Screening of PC and PMMA-binding peptides for site-specific immobilization of proteins
In the present study, we used proteomic research technology to develop a method for the screening and evaluation of material-binding peptides for protein immobilization. Using this screening method, soluble Escherichia coli proteins that preferentially adsorbed onto polycarbonate (PC) and poly(methy...
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Veröffentlicht in: | Journal of biotechnology 2012-08, Vol.160 (3-4), p.222-228 |
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description | In the present study, we used proteomic research technology to develop a method for the screening and evaluation of material-binding peptides for protein immobilization. Using this screening method, soluble Escherichia coli proteins that preferentially adsorbed onto polycarbonate (PC) and poly(methylmethacrylate) (PMMA) as model plastic materials were first isolated and identified by 2-dimensional electrophoresis (2DE) combined with peptide mass fingerprinting (PMF). The genes of identified protein candidates (ELN, MLT, OMP, and BIF) that exhibited a hexahistidine tag (6×His-tag) were over-expressed by E. coli BL21 (DE3), and the proteins were purified by IMAC affinity chromatography. The candidates for PC and PMMA-binding peptides were isolated from peptide fragments from affinity protein candidates, which were digested with trypsin and chymotrypsin. Consequently, 5 candidates for the PC-binding peptide and 2 candidates for the PMMA-binding peptide were successfully identified by MALDI-TOF MS. All of the peptides identified were introduced to the C-terminus of glutathione S-transferase (GST) as a model protein for immobilization. Adsorption of peptide-fused and wild-type GSTs onto the plastic surfaces was directly monitored using a quartz crystal microbalance (QCM) device. Consequently, genetic fusion of PC-MLT8 and PC-OMP6 as PC-binders and PM-OMP25 as a PMMA-binder significantly enhanced the adsorption rates of GST, achieving an adsorption density that was more than 10 times higher than that of wild-type GST. Furthermore, the residual activity levels of GST-PC-OMP6 and GST-PM-OMP25 in the adsorption state were 2 times higher than that of wild-type GST. Thus, the PC and PMMA-binding peptides identified in this study, namely PC-OMP6 and PM-OMP25, were considerably useful for site-specific immobilization of proteins, while maintaining a higher adsorption density and residual activity levels. The method demonstrated in this study will be applicable to the isolation of a variety of material-binding peptides against the surfaces of unique materials. |
doi_str_mv | 10.1016/j.jbiotec.2012.02.010 |
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Using this screening method, soluble Escherichia coli proteins that preferentially adsorbed onto polycarbonate (PC) and poly(methylmethacrylate) (PMMA) as model plastic materials were first isolated and identified by 2-dimensional electrophoresis (2DE) combined with peptide mass fingerprinting (PMF). The genes of identified protein candidates (ELN, MLT, OMP, and BIF) that exhibited a hexahistidine tag (6×His-tag) were over-expressed by E. coli BL21 (DE3), and the proteins were purified by IMAC affinity chromatography. The candidates for PC and PMMA-binding peptides were isolated from peptide fragments from affinity protein candidates, which were digested with trypsin and chymotrypsin. Consequently, 5 candidates for the PC-binding peptide and 2 candidates for the PMMA-binding peptide were successfully identified by MALDI-TOF MS. All of the peptides identified were introduced to the C-terminus of glutathione S-transferase (GST) as a model protein for immobilization. Adsorption of peptide-fused and wild-type GSTs onto the plastic surfaces was directly monitored using a quartz crystal microbalance (QCM) device. Consequently, genetic fusion of PC-MLT8 and PC-OMP6 as PC-binders and PM-OMP25 as a PMMA-binder significantly enhanced the adsorption rates of GST, achieving an adsorption density that was more than 10 times higher than that of wild-type GST. Furthermore, the residual activity levels of GST-PC-OMP6 and GST-PM-OMP25 in the adsorption state were 2 times higher than that of wild-type GST. Thus, the PC and PMMA-binding peptides identified in this study, namely PC-OMP6 and PM-OMP25, were considerably useful for site-specific immobilization of proteins, while maintaining a higher adsorption density and residual activity levels. The method demonstrated in this study will be applicable to the isolation of a variety of material-binding peptides against the surfaces of unique materials.</description><identifier>ISSN: 0168-1656</identifier><identifier>EISSN: 1873-4863</identifier><identifier>DOI: 10.1016/j.jbiotec.2012.02.010</identifier><identifier>PMID: 22426519</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Adsorption ; affinity chromatography ; Affinity peptide tag ; Amino Acid Sequence ; Binding Sites ; biotechnology ; chymotrypsin ; Escherichia coli ; gene overexpression ; genes ; glutathione transferase ; methylmethacrylate ; Molecular Sequence Data ; Peptide Mapping - methods ; peptides ; Peptides - chemistry ; Polycarboxylate Cement - chemistry ; Polymethyl Methacrylate - chemistry ; Protein Binding ; Protein immobilization ; Protein Interaction Mapping - methods ; proteins ; Proteome analysis ; proteomics ; quartz ; screening ; trypsin ; two-dimensional gel electrophoresis</subject><ispartof>Journal of biotechnology, 2012-08, Vol.160 (3-4), p.222-228</ispartof><rights>2012 Elsevier B.V.</rights><rights>Copyright © 2012 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c455t-7e6c2e317d7472a63cc75047bca1678a7716c0a605ba69049c678fe66299c7303</citedby><cites>FETCH-LOGICAL-c455t-7e6c2e317d7472a63cc75047bca1678a7716c0a605ba69049c678fe66299c7303</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.jbiotec.2012.02.010$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22426519$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kumada, Yoichi</creatorcontrib><creatorcontrib>Murata, Sho</creatorcontrib><creatorcontrib>Ishikawa, Yasuyuki</creatorcontrib><creatorcontrib>Nakatsuka, Kazuki</creatorcontrib><creatorcontrib>Kishimoto, Michimasa</creatorcontrib><title>Screening of PC and PMMA-binding peptides for site-specific immobilization of proteins</title><title>Journal of biotechnology</title><addtitle>J Biotechnol</addtitle><description>In the present study, we used proteomic research technology to develop a method for the screening and evaluation of material-binding peptides for protein immobilization. Using this screening method, soluble Escherichia coli proteins that preferentially adsorbed onto polycarbonate (PC) and poly(methylmethacrylate) (PMMA) as model plastic materials were first isolated and identified by 2-dimensional electrophoresis (2DE) combined with peptide mass fingerprinting (PMF). The genes of identified protein candidates (ELN, MLT, OMP, and BIF) that exhibited a hexahistidine tag (6×His-tag) were over-expressed by E. coli BL21 (DE3), and the proteins were purified by IMAC affinity chromatography. The candidates for PC and PMMA-binding peptides were isolated from peptide fragments from affinity protein candidates, which were digested with trypsin and chymotrypsin. Consequently, 5 candidates for the PC-binding peptide and 2 candidates for the PMMA-binding peptide were successfully identified by MALDI-TOF MS. All of the peptides identified were introduced to the C-terminus of glutathione S-transferase (GST) as a model protein for immobilization. Adsorption of peptide-fused and wild-type GSTs onto the plastic surfaces was directly monitored using a quartz crystal microbalance (QCM) device. Consequently, genetic fusion of PC-MLT8 and PC-OMP6 as PC-binders and PM-OMP25 as a PMMA-binder significantly enhanced the adsorption rates of GST, achieving an adsorption density that was more than 10 times higher than that of wild-type GST. Furthermore, the residual activity levels of GST-PC-OMP6 and GST-PM-OMP25 in the adsorption state were 2 times higher than that of wild-type GST. Thus, the PC and PMMA-binding peptides identified in this study, namely PC-OMP6 and PM-OMP25, were considerably useful for site-specific immobilization of proteins, while maintaining a higher adsorption density and residual activity levels. The method demonstrated in this study will be applicable to the isolation of a variety of material-binding peptides against the surfaces of unique materials.</description><subject>Adsorption</subject><subject>affinity chromatography</subject><subject>Affinity peptide tag</subject><subject>Amino Acid Sequence</subject><subject>Binding Sites</subject><subject>biotechnology</subject><subject>chymotrypsin</subject><subject>Escherichia coli</subject><subject>gene overexpression</subject><subject>genes</subject><subject>glutathione transferase</subject><subject>methylmethacrylate</subject><subject>Molecular Sequence Data</subject><subject>Peptide Mapping - methods</subject><subject>peptides</subject><subject>Peptides - chemistry</subject><subject>Polycarboxylate Cement - chemistry</subject><subject>Polymethyl Methacrylate - chemistry</subject><subject>Protein Binding</subject><subject>Protein immobilization</subject><subject>Protein Interaction Mapping - methods</subject><subject>proteins</subject><subject>Proteome analysis</subject><subject>proteomics</subject><subject>quartz</subject><subject>screening</subject><subject>trypsin</subject><subject>two-dimensional gel electrophoresis</subject><issn>0168-1656</issn><issn>1873-4863</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE-L1EAQxRtR3HH1I6g5eslY3Ul3JydZhvUP7OLCul6bTqWy1DBJx-6MoJ_eDjN6FQoKil-993hCvJawlSDN-_1233FYCLcKpNpCHglPxEY2tirrxlRPxSZzTSmNNhfiRUp7AKhbLZ-LC6VqZbRsN-L7PUaiiafHIgzF3a7wU1_c3d5elR1P_XqeaV64p1QMIRaJFyrTTMgDY8HjGDo-8G-_cJhWgTnmSDyll-LZ4A-JXp33pXj4eP1t97m8-frpy-7qpsRa66W0ZFBRJW1va6u8qRCthtp26KWxjbdWGgRvQHfetDk95utAxqi2RVtBdSnenXSz8Y8jpcWNnJAOBz9ROCYnQVnTQAMmo_qEYgwpRRrcHHn08VeG3Fqp27tzpW6t1EEeuVq8OVscu5H6f19_O8zA2xMw-OD8Y-TkHu6zgoYsWiu1Wn84EZSr-MkUXUKmCannSLi4PvB_QvwBXA6SEQ</recordid><startdate>20120831</startdate><enddate>20120831</enddate><creator>Kumada, Yoichi</creator><creator>Murata, Sho</creator><creator>Ishikawa, Yasuyuki</creator><creator>Nakatsuka, Kazuki</creator><creator>Kishimoto, Michimasa</creator><general>Elsevier B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120831</creationdate><title>Screening of PC and PMMA-binding peptides for site-specific immobilization of proteins</title><author>Kumada, Yoichi ; Murata, Sho ; Ishikawa, Yasuyuki ; Nakatsuka, Kazuki ; Kishimoto, Michimasa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c455t-7e6c2e317d7472a63cc75047bca1678a7716c0a605ba69049c678fe66299c7303</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Adsorption</topic><topic>affinity chromatography</topic><topic>Affinity peptide tag</topic><topic>Amino Acid Sequence</topic><topic>Binding Sites</topic><topic>biotechnology</topic><topic>chymotrypsin</topic><topic>Escherichia coli</topic><topic>gene overexpression</topic><topic>genes</topic><topic>glutathione transferase</topic><topic>methylmethacrylate</topic><topic>Molecular Sequence Data</topic><topic>Peptide Mapping - methods</topic><topic>peptides</topic><topic>Peptides - chemistry</topic><topic>Polycarboxylate Cement - chemistry</topic><topic>Polymethyl Methacrylate - chemistry</topic><topic>Protein Binding</topic><topic>Protein immobilization</topic><topic>Protein Interaction Mapping - methods</topic><topic>proteins</topic><topic>Proteome analysis</topic><topic>proteomics</topic><topic>quartz</topic><topic>screening</topic><topic>trypsin</topic><topic>two-dimensional gel electrophoresis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kumada, Yoichi</creatorcontrib><creatorcontrib>Murata, Sho</creatorcontrib><creatorcontrib>Ishikawa, Yasuyuki</creatorcontrib><creatorcontrib>Nakatsuka, Kazuki</creatorcontrib><creatorcontrib>Kishimoto, Michimasa</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kumada, Yoichi</au><au>Murata, Sho</au><au>Ishikawa, Yasuyuki</au><au>Nakatsuka, Kazuki</au><au>Kishimoto, Michimasa</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Screening of PC and PMMA-binding peptides for site-specific immobilization of proteins</atitle><jtitle>Journal of biotechnology</jtitle><addtitle>J Biotechnol</addtitle><date>2012-08-31</date><risdate>2012</risdate><volume>160</volume><issue>3-4</issue><spage>222</spage><epage>228</epage><pages>222-228</pages><issn>0168-1656</issn><eissn>1873-4863</eissn><abstract>In the present study, we used proteomic research technology to develop a method for the screening and evaluation of material-binding peptides for protein immobilization. Using this screening method, soluble Escherichia coli proteins that preferentially adsorbed onto polycarbonate (PC) and poly(methylmethacrylate) (PMMA) as model plastic materials were first isolated and identified by 2-dimensional electrophoresis (2DE) combined with peptide mass fingerprinting (PMF). The genes of identified protein candidates (ELN, MLT, OMP, and BIF) that exhibited a hexahistidine tag (6×His-tag) were over-expressed by E. coli BL21 (DE3), and the proteins were purified by IMAC affinity chromatography. The candidates for PC and PMMA-binding peptides were isolated from peptide fragments from affinity protein candidates, which were digested with trypsin and chymotrypsin. Consequently, 5 candidates for the PC-binding peptide and 2 candidates for the PMMA-binding peptide were successfully identified by MALDI-TOF MS. All of the peptides identified were introduced to the C-terminus of glutathione S-transferase (GST) as a model protein for immobilization. Adsorption of peptide-fused and wild-type GSTs onto the plastic surfaces was directly monitored using a quartz crystal microbalance (QCM) device. Consequently, genetic fusion of PC-MLT8 and PC-OMP6 as PC-binders and PM-OMP25 as a PMMA-binder significantly enhanced the adsorption rates of GST, achieving an adsorption density that was more than 10 times higher than that of wild-type GST. Furthermore, the residual activity levels of GST-PC-OMP6 and GST-PM-OMP25 in the adsorption state were 2 times higher than that of wild-type GST. Thus, the PC and PMMA-binding peptides identified in this study, namely PC-OMP6 and PM-OMP25, were considerably useful for site-specific immobilization of proteins, while maintaining a higher adsorption density and residual activity levels. The method demonstrated in this study will be applicable to the isolation of a variety of material-binding peptides against the surfaces of unique materials.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>22426519</pmid><doi>10.1016/j.jbiotec.2012.02.010</doi><tpages>7</tpages></addata></record> |
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subjects | Adsorption affinity chromatography Affinity peptide tag Amino Acid Sequence Binding Sites biotechnology chymotrypsin Escherichia coli gene overexpression genes glutathione transferase methylmethacrylate Molecular Sequence Data Peptide Mapping - methods peptides Peptides - chemistry Polycarboxylate Cement - chemistry Polymethyl Methacrylate - chemistry Protein Binding Protein immobilization Protein Interaction Mapping - methods proteins Proteome analysis proteomics quartz screening trypsin two-dimensional gel electrophoresis |
title | Screening of PC and PMMA-binding peptides for site-specific immobilization of proteins |
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