Genetic diversity and population structure of mahaleb cherry ( Prunus mahaleb L.) and sweet cherry ( Prunus avium L.) using SRAP markers
Genetic diversity of 47 Mahaleb cherry genotypes ( Prunus mahaleb L.) and six sweet cherry accessions ( Prunus avium L.) was studied using 13 SRAP primer combinations. The number of polymorphic fragments detected per primer combination ranged from 1 to 10 bands with an average 4.23 bands. Average PI...
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| Veröffentlicht in: | Biochemical systematics and ecology 2012-02, Vol.40, p.112-117 |
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| creator | Abedian, Masoud Talebi, Majid Golmohammdi, Hamid Reza Sayed-Tabatabaei, Badraldin Ebrahim |
| description | Genetic diversity of 47 Mahaleb cherry genotypes (
Prunus mahaleb L.) and six sweet cherry accessions (
Prunus avium L.) was studied using 13 SRAP primer combinations. The number of polymorphic fragments detected per primer combination ranged from 1 to 10 bands with an average 4.23 bands. Average PIC was 0.42 over all primer combinations. Cluster analysis using UPGMA method and Dice’s coefficient grouped the species into two main clusters with similarity coefficient ranging from 0.16 to 0.93. Sum of first three PCAs could be represented most of (65.64%) the total variation in the original dimensions and confirmed the results of cluster analysis. Based on AMOVA results, the allele numbers among groups and species studied in this research were more than those observed within them. This is the first report of using SRAP marker as a tool for determining genetic variation among and within
P. mahaleb and
P. avium.
► We used SRAP markers for genetic diversity of
Prunus mahaleb and
P. avium genotypes. ► The dendrogram grouped the genotypes according to their species. ► There were significant genetic differences among species based on AMOVA results. |
| doi_str_mv | 10.1016/j.bse.2011.10.005 |
| format | Article |
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Prunus mahaleb L.) and six sweet cherry accessions (
Prunus avium L.) was studied using 13 SRAP primer combinations. The number of polymorphic fragments detected per primer combination ranged from 1 to 10 bands with an average 4.23 bands. Average PIC was 0.42 over all primer combinations. Cluster analysis using UPGMA method and Dice’s coefficient grouped the species into two main clusters with similarity coefficient ranging from 0.16 to 0.93. Sum of first three PCAs could be represented most of (65.64%) the total variation in the original dimensions and confirmed the results of cluster analysis. Based on AMOVA results, the allele numbers among groups and species studied in this research were more than those observed within them. This is the first report of using SRAP marker as a tool for determining genetic variation among and within
P. mahaleb and
P. avium.
► We used SRAP markers for genetic diversity of
Prunus mahaleb and
P. avium genotypes. ► The dendrogram grouped the genotypes according to their species. ► There were significant genetic differences among species based on AMOVA results.</description><identifier>ISSN: 0305-1978</identifier><identifier>EISSN: 1873-2925</identifier><identifier>DOI: 10.1016/j.bse.2011.10.005</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>alleles ; AMOVA ; cluster analysis ; Genetic diversity ; genetic variation ; genotype ; Genotypes ; Mahaleb cherry ; Population structure ; Primers ; Prunus avium ; Prunus mahaleb ; SRAP ; Sweet cherry ; Sweet taste</subject><ispartof>Biochemical systematics and ecology, 2012-02, Vol.40, p.112-117</ispartof><rights>2011 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c354t-56618b4d92338cb8729b2f8e65ed313bd5433dec0eccde3edbed0159259aeeaa3</citedby><cites>FETCH-LOGICAL-c354t-56618b4d92338cb8729b2f8e65ed313bd5433dec0eccde3edbed0159259aeeaa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.bse.2011.10.005$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,27926,27927,45997</link.rule.ids></links><search><creatorcontrib>Abedian, Masoud</creatorcontrib><creatorcontrib>Talebi, Majid</creatorcontrib><creatorcontrib>Golmohammdi, Hamid Reza</creatorcontrib><creatorcontrib>Sayed-Tabatabaei, Badraldin Ebrahim</creatorcontrib><title>Genetic diversity and population structure of mahaleb cherry ( Prunus mahaleb L.) and sweet cherry ( Prunus avium L.) using SRAP markers</title><title>Biochemical systematics and ecology</title><description>Genetic diversity of 47 Mahaleb cherry genotypes (
Prunus mahaleb L.) and six sweet cherry accessions (
Prunus avium L.) was studied using 13 SRAP primer combinations. The number of polymorphic fragments detected per primer combination ranged from 1 to 10 bands with an average 4.23 bands. Average PIC was 0.42 over all primer combinations. Cluster analysis using UPGMA method and Dice’s coefficient grouped the species into two main clusters with similarity coefficient ranging from 0.16 to 0.93. Sum of first three PCAs could be represented most of (65.64%) the total variation in the original dimensions and confirmed the results of cluster analysis. Based on AMOVA results, the allele numbers among groups and species studied in this research were more than those observed within them. This is the first report of using SRAP marker as a tool for determining genetic variation among and within
P. mahaleb and
P. avium.
► We used SRAP markers for genetic diversity of
Prunus mahaleb and
P. avium genotypes. ► The dendrogram grouped the genotypes according to their species. ► There were significant genetic differences among species based on AMOVA results.</description><subject>alleles</subject><subject>AMOVA</subject><subject>cluster analysis</subject><subject>Genetic diversity</subject><subject>genetic variation</subject><subject>genotype</subject><subject>Genotypes</subject><subject>Mahaleb cherry</subject><subject>Population structure</subject><subject>Primers</subject><subject>Prunus avium</subject><subject>Prunus mahaleb</subject><subject>SRAP</subject><subject>Sweet cherry</subject><subject>Sweet taste</subject><issn>0305-1978</issn><issn>1873-2925</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNp9kMtOwzAQRS0EEqXwAazwEhYJdhznIVYI8ZIqgSisLceegEuaFD-K-gd8Nm6L2CCxGnl07sz4IHRMSUoJLc5naeMgzQil8Z0SwnfQiFYlS7I647toRBjhCa3Lah8dODcjkcizcoS-bqEHbxTWZgnWGb_Cstd4MSxCJ70Zeuy8DcoHC3ho8Vy-yQ4arN7A2hU-xY829MH99ifp2SbvPgH8H0ouTZhvmOBM_4qnT5ePMWrf4-ZDtNfKzsHRTx2jl5vr56u7ZPJwe391OUkU47lPeFHQqsl1nTFWqaYqs7rJ2goKDppR1mieM6ZBEVBKAwPdgCaURwm1BJCSjdHpdu7CDh8BnBdz4xR0nexhCE5QwvKK1GVOI0q3qLKDcxZasbAmnruKkFhbFzMRrYu19XUrOo2Zk22mlYOQr9Y48TKNQE4iz3lRR-JiS0D85dKAFU4Z6BVoY0F5oQfzz_xvyOqUqA</recordid><startdate>20120201</startdate><enddate>20120201</enddate><creator>Abedian, Masoud</creator><creator>Talebi, Majid</creator><creator>Golmohammdi, Hamid Reza</creator><creator>Sayed-Tabatabaei, Badraldin Ebrahim</creator><general>Elsevier Ltd</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20120201</creationdate><title>Genetic diversity and population structure of mahaleb cherry ( Prunus mahaleb L.) and sweet cherry ( Prunus avium L.) using SRAP markers</title><author>Abedian, Masoud ; Talebi, Majid ; Golmohammdi, Hamid Reza ; Sayed-Tabatabaei, Badraldin Ebrahim</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c354t-56618b4d92338cb8729b2f8e65ed313bd5433dec0eccde3edbed0159259aeeaa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>alleles</topic><topic>AMOVA</topic><topic>cluster analysis</topic><topic>Genetic diversity</topic><topic>genetic variation</topic><topic>genotype</topic><topic>Genotypes</topic><topic>Mahaleb cherry</topic><topic>Population structure</topic><topic>Primers</topic><topic>Prunus avium</topic><topic>Prunus mahaleb</topic><topic>SRAP</topic><topic>Sweet cherry</topic><topic>Sweet taste</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Abedian, Masoud</creatorcontrib><creatorcontrib>Talebi, Majid</creatorcontrib><creatorcontrib>Golmohammdi, Hamid Reza</creatorcontrib><creatorcontrib>Sayed-Tabatabaei, Badraldin Ebrahim</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Biochemical systematics and ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Abedian, Masoud</au><au>Talebi, Majid</au><au>Golmohammdi, Hamid Reza</au><au>Sayed-Tabatabaei, Badraldin Ebrahim</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and population structure of mahaleb cherry ( Prunus mahaleb L.) and sweet cherry ( Prunus avium L.) using SRAP markers</atitle><jtitle>Biochemical systematics and ecology</jtitle><date>2012-02-01</date><risdate>2012</risdate><volume>40</volume><spage>112</spage><epage>117</epage><pages>112-117</pages><issn>0305-1978</issn><eissn>1873-2925</eissn><abstract>Genetic diversity of 47 Mahaleb cherry genotypes (
Prunus mahaleb L.) and six sweet cherry accessions (
Prunus avium L.) was studied using 13 SRAP primer combinations. The number of polymorphic fragments detected per primer combination ranged from 1 to 10 bands with an average 4.23 bands. Average PIC was 0.42 over all primer combinations. Cluster analysis using UPGMA method and Dice’s coefficient grouped the species into two main clusters with similarity coefficient ranging from 0.16 to 0.93. Sum of first three PCAs could be represented most of (65.64%) the total variation in the original dimensions and confirmed the results of cluster analysis. Based on AMOVA results, the allele numbers among groups and species studied in this research were more than those observed within them. This is the first report of using SRAP marker as a tool for determining genetic variation among and within
P. mahaleb and
P. avium.
► We used SRAP markers for genetic diversity of
Prunus mahaleb and
P. avium genotypes. ► The dendrogram grouped the genotypes according to their species. ► There were significant genetic differences among species based on AMOVA results.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.bse.2011.10.005</doi><tpages>6</tpages></addata></record> |
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| ispartof | Biochemical systematics and ecology, 2012-02, Vol.40, p.112-117 |
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| language | eng |
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| subjects | alleles AMOVA cluster analysis Genetic diversity genetic variation genotype Genotypes Mahaleb cherry Population structure Primers Prunus avium Prunus mahaleb SRAP Sweet cherry Sweet taste |
| title | Genetic diversity and population structure of mahaleb cherry ( Prunus mahaleb L.) and sweet cherry ( Prunus avium L.) using SRAP markers |
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