High-Performance Liquid Chromatography Under Partially Denaturing Conditions (dHPLC) is a Fast and Cost-Effective Method for Screening Molecular Defects: Four Novel Mutations Found in X-Linked Chronic Granulomatous Disease

Implementing precise techniques in routine diagnosis of chronic granulomatous disease (CGD), which expedite the screening of molecular defects, may be critical for a quick assumption of patient prognosis. This study compared the efficacy of single‐strand conformation polymorphism analysis (SSCP) and...

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Veröffentlicht in:Scandinavian journal of immunology 2012-08, Vol.76 (2), p.158-166
Hauptverfasser: de Oliveira-Junior, E. B., Prando, C., Lopez, J. A., Arango, J. C., Buzolin, M., Rehder, J., Pedroza, L. A., Frazão, J. B., Dantas, V. M., Roxo-Junior, P., Grumach, A. S., Costa-Carvalho, B. T., Bustamante, J., Condino-Neto, A.
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container_issue 2
container_start_page 158
container_title Scandinavian journal of immunology
container_volume 76
creator de Oliveira-Junior, E. B.
Prando, C.
Lopez, J. A.
Arango, J. C.
Buzolin, M.
Rehder, J.
Pedroza, L. A.
Frazão, J. B.
Dantas, V. M.
Roxo-Junior, P.
Grumach, A. S.
Costa-Carvalho, B. T.
Bustamante, J.
Condino-Neto, A.
description Implementing precise techniques in routine diagnosis of chronic granulomatous disease (CGD), which expedite the screening of molecular defects, may be critical for a quick assumption of patient prognosis. This study compared the efficacy of single‐strand conformation polymorphism analysis (SSCP) and high‐performance liquid chromatography under partially denaturing conditions (dHPLC) for screening mutations in CGD patients. We selected 10 male CGD patients with a clinical history of severe recurrent infections and abnormal respiratory burst function. gDNA, mRNA and cDNA samples were prepared by standard methods. CYBB exons were amplified by PCR and screened by SSCP or dHPLC. Abnormal DNA fragments were sequenced to reveal the nature of the mutations. The SSCP and dHPLC methods showed DNA abnormalities, respectively, in 55% and 100% of the cases. Sequencing of the abnormal DNA samples confirmed mutations in all cases. Four novel mutations in CYBB were identified which were picked up only by the dHPLC screening (c.904 insC, c.141+5 g>t, c.553 T>C, and c.665 A>T). This work highlights the relevance of dHPLC, a sensitive, fast, reliable and cost‐effective method for screening mutations in CGD, which in combination with functional assays assessing the phagocyte respiratory burst will contribute to expedite the definitive diagnosis of X‐linked CGD, direct treatment, genetic counselling and to have a clear assumption of the prognosis. This strategy is especially suitable for developing countries.
doi_str_mv 10.1111/j.1365-3083.2012.02714.x
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B. ; Prando, C. ; Lopez, J. A. ; Arango, J. C. ; Buzolin, M. ; Rehder, J. ; Pedroza, L. A. ; Frazão, J. B. ; Dantas, V. M. ; Roxo-Junior, P. ; Grumach, A. S. ; Costa-Carvalho, B. T. ; Bustamante, J. ; Condino-Neto, A.</creator><creatorcontrib>de Oliveira-Junior, E. B. ; Prando, C. ; Lopez, J. A. ; Arango, J. C. ; Buzolin, M. ; Rehder, J. ; Pedroza, L. A. ; Frazão, J. B. ; Dantas, V. M. ; Roxo-Junior, P. ; Grumach, A. S. ; Costa-Carvalho, B. T. ; Bustamante, J. ; Condino-Neto, A.</creatorcontrib><description>Implementing precise techniques in routine diagnosis of chronic granulomatous disease (CGD), which expedite the screening of molecular defects, may be critical for a quick assumption of patient prognosis. This study compared the efficacy of single‐strand conformation polymorphism analysis (SSCP) and high‐performance liquid chromatography under partially denaturing conditions (dHPLC) for screening mutations in CGD patients. We selected 10 male CGD patients with a clinical history of severe recurrent infections and abnormal respiratory burst function. gDNA, mRNA and cDNA samples were prepared by standard methods. CYBB exons were amplified by PCR and screened by SSCP or dHPLC. Abnormal DNA fragments were sequenced to reveal the nature of the mutations. The SSCP and dHPLC methods showed DNA abnormalities, respectively, in 55% and 100% of the cases. Sequencing of the abnormal DNA samples confirmed mutations in all cases. Four novel mutations in CYBB were identified which were picked up only by the dHPLC screening (c.904 insC, c.141+5 g&gt;t, c.553 T&gt;C, and c.665 A&gt;T). 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subjects Amino Acid Sequence
Base Sequence
Child, Preschool
Chromatography, High Pressure Liquid - economics
Chromatography, High Pressure Liquid - methods
Cost-Benefit Analysis
Granulomatous Disease, Chronic - genetics
Humans
Infant
Infant, Newborn
Male
Membrane Glycoproteins - chemistry
Membrane Glycoproteins - genetics
Molecular Sequence Data
Mutation, Missense
NADPH Oxidase 2
NADPH Oxidases - chemistry
NADPH Oxidases - genetics
Time Factors
title High-Performance Liquid Chromatography Under Partially Denaturing Conditions (dHPLC) is a Fast and Cost-Effective Method for Screening Molecular Defects: Four Novel Mutations Found in X-Linked Chronic Granulomatous Disease
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