Inter- and intra-specific genetic diversity of Iranian yarrow species Achillea santolina and Achillea tenuifolia based on ISSR and RAPD markers
Cultivation and preservation of yarrow has recently attracted wide attention due to its beneficial properties; however, genetic variation of Achillea species is still relatively unknown. We used RAPD and ISSR markers to assess genetic diversity in 16 accessions of yarrow belonging to two species nat...
Gespeichert in:
| Veröffentlicht in: | Genetics and molecular research 2012-01, Vol.11 (3), p.2855-2861 |
|---|---|
| Hauptverfasser: | , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 2861 |
|---|---|
| container_issue | 3 |
| container_start_page | 2855 |
| container_title | Genetics and molecular research |
| container_volume | 11 |
| creator | Ebrahimi, M Farajpour, M Rahimmalek, M |
| description | Cultivation and preservation of yarrow has recently attracted wide attention due to its beneficial properties; however, genetic variation of Achillea species is still relatively unknown. We used RAPD and ISSR markers to assess genetic diversity in 16 accessions of yarrow belonging to two species native to Iran. Seven ISSR and nine RAPD primers generated 187 amplified fragments, of which 159 were polymorphic. The similarity coefficient among Achillea tenuifolia accessions ranged from 61 to 86%, and from 40 to 84% among A. santolina accessions. A low similarity was observed between these two species (mean similarity = 0.36%). This low similarity is consistent with their geographical distribution. According to the results of cluster and PCA analyses, the two species completely separated from each other. These markers will aid in the identification of elite genotypes for domestication and breeding programs. |
| doi_str_mv | 10.4238/2012.August.27.1 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1080612475</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1080612475</sourcerecordid><originalsourceid>FETCH-LOGICAL-c341t-aaffbcb4910067e8a3b4f58a9599e74b8fd586ce57fd6aa9847324493600246e3</originalsourceid><addsrcrecordid>eNpNkU1v2zAMhoWhw5J2u-806NiLM0mWJfkYZP0IUGBD0p4N2qY6tY6cSXKL_Ir95TpJF-xEgnz4kuBLyFfOZlLk5rtgXMzmw-MQ00zoGf9AplxplRXKsLP_8gk5j_GJMVFIwz6RicgZ06VhU_J36ROGjIJvqfMpQBa32DjrGvqIHtMYW_eCIbq0o72lywDegac7CKF_pQcYI503v13XIdAIPvWd83BQPJUT-sHZsQG0hogt7T1drterA7Wa__pBNxCexzWfyUcLXcQv7_GCPFxf3S9us7ufN8vF_C5rcslTBmBt3dSy5IwpjQbyWtrCQFmUJWpZG9sWRjVYaNsqgNJInQspy1yNT5AK8wtyedTdhv7PgDFVGxcb7Drw2A-x4swwxYXUxYiyI9qEPsaAttoGN567G6Fqb0O1t6E62lAJXfFx5Nu7-lBvsD0N_Pt7_gYf_4X-</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1080612475</pqid></control><display><type>article</type><title>Inter- and intra-specific genetic diversity of Iranian yarrow species Achillea santolina and Achillea tenuifolia based on ISSR and RAPD markers</title><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><creator>Ebrahimi, M ; Farajpour, M ; Rahimmalek, M</creator><creatorcontrib>Ebrahimi, M ; Farajpour, M ; Rahimmalek, M</creatorcontrib><description>Cultivation and preservation of yarrow has recently attracted wide attention due to its beneficial properties; however, genetic variation of Achillea species is still relatively unknown. We used RAPD and ISSR markers to assess genetic diversity in 16 accessions of yarrow belonging to two species native to Iran. Seven ISSR and nine RAPD primers generated 187 amplified fragments, of which 159 were polymorphic. The similarity coefficient among Achillea tenuifolia accessions ranged from 61 to 86%, and from 40 to 84% among A. santolina accessions. A low similarity was observed between these two species (mean similarity = 0.36%). This low similarity is consistent with their geographical distribution. According to the results of cluster and PCA analyses, the two species completely separated from each other. These markers will aid in the identification of elite genotypes for domestication and breeding programs.</description><identifier>ISSN: 1676-5680</identifier><identifier>EISSN: 1676-5680</identifier><identifier>DOI: 10.4238/2012.August.27.1</identifier><identifier>PMID: 23007980</identifier><language>eng</language><publisher>Brazil</publisher><subject>Achillea - genetics ; Base Sequence ; Ecotype ; Genetic Markers ; Genetic Variation ; Geography ; Iran ; Microsatellite Repeats - genetics ; Molecular Sequence Data ; Phylogeny ; Polymerase Chain Reaction ; Principal Component Analysis ; Random Amplified Polymorphic DNA Technique ; Species Specificity</subject><ispartof>Genetics and molecular research, 2012-01, Vol.11 (3), p.2855-2861</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c341t-aaffbcb4910067e8a3b4f58a9599e74b8fd586ce57fd6aa9847324493600246e3</citedby><cites>FETCH-LOGICAL-c341t-aaffbcb4910067e8a3b4f58a9599e74b8fd586ce57fd6aa9847324493600246e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23007980$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ebrahimi, M</creatorcontrib><creatorcontrib>Farajpour, M</creatorcontrib><creatorcontrib>Rahimmalek, M</creatorcontrib><title>Inter- and intra-specific genetic diversity of Iranian yarrow species Achillea santolina and Achillea tenuifolia based on ISSR and RAPD markers</title><title>Genetics and molecular research</title><addtitle>Genet Mol Res</addtitle><description>Cultivation and preservation of yarrow has recently attracted wide attention due to its beneficial properties; however, genetic variation of Achillea species is still relatively unknown. We used RAPD and ISSR markers to assess genetic diversity in 16 accessions of yarrow belonging to two species native to Iran. Seven ISSR and nine RAPD primers generated 187 amplified fragments, of which 159 were polymorphic. The similarity coefficient among Achillea tenuifolia accessions ranged from 61 to 86%, and from 40 to 84% among A. santolina accessions. A low similarity was observed between these two species (mean similarity = 0.36%). This low similarity is consistent with their geographical distribution. According to the results of cluster and PCA analyses, the two species completely separated from each other. These markers will aid in the identification of elite genotypes for domestication and breeding programs.</description><subject>Achillea - genetics</subject><subject>Base Sequence</subject><subject>Ecotype</subject><subject>Genetic Markers</subject><subject>Genetic Variation</subject><subject>Geography</subject><subject>Iran</subject><subject>Microsatellite Repeats - genetics</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction</subject><subject>Principal Component Analysis</subject><subject>Random Amplified Polymorphic DNA Technique</subject><subject>Species Specificity</subject><issn>1676-5680</issn><issn>1676-5680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkU1v2zAMhoWhw5J2u-806NiLM0mWJfkYZP0IUGBD0p4N2qY6tY6cSXKL_Ir95TpJF-xEgnz4kuBLyFfOZlLk5rtgXMzmw-MQ00zoGf9AplxplRXKsLP_8gk5j_GJMVFIwz6RicgZ06VhU_J36ROGjIJvqfMpQBa32DjrGvqIHtMYW_eCIbq0o72lywDegac7CKF_pQcYI503v13XIdAIPvWd83BQPJUT-sHZsQG0hogt7T1drterA7Wa__pBNxCexzWfyUcLXcQv7_GCPFxf3S9us7ufN8vF_C5rcslTBmBt3dSy5IwpjQbyWtrCQFmUJWpZG9sWRjVYaNsqgNJInQspy1yNT5AK8wtyedTdhv7PgDFVGxcb7Drw2A-x4swwxYXUxYiyI9qEPsaAttoGN567G6Fqb0O1t6E62lAJXfFx5Nu7-lBvsD0N_Pt7_gYf_4X-</recordid><startdate>20120101</startdate><enddate>20120101</enddate><creator>Ebrahimi, M</creator><creator>Farajpour, M</creator><creator>Rahimmalek, M</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120101</creationdate><title>Inter- and intra-specific genetic diversity of Iranian yarrow species Achillea santolina and Achillea tenuifolia based on ISSR and RAPD markers</title><author>Ebrahimi, M ; Farajpour, M ; Rahimmalek, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c341t-aaffbcb4910067e8a3b4f58a9599e74b8fd586ce57fd6aa9847324493600246e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Achillea - genetics</topic><topic>Base Sequence</topic><topic>Ecotype</topic><topic>Genetic Markers</topic><topic>Genetic Variation</topic><topic>Geography</topic><topic>Iran</topic><topic>Microsatellite Repeats - genetics</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction</topic><topic>Principal Component Analysis</topic><topic>Random Amplified Polymorphic DNA Technique</topic><topic>Species Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ebrahimi, M</creatorcontrib><creatorcontrib>Farajpour, M</creatorcontrib><creatorcontrib>Rahimmalek, M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Genetics and molecular research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ebrahimi, M</au><au>Farajpour, M</au><au>Rahimmalek, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Inter- and intra-specific genetic diversity of Iranian yarrow species Achillea santolina and Achillea tenuifolia based on ISSR and RAPD markers</atitle><jtitle>Genetics and molecular research</jtitle><addtitle>Genet Mol Res</addtitle><date>2012-01-01</date><risdate>2012</risdate><volume>11</volume><issue>3</issue><spage>2855</spage><epage>2861</epage><pages>2855-2861</pages><issn>1676-5680</issn><eissn>1676-5680</eissn><abstract>Cultivation and preservation of yarrow has recently attracted wide attention due to its beneficial properties; however, genetic variation of Achillea species is still relatively unknown. We used RAPD and ISSR markers to assess genetic diversity in 16 accessions of yarrow belonging to two species native to Iran. Seven ISSR and nine RAPD primers generated 187 amplified fragments, of which 159 were polymorphic. The similarity coefficient among Achillea tenuifolia accessions ranged from 61 to 86%, and from 40 to 84% among A. santolina accessions. A low similarity was observed between these two species (mean similarity = 0.36%). This low similarity is consistent with their geographical distribution. According to the results of cluster and PCA analyses, the two species completely separated from each other. These markers will aid in the identification of elite genotypes for domestication and breeding programs.</abstract><cop>Brazil</cop><pmid>23007980</pmid><doi>10.4238/2012.August.27.1</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1676-5680 |
| ispartof | Genetics and molecular research, 2012-01, Vol.11 (3), p.2855-2861 |
| issn | 1676-5680 1676-5680 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1080612475 |
| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals |
| subjects | Achillea - genetics Base Sequence Ecotype Genetic Markers Genetic Variation Geography Iran Microsatellite Repeats - genetics Molecular Sequence Data Phylogeny Polymerase Chain Reaction Principal Component Analysis Random Amplified Polymorphic DNA Technique Species Specificity |
| title | Inter- and intra-specific genetic diversity of Iranian yarrow species Achillea santolina and Achillea tenuifolia based on ISSR and RAPD markers |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-23T14%3A30%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Inter-%20and%20intra-specific%20genetic%20diversity%20of%20Iranian%20yarrow%20species%20Achillea%20santolina%20and%20Achillea%20tenuifolia%20based%20on%20ISSR%20and%20RAPD%20markers&rft.jtitle=Genetics%20and%20molecular%20research&rft.au=Ebrahimi,%20M&rft.date=2012-01-01&rft.volume=11&rft.issue=3&rft.spage=2855&rft.epage=2861&rft.pages=2855-2861&rft.issn=1676-5680&rft.eissn=1676-5680&rft_id=info:doi/10.4238/2012.August.27.1&rft_dat=%3Cproquest_cross%3E1080612475%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1080612475&rft_id=info:pmid/23007980&rfr_iscdi=true |