Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective
[Display omitted] ► An extended COI and rDNA phylogeny of the scleractinian Robust clade is presented. ► Indian Ocean taxa and populations are analyzed for the first time. ► The genus Parasimplastrea, not related to the Bigmessidae, is closest to Blastomussa. ► Plasticity of the unresolved Favites a...
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► An extended COI and rDNA phylogeny of the scleractinian Robust clade is presented. ► Indian Ocean taxa and populations are analyzed for the first time. ► The genus Parasimplastrea, not related to the Bigmessidae, is closest to Blastomussa. ► Plasticity of the unresolved Favites and Favia is shown at species and clade level. ► Intraspecific divergences between Indian and Pacific Ocean populations are detected.
Recent phylogenetic analyses have demonstrated the limits of traditional coral taxonomy based solely on skeletal morphology. In this phylogenetic context, Faviidae and Mussidae are ecologically dominant families comprising one third of scleractinian reef coral genera, but their phylogenies remain partially unresolved. Many of their taxa are scattered throughout most of the clades of the Robust group, and major systematic incongruences exist. Numerous genera and species remain unstudied, and the entire biogeographic area of the Indian Ocean remains largely unsampled. In this study, we analyzed a portion of the mitochondrial cytochrome c oxidase subunit 1 gene and a portion of ribosomal DNA for 14 genera and 27 species of the Faviidae and Mussidae collected from the Indian Ocean and New Caledonia and this is the first analysis of five of these species. For some taxa, newly discovered evolutionary relationships were detected, such as the evolutionary distinctiveness of Acanthastrea maxima, the genetic overlap of Parasimplastrea omanensis and Blastomussa merleti, and the peculiar position of Favites peresi in clade XVII together with Echinopora and Montastraea salebrosa. Moreover, numerous cases of intraspecific divergences between Indian Ocean and Pacific Ocean populations were detected. The most striking cases involve the genera Favites and Favia, and in particular Favites complanata, F. halicora, Favia favus, F. pallida, F. matthaii, and F. rotumana, but divergence also is evident in Blastomussa merleti, Cyphastrea serailia, and Echinopora gemmacea. High morphological variability characterizes most of these taxa, thus traditional skeletal characteristics, such as corallite arrangement, seem to be evolutionary misleading and are plagued by convergence. Our results indicate that the systematics of the Faviidae and the Mussidae is far from being resolved and that the inclusion of conspecific populations of different geographical origin represents an unavoidable step when redescribing the taxonomy and systematics of scleractinian corals |
doi_str_mv | 10.1016/j.ympev.2012.06.001 |
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► An extended COI and rDNA phylogeny of the scleractinian Robust clade is presented. ► Indian Ocean taxa and populations are analyzed for the first time. ► The genus Parasimplastrea, not related to the Bigmessidae, is closest to Blastomussa. ► Plasticity of the unresolved Favites and Favia is shown at species and clade level. ► Intraspecific divergences between Indian and Pacific Ocean populations are detected.
Recent phylogenetic analyses have demonstrated the limits of traditional coral taxonomy based solely on skeletal morphology. In this phylogenetic context, Faviidae and Mussidae are ecologically dominant families comprising one third of scleractinian reef coral genera, but their phylogenies remain partially unresolved. Many of their taxa are scattered throughout most of the clades of the Robust group, and major systematic incongruences exist. Numerous genera and species remain unstudied, and the entire biogeographic area of the Indian Ocean remains largely unsampled. In this study, we analyzed a portion of the mitochondrial cytochrome c oxidase subunit 1 gene and a portion of ribosomal DNA for 14 genera and 27 species of the Faviidae and Mussidae collected from the Indian Ocean and New Caledonia and this is the first analysis of five of these species. For some taxa, newly discovered evolutionary relationships were detected, such as the evolutionary distinctiveness of Acanthastrea maxima, the genetic overlap of Parasimplastrea omanensis and Blastomussa merleti, and the peculiar position of Favites peresi in clade XVII together with Echinopora and Montastraea salebrosa. Moreover, numerous cases of intraspecific divergences between Indian Ocean and Pacific Ocean populations were detected. The most striking cases involve the genera Favites and Favia, and in particular Favites complanata, F. halicora, Favia favus, F. pallida, F. matthaii, and F. rotumana, but divergence also is evident in Blastomussa merleti, Cyphastrea serailia, and Echinopora gemmacea. High morphological variability characterizes most of these taxa, thus traditional skeletal characteristics, such as corallite arrangement, seem to be evolutionary misleading and are plagued by convergence. Our results indicate that the systematics of the Faviidae and the Mussidae is far from being resolved and that the inclusion of conspecific populations of different geographical origin represents an unavoidable step when redescribing the taxonomy and systematics of scleractinian corals. More molecular phylogenies are needed to define the evolutionary lineages that could be corroborated by known and newly discovered micromorphological characters.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2012.06.001</identifier><identifier>PMID: 22705823</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Acanthastrea ; Animals ; Anthozoa - anatomy & histology ; Anthozoa - classification ; Anthozoa - genetics ; Biological Evolution ; Blastomussa merleti ; COI ; coral reefs ; corals ; Cyphastrea serailia ; cytochrome-c oxidase ; DNA, Mitochondrial - genetics ; DNA, Ribosomal - genetics ; Echinopora ; Echinopora gemmacea ; Evolution ; Favia ; Favia favus ; Faviidae ; Favites ; Favites complanata ; genes ; Indian Ocean ; Merulinidae ; Montastraea ; Mussidae ; Pacific Ocean ; Pectiniidae ; Phylogeny ; provenance ; rDNA ; ribosomal DNA ; Scleractinia ; Sequence Analysis, DNA ; taxonomy</subject><ispartof>Molecular phylogenetics and evolution, 2012-10, Vol.65 (1), p.183-193</ispartof><rights>2012 Elsevier Inc.</rights><rights>Copyright © 2012 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c482t-67da1992da15f08ff08d85e7b993bfabf413cf16c5bd49a9d5c88b4d84c37cd3</citedby><cites>FETCH-LOGICAL-c482t-67da1992da15f08ff08d85e7b993bfabf413cf16c5bd49a9d5c88b4d84c37cd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ympev.2012.06.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3548,27922,27923,45993</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22705823$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Arrigoni, Roberto</creatorcontrib><creatorcontrib>Stefani, Fabrizio</creatorcontrib><creatorcontrib>Pichon, Michel</creatorcontrib><creatorcontrib>Galli, Paolo</creatorcontrib><creatorcontrib>Benzoni, Francesca</creatorcontrib><title>Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>[Display omitted]
► An extended COI and rDNA phylogeny of the scleractinian Robust clade is presented. ► Indian Ocean taxa and populations are analyzed for the first time. ► The genus Parasimplastrea, not related to the Bigmessidae, is closest to Blastomussa. ► Plasticity of the unresolved Favites and Favia is shown at species and clade level. ► Intraspecific divergences between Indian and Pacific Ocean populations are detected.
Recent phylogenetic analyses have demonstrated the limits of traditional coral taxonomy based solely on skeletal morphology. In this phylogenetic context, Faviidae and Mussidae are ecologically dominant families comprising one third of scleractinian reef coral genera, but their phylogenies remain partially unresolved. Many of their taxa are scattered throughout most of the clades of the Robust group, and major systematic incongruences exist. Numerous genera and species remain unstudied, and the entire biogeographic area of the Indian Ocean remains largely unsampled. In this study, we analyzed a portion of the mitochondrial cytochrome c oxidase subunit 1 gene and a portion of ribosomal DNA for 14 genera and 27 species of the Faviidae and Mussidae collected from the Indian Ocean and New Caledonia and this is the first analysis of five of these species. For some taxa, newly discovered evolutionary relationships were detected, such as the evolutionary distinctiveness of Acanthastrea maxima, the genetic overlap of Parasimplastrea omanensis and Blastomussa merleti, and the peculiar position of Favites peresi in clade XVII together with Echinopora and Montastraea salebrosa. Moreover, numerous cases of intraspecific divergences between Indian Ocean and Pacific Ocean populations were detected. The most striking cases involve the genera Favites and Favia, and in particular Favites complanata, F. halicora, Favia favus, F. pallida, F. matthaii, and F. rotumana, but divergence also is evident in Blastomussa merleti, Cyphastrea serailia, and Echinopora gemmacea. High morphological variability characterizes most of these taxa, thus traditional skeletal characteristics, such as corallite arrangement, seem to be evolutionary misleading and are plagued by convergence. Our results indicate that the systematics of the Faviidae and the Mussidae is far from being resolved and that the inclusion of conspecific populations of different geographical origin represents an unavoidable step when redescribing the taxonomy and systematics of scleractinian corals. More molecular phylogenies are needed to define the evolutionary lineages that could be corroborated by known and newly discovered micromorphological characters.</description><subject>Acanthastrea</subject><subject>Animals</subject><subject>Anthozoa - anatomy & histology</subject><subject>Anthozoa - classification</subject><subject>Anthozoa - genetics</subject><subject>Biological Evolution</subject><subject>Blastomussa merleti</subject><subject>COI</subject><subject>coral reefs</subject><subject>corals</subject><subject>Cyphastrea serailia</subject><subject>cytochrome-c oxidase</subject><subject>DNA, Mitochondrial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Echinopora</subject><subject>Echinopora gemmacea</subject><subject>Evolution</subject><subject>Favia</subject><subject>Favia favus</subject><subject>Faviidae</subject><subject>Favites</subject><subject>Favites complanata</subject><subject>genes</subject><subject>Indian Ocean</subject><subject>Merulinidae</subject><subject>Montastraea</subject><subject>Mussidae</subject><subject>Pacific Ocean</subject><subject>Pectiniidae</subject><subject>Phylogeny</subject><subject>provenance</subject><subject>rDNA</subject><subject>ribosomal DNA</subject><subject>Scleractinia</subject><subject>Sequence Analysis, DNA</subject><subject>taxonomy</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1v1DAQhi0EoqXwC5DAxyKR4I84sZE4VFULlVoVQTlbjj1pvcrGwU4W7b-vQxaOiIPHM9YzM9b7IvSakpISWn_YlPvtCLuSEcpKUpeE0CfomBIlCiUof7rkQhSNIvwIvUhpkwEqlHiOjhhriJCMH6NfN6EHO_cm4vFh34d7GPY4dHh6APwttHOasO2NA3x6aXbeOwPv8c2c0iGDOPd-WAszOPwV7JTr5eHdR3w24KvBeTPgWws5jhDTuBA7eImedaZP8Opwn6C7y4u78y_F9e3nq_Oz68JWkk1F3ThDlWI5io7ILh8nBTStUrztTNtVlNuO1la0rlJGOWGlbCsnK8sb6_gJOl3HjjH8nCFNeuuThb43A4Q5aUokY4xXpPoPlLOG15KIjPIVtTGkFKHTY_RbE_cZ0os3eqN_e6MXbzSpdZY-d705LJjbLbi_PX_MyMDbFehM0OY--qR_fM8TBCGkYpKoTHxaCciS7TxEnayHwYLzMeuqXfD__MIjOSGqbQ</recordid><startdate>20121001</startdate><enddate>20121001</enddate><creator>Arrigoni, Roberto</creator><creator>Stefani, Fabrizio</creator><creator>Pichon, Michel</creator><creator>Galli, Paolo</creator><creator>Benzoni, Francesca</creator><general>Elsevier Inc</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20121001</creationdate><title>Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective</title><author>Arrigoni, Roberto ; Stefani, Fabrizio ; Pichon, Michel ; Galli, Paolo ; Benzoni, Francesca</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c482t-67da1992da15f08ff08d85e7b993bfabf413cf16c5bd49a9d5c88b4d84c37cd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Acanthastrea</topic><topic>Animals</topic><topic>Anthozoa - anatomy & histology</topic><topic>Anthozoa - classification</topic><topic>Anthozoa - genetics</topic><topic>Biological Evolution</topic><topic>Blastomussa merleti</topic><topic>COI</topic><topic>coral reefs</topic><topic>corals</topic><topic>Cyphastrea serailia</topic><topic>cytochrome-c oxidase</topic><topic>DNA, Mitochondrial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Echinopora</topic><topic>Echinopora gemmacea</topic><topic>Evolution</topic><topic>Favia</topic><topic>Favia favus</topic><topic>Faviidae</topic><topic>Favites</topic><topic>Favites complanata</topic><topic>genes</topic><topic>Indian Ocean</topic><topic>Merulinidae</topic><topic>Montastraea</topic><topic>Mussidae</topic><topic>Pacific Ocean</topic><topic>Pectiniidae</topic><topic>Phylogeny</topic><topic>provenance</topic><topic>rDNA</topic><topic>ribosomal DNA</topic><topic>Scleractinia</topic><topic>Sequence Analysis, DNA</topic><topic>taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Arrigoni, Roberto</creatorcontrib><creatorcontrib>Stefani, Fabrizio</creatorcontrib><creatorcontrib>Pichon, Michel</creatorcontrib><creatorcontrib>Galli, Paolo</creatorcontrib><creatorcontrib>Benzoni, Francesca</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arrigoni, Roberto</au><au>Stefani, Fabrizio</au><au>Pichon, Michel</au><au>Galli, Paolo</au><au>Benzoni, Francesca</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2012-10-01</date><risdate>2012</risdate><volume>65</volume><issue>1</issue><spage>183</spage><epage>193</epage><pages>183-193</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>[Display omitted]
► An extended COI and rDNA phylogeny of the scleractinian Robust clade is presented. ► Indian Ocean taxa and populations are analyzed for the first time. ► The genus Parasimplastrea, not related to the Bigmessidae, is closest to Blastomussa. ► Plasticity of the unresolved Favites and Favia is shown at species and clade level. ► Intraspecific divergences between Indian and Pacific Ocean populations are detected.
Recent phylogenetic analyses have demonstrated the limits of traditional coral taxonomy based solely on skeletal morphology. In this phylogenetic context, Faviidae and Mussidae are ecologically dominant families comprising one third of scleractinian reef coral genera, but their phylogenies remain partially unresolved. Many of their taxa are scattered throughout most of the clades of the Robust group, and major systematic incongruences exist. Numerous genera and species remain unstudied, and the entire biogeographic area of the Indian Ocean remains largely unsampled. In this study, we analyzed a portion of the mitochondrial cytochrome c oxidase subunit 1 gene and a portion of ribosomal DNA for 14 genera and 27 species of the Faviidae and Mussidae collected from the Indian Ocean and New Caledonia and this is the first analysis of five of these species. For some taxa, newly discovered evolutionary relationships were detected, such as the evolutionary distinctiveness of Acanthastrea maxima, the genetic overlap of Parasimplastrea omanensis and Blastomussa merleti, and the peculiar position of Favites peresi in clade XVII together with Echinopora and Montastraea salebrosa. Moreover, numerous cases of intraspecific divergences between Indian Ocean and Pacific Ocean populations were detected. The most striking cases involve the genera Favites and Favia, and in particular Favites complanata, F. halicora, Favia favus, F. pallida, F. matthaii, and F. rotumana, but divergence also is evident in Blastomussa merleti, Cyphastrea serailia, and Echinopora gemmacea. High morphological variability characterizes most of these taxa, thus traditional skeletal characteristics, such as corallite arrangement, seem to be evolutionary misleading and are plagued by convergence. Our results indicate that the systematics of the Faviidae and the Mussidae is far from being resolved and that the inclusion of conspecific populations of different geographical origin represents an unavoidable step when redescribing the taxonomy and systematics of scleractinian corals. More molecular phylogenies are needed to define the evolutionary lineages that could be corroborated by known and newly discovered micromorphological characters.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>22705823</pmid><doi>10.1016/j.ympev.2012.06.001</doi><tpages>11</tpages></addata></record> |
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subjects | Acanthastrea Animals Anthozoa - anatomy & histology Anthozoa - classification Anthozoa - genetics Biological Evolution Blastomussa merleti COI coral reefs corals Cyphastrea serailia cytochrome-c oxidase DNA, Mitochondrial - genetics DNA, Ribosomal - genetics Echinopora Echinopora gemmacea Evolution Favia Favia favus Faviidae Favites Favites complanata genes Indian Ocean Merulinidae Montastraea Mussidae Pacific Ocean Pectiniidae Phylogeny provenance rDNA ribosomal DNA Scleractinia Sequence Analysis, DNA taxonomy |
title | Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective |
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