>Wallace, Emma J. S.</creatorcontrib><creatorcontrib>Yardley, Jessica A.</creatorcontrib><creatorcontrib>Duncan, Elizabeth J.</creatorcontrib><creatorcontrib>Dearden, Peter K.</creatorcontrib><creatorcontrib>Summerfield, Tina C.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chua, Jocelyn P. S.</au><au>Wallace, Emma J. S.</au><au>Yardley, Jessica A.</au><au>Duncan, Elizabeth J.</au><au>Dearden, Peter K.</au><au>Summerfield, Tina C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene expression indicates a zone of heterocyst differentiation within the thallus of the cyanolichen Pseudocyphellaria crocata</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2012-11-01</date><risdate>2012</risdate><volume>196</volume><issue>3</issue><spage>862</spage><epage>872</epage><pages>862-872</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>Development of the symbiotic association in the bipartite lichen Pseudocyphellaria crocata was investigated by characterizing two regions of the thallus.
Thallus organization was examined using microscopy. A HIP1-based differential display technique was modified for use on Nostoc strains, including lichenized strains. Northern hybridization and quantitative real-time polymerase chain reaction were used to confirm differential display results, and determine expression levels of key cyanobacterial genes. Photosystem II yield across the thallus was measured using pulse-amplitude modulated fluorescence.
Microscopy revealed structural differences in the thallus margins compared with the centre and identified putative heterocysts in both regions. Differential display identified altered transcript levels in both Nostoc punctiforme and a lichenized Nostoc strain. Transcript abundance of cox2, atpA, and ribA was increased in the thallus margin compared with the centre. Expression of cox2 is heterocyst specific and expression of other heterocyst-specific genes (hetR and nifK) was elevated in the margin, whereas, expression of psbB and PSII yield were not.
Structural organization of the thallus margin differed from the centre. Both regions contained putative heterocysts but gene expression data indicated increased heterocyst differentiation in the margins where photosystem II yield was decreased. This is consistent with a zone of heterocyst differentiation within the thallus margin.</abstract><cop>England</cop><pub>New Phytologist Trust</pub><pmid>22931432</pmid><doi>10.1111/j.1469-8137.2012.04272.x</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Bacterial Proteins - genetics Bacterial Proteins - metabolism Blotting, Northern Cyanobacteria Cyclooxygenase-2 cytochrome c oxidase Developmental biology Differential display Differentiation Electron Transport Complex IV - genetics Electron Transport Complex IV - metabolism Fluorescence Gene expression Gene Expression Profiling Gene Expression Regulation, Bacterial Genes Genes, Bacterial heterocyst differentiation Heterocysts Hybridization Identification lichen Lichens Lichens - cytology Lichens - genetics Lichens - metabolism Lichens - microbiology Microscopy Microscopy, Confocal Nitrogen Nitrogen Fixation Nostoc Nostoc - cytology Nostoc - genetics Nostoc - metabolism Nucleotide sequence PCR Photosystem II Photosystem II Protein Complex - genetics Photosystem II Protein Complex - metabolism Phycobilins - metabolism Polymerase chain reaction Pseudocyphellaria crocata Regions Reverse Transcriptase Polymerase Chain Reaction RNA RNA, Messenger - genetics RNA, Messenger - metabolism Symbionts Symbiosis Thallus Transcription |
title | Gene expression indicates a zone of heterocyst differentiation within the thallus of the cyanolichen Pseudocyphellaria crocata |
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