Molecular characterization of an opossum Didelphis albiventris (Marsupialia: Didelphidae) population in an urban fragment of the Brazilian Atlantic rainforest and support to species barcode identification
We made a molecular study of 40 opossums, Didelphis albiventris, from an urban fragment of the Atlantic Rainforest in southeastern Brazil, analyzing a 653-bp sequence of cytochrome c oxidase, subunit I. We found three close connected haplotypes, with low nucleotide diversity and a haplotype diversit...
Gespeichert in:
| Veröffentlicht in: | Genetics and molecular research 2012-01, Vol.11 (3), p.2487-2496 |
|---|---|
| Hauptverfasser: | , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 2496 |
|---|---|
| container_issue | 3 |
| container_start_page | 2487 |
| container_title | Genetics and molecular research |
| container_volume | 11 |
| creator | Sousa, L C C Gontijo, C M F Lacorte, G A Meireles, S N Silva, A P Fonseca, C G |
| description | We made a molecular study of 40 opossums, Didelphis albiventris, from an urban fragment of the Atlantic Rainforest in southeastern Brazil, analyzing a 653-bp sequence of cytochrome c oxidase, subunit I. We found three close connected haplotypes, with low nucleotide diversity and a haplotype diversity of 59.1% and confirmed sympatry between D. albiventris and D. aurita in this region. The clear phylogenetic separation shows the appropriateness of DNA barcode identification methodology for effectively discriminating between these opossum species. |
| doi_str_mv | 10.4238/2012.June.15.4 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1037242913</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1037242913</sourcerecordid><originalsourceid>FETCH-LOGICAL-c335t-77e8ff1ad7bdbda383ce9a1d62f768e7af6767940e6266bfc539aa42cc5333fa3</originalsourceid><addsrcrecordid>eNpNkUtv1TAQhS0Eog_YskRelsUNsZ3EuexKoTzUig2so4k95holsbEdJPob-VFM2lKxmZnFOd-M5jD2QtRVI1X_WtZCVp_XBSvRVs0jdiw63e3arq8f_zcfsZOcf9S1bJu-fsqOpNS97GR3zP5chwnNOkHi5gAJTMHkb6D4sPDgOFCNIed15u-8xSkefOYwjf4XLiXRfHYNKa_Rw-ThzYPGAr7iMUTi3pL8spHWNFJ1Cb7P5N7w5YD8bYIbT-6Fn5cJluINT-AXFxLmQjbLiR9DKrwEniMaj5mPkEywyGkfOZw3t3uesScOpozP7_sp-3b5_uvFx93Vlw-fLs6vdkaptuy0xt45AVaPdrSgemVwD8J20umuRw2O_qb3TY30om50plV7gEYaGpRyoE7Z2R03pvBzpTOH2WeDE52PYc2DqJWWjdwLRdLqTmoSvTGhG2LyM6TfJBq2BIctwWFLcBDt0JDh5T17HWe0D_J_kam_zuueKg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1037242913</pqid></control><display><type>article</type><title>Molecular characterization of an opossum Didelphis albiventris (Marsupialia: Didelphidae) population in an urban fragment of the Brazilian Atlantic rainforest and support to species barcode identification</title><source>MEDLINE</source><source>EZB-FREE-00999 freely available EZB journals</source><creator>Sousa, L C C ; Gontijo, C M F ; Lacorte, G A ; Meireles, S N ; Silva, A P ; Fonseca, C G</creator><creatorcontrib>Sousa, L C C ; Gontijo, C M F ; Lacorte, G A ; Meireles, S N ; Silva, A P ; Fonseca, C G</creatorcontrib><description>We made a molecular study of 40 opossums, Didelphis albiventris, from an urban fragment of the Atlantic Rainforest in southeastern Brazil, analyzing a 653-bp sequence of cytochrome c oxidase, subunit I. We found three close connected haplotypes, with low nucleotide diversity and a haplotype diversity of 59.1% and confirmed sympatry between D. albiventris and D. aurita in this region. The clear phylogenetic separation shows the appropriateness of DNA barcode identification methodology for effectively discriminating between these opossum species.</description><identifier>ISSN: 1676-5680</identifier><identifier>EISSN: 1676-5680</identifier><identifier>DOI: 10.4238/2012.June.15.4</identifier><identifier>PMID: 22782626</identifier><language>eng</language><publisher>Brazil</publisher><subject>Animals ; Atlantic Ocean ; Brazil ; Cities ; Didelphis - classification ; Didelphis - genetics ; DNA Barcoding, Taxonomic - methods ; Genetics, Population ; Geography ; Haplotypes - genetics ; Molecular Sequence Data ; Phylogeny ; Species Specificity ; Trees</subject><ispartof>Genetics and molecular research, 2012-01, Vol.11 (3), p.2487-2496</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-77e8ff1ad7bdbda383ce9a1d62f768e7af6767940e6266bfc539aa42cc5333fa3</citedby><cites>FETCH-LOGICAL-c335t-77e8ff1ad7bdbda383ce9a1d62f768e7af6767940e6266bfc539aa42cc5333fa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27902,27903</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22782626$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sousa, L C C</creatorcontrib><creatorcontrib>Gontijo, C M F</creatorcontrib><creatorcontrib>Lacorte, G A</creatorcontrib><creatorcontrib>Meireles, S N</creatorcontrib><creatorcontrib>Silva, A P</creatorcontrib><creatorcontrib>Fonseca, C G</creatorcontrib><title>Molecular characterization of an opossum Didelphis albiventris (Marsupialia: Didelphidae) population in an urban fragment of the Brazilian Atlantic rainforest and support to species barcode identification</title><title>Genetics and molecular research</title><addtitle>Genet Mol Res</addtitle><description>We made a molecular study of 40 opossums, Didelphis albiventris, from an urban fragment of the Atlantic Rainforest in southeastern Brazil, analyzing a 653-bp sequence of cytochrome c oxidase, subunit I. We found three close connected haplotypes, with low nucleotide diversity and a haplotype diversity of 59.1% and confirmed sympatry between D. albiventris and D. aurita in this region. The clear phylogenetic separation shows the appropriateness of DNA barcode identification methodology for effectively discriminating between these opossum species.</description><subject>Animals</subject><subject>Atlantic Ocean</subject><subject>Brazil</subject><subject>Cities</subject><subject>Didelphis - classification</subject><subject>Didelphis - genetics</subject><subject>DNA Barcoding, Taxonomic - methods</subject><subject>Genetics, Population</subject><subject>Geography</subject><subject>Haplotypes - genetics</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Species Specificity</subject><subject>Trees</subject><issn>1676-5680</issn><issn>1676-5680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkUtv1TAQhS0Eog_YskRelsUNsZ3EuexKoTzUig2so4k95holsbEdJPob-VFM2lKxmZnFOd-M5jD2QtRVI1X_WtZCVp_XBSvRVs0jdiw63e3arq8f_zcfsZOcf9S1bJu-fsqOpNS97GR3zP5chwnNOkHi5gAJTMHkb6D4sPDgOFCNIed15u-8xSkefOYwjf4XLiXRfHYNKa_Rw-ThzYPGAr7iMUTi3pL8spHWNFJ1Cb7P5N7w5YD8bYIbT-6Fn5cJluINT-AXFxLmQjbLiR9DKrwEniMaj5mPkEywyGkfOZw3t3uesScOpozP7_sp-3b5_uvFx93Vlw-fLs6vdkaptuy0xt45AVaPdrSgemVwD8J20umuRw2O_qb3TY30om50plV7gEYaGpRyoE7Z2R03pvBzpTOH2WeDE52PYc2DqJWWjdwLRdLqTmoSvTGhG2LyM6TfJBq2BIctwWFLcBDt0JDh5T17HWe0D_J_kam_zuueKg</recordid><startdate>20120101</startdate><enddate>20120101</enddate><creator>Sousa, L C C</creator><creator>Gontijo, C M F</creator><creator>Lacorte, G A</creator><creator>Meireles, S N</creator><creator>Silva, A P</creator><creator>Fonseca, C G</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120101</creationdate><title>Molecular characterization of an opossum Didelphis albiventris (Marsupialia: Didelphidae) population in an urban fragment of the Brazilian Atlantic rainforest and support to species barcode identification</title><author>Sousa, L C C ; Gontijo, C M F ; Lacorte, G A ; Meireles, S N ; Silva, A P ; Fonseca, C G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-77e8ff1ad7bdbda383ce9a1d62f768e7af6767940e6266bfc539aa42cc5333fa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Animals</topic><topic>Atlantic Ocean</topic><topic>Brazil</topic><topic>Cities</topic><topic>Didelphis - classification</topic><topic>Didelphis - genetics</topic><topic>DNA Barcoding, Taxonomic - methods</topic><topic>Genetics, Population</topic><topic>Geography</topic><topic>Haplotypes - genetics</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Species Specificity</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sousa, L C C</creatorcontrib><creatorcontrib>Gontijo, C M F</creatorcontrib><creatorcontrib>Lacorte, G A</creatorcontrib><creatorcontrib>Meireles, S N</creatorcontrib><creatorcontrib>Silva, A P</creatorcontrib><creatorcontrib>Fonseca, C G</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Genetics and molecular research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sousa, L C C</au><au>Gontijo, C M F</au><au>Lacorte, G A</au><au>Meireles, S N</au><au>Silva, A P</au><au>Fonseca, C G</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular characterization of an opossum Didelphis albiventris (Marsupialia: Didelphidae) population in an urban fragment of the Brazilian Atlantic rainforest and support to species barcode identification</atitle><jtitle>Genetics and molecular research</jtitle><addtitle>Genet Mol Res</addtitle><date>2012-01-01</date><risdate>2012</risdate><volume>11</volume><issue>3</issue><spage>2487</spage><epage>2496</epage><pages>2487-2496</pages><issn>1676-5680</issn><eissn>1676-5680</eissn><abstract>We made a molecular study of 40 opossums, Didelphis albiventris, from an urban fragment of the Atlantic Rainforest in southeastern Brazil, analyzing a 653-bp sequence of cytochrome c oxidase, subunit I. We found three close connected haplotypes, with low nucleotide diversity and a haplotype diversity of 59.1% and confirmed sympatry between D. albiventris and D. aurita in this region. The clear phylogenetic separation shows the appropriateness of DNA barcode identification methodology for effectively discriminating between these opossum species.</abstract><cop>Brazil</cop><pmid>22782626</pmid><doi>10.4238/2012.June.15.4</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1676-5680 |
| ispartof | Genetics and molecular research, 2012-01, Vol.11 (3), p.2487-2496 |
| issn | 1676-5680 1676-5680 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1037242913 |
| source | MEDLINE; EZB-FREE-00999 freely available EZB journals |
| subjects | Animals Atlantic Ocean Brazil Cities Didelphis - classification Didelphis - genetics DNA Barcoding, Taxonomic - methods Genetics, Population Geography Haplotypes - genetics Molecular Sequence Data Phylogeny Species Specificity Trees |
| title | Molecular characterization of an opossum Didelphis albiventris (Marsupialia: Didelphidae) population in an urban fragment of the Brazilian Atlantic rainforest and support to species barcode identification |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-27T10%3A09%3A02IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Molecular%20characterization%20of%20an%20opossum%20Didelphis%20albiventris%20(Marsupialia:%20Didelphidae)%20population%20in%20an%20urban%20fragment%20of%20the%20Brazilian%20Atlantic%20rainforest%20and%20support%20to%20species%20barcode%20identification&rft.jtitle=Genetics%20and%20molecular%20research&rft.au=Sousa,%20L%20C%20C&rft.date=2012-01-01&rft.volume=11&rft.issue=3&rft.spage=2487&rft.epage=2496&rft.pages=2487-2496&rft.issn=1676-5680&rft.eissn=1676-5680&rft_id=info:doi/10.4238/2012.June.15.4&rft_dat=%3Cproquest_cross%3E1037242913%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1037242913&rft_id=info:pmid/22782626&rfr_iscdi=true |