Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan
The complete genome of a severe isolate of Cucumber vein yellowing virus (CVYV) from Jordan was sequenced. Comparison with the genome of a Spanish CVYV isolate inducing very mild symptoms in cucumber cultivars revealed a nucleotide identity of 94% for the complete genome and an amino acid identity o...
Gespeichert in:
| Veröffentlicht in: | Archives of virology 2012-06, Vol.157 (6), p.1189-1192 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1192 |
|---|---|
| container_issue | 6 |
| container_start_page | 1189 |
| container_title | Archives of virology |
| container_volume | 157 |
| creator | Galipienso, L. Rubio, L. Aramburu, J. Velasco, L. Janssen, D. |
| description | The complete genome of a severe isolate of Cucumber vein yellowing virus (CVYV) from Jordan was sequenced. Comparison with the genome of a Spanish CVYV isolate inducing very mild symptoms in cucumber cultivars revealed a nucleotide identity of 94% for the complete genome and an amino acid identity of 96% for the coding region. Comparison of synonymous and non-synonymous substitutions suggested a negative selection at amino acid and nucleotide levels with different degrees depending on the different coding regions. Finally, specific amino acid changes in the zinc finger domain of P1b and in the P1-P3 proteolytic site were found which could be involved in the virulence of CVYV. |
| doi_str_mv | 10.1007/s00705-012-1264-4 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1020854464</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2673848771</sourcerecordid><originalsourceid>FETCH-LOGICAL-c435t-93ec8242af25af08ec22ee5df306a2a46e2513b174e359c39c256340006982a93</originalsourceid><addsrcrecordid>eNqNkV2r1DAQhoMo7p7VH-CNBEQ4N9XJV5teyqLnKAve6KWUbDpdurTJmjQr--9N7fqBIHiTkMkz77zDS8gzBq8YQPU65gNUAYwXjJeykA_ImknBC13V-iFZgwBZ6BL0itzEeATIBaEekxXnQgtQ1Zp82frxNOCE1CU7oJ_6FmnErwmdReo7avLrjAFpH_1gph81m2wa9xjoGXtHLzgM_lvvDvTchxRpF_xIP_jQGveEPOrMEPHp9d6Qz-_eftreF7uPd--3b3aFlUJNRS3Qai656bgyHWi0nCOqthNQGm5kiVwxsWeVRKFqK2rLVSlk3qesNTe12JDbRfcUfLYep2bso82-jEOfYsOAg1ZSlvI_UKaFzPKQ0Rd_oUefgsuLzFRVzdQsyBbKBh9jwK45hX404ZKhZo6pWWJqckzNHFMz9zy_Kqf9iO2vjp-5ZODlFTDRmqELxtk-_uZUrVkFs0W-cDF_uQOGPy3-a_p3vtGoGw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1017745634</pqid></control><display><type>article</type><title>Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan</title><source>MEDLINE</source><source>Springer Nature - Complete Springer Journals</source><creator>Galipienso, L. ; Rubio, L. ; Aramburu, J. ; Velasco, L. ; Janssen, D.</creator><creatorcontrib>Galipienso, L. ; Rubio, L. ; Aramburu, J. ; Velasco, L. ; Janssen, D.</creatorcontrib><description>The complete genome of a severe isolate of Cucumber vein yellowing virus (CVYV) from Jordan was sequenced. Comparison with the genome of a Spanish CVYV isolate inducing very mild symptoms in cucumber cultivars revealed a nucleotide identity of 94% for the complete genome and an amino acid identity of 96% for the coding region. Comparison of synonymous and non-synonymous substitutions suggested a negative selection at amino acid and nucleotide levels with different degrees depending on the different coding regions. Finally, specific amino acid changes in the zinc finger domain of P1b and in the P1-P3 proteolytic site were found which could be involved in the virulence of CVYV.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-012-1264-4</identifier><identifier>PMID: 22383057</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Amino acids ; Annotated Sequence Record ; Base Sequence ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Cucumber vein yellowing virus ; Cucumis sativus - virology ; Fundamental and applied biological sciences. Psychology ; Genome, Viral ; Genomes ; Infectious Diseases ; Jordan ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Mutation ; Phylogeny ; Phytopathology. Animal pests. Plant and forest protection ; Plant Diseases - virology ; Plant viruses and viroids ; Potyviridae - classification ; Potyviridae - genetics ; Potyviridae - isolation & purification ; Proteins ; Quarantine ; Virology</subject><ispartof>Archives of virology, 2012-06, Vol.157 (6), p.1189-1192</ispartof><rights>Springer-Verlag 2012</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c435t-93ec8242af25af08ec22ee5df306a2a46e2513b174e359c39c256340006982a93</citedby><cites>FETCH-LOGICAL-c435t-93ec8242af25af08ec22ee5df306a2a46e2513b174e359c39c256340006982a93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-012-1264-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-012-1264-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25981700$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22383057$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Galipienso, L.</creatorcontrib><creatorcontrib>Rubio, L.</creatorcontrib><creatorcontrib>Aramburu, J.</creatorcontrib><creatorcontrib>Velasco, L.</creatorcontrib><creatorcontrib>Janssen, D.</creatorcontrib><title>Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>The complete genome of a severe isolate of Cucumber vein yellowing virus (CVYV) from Jordan was sequenced. Comparison with the genome of a Spanish CVYV isolate inducing very mild symptoms in cucumber cultivars revealed a nucleotide identity of 94% for the complete genome and an amino acid identity of 96% for the coding region. Comparison of synonymous and non-synonymous substitutions suggested a negative selection at amino acid and nucleotide levels with different degrees depending on the different coding regions. Finally, specific amino acid changes in the zinc finger domain of P1b and in the P1-P3 proteolytic site were found which could be involved in the virulence of CVYV.</description><subject>Amino acids</subject><subject>Annotated Sequence Record</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cucumber vein yellowing virus</subject><subject>Cucumis sativus - virology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Jordan</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Phylogeny</subject><subject>Phytopathology. Animal pests. Plant and forest protection</subject><subject>Plant Diseases - virology</subject><subject>Plant viruses and viroids</subject><subject>Potyviridae - classification</subject><subject>Potyviridae - genetics</subject><subject>Potyviridae - isolation & purification</subject><subject>Proteins</subject><subject>Quarantine</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkV2r1DAQhoMo7p7VH-CNBEQ4N9XJV5teyqLnKAve6KWUbDpdurTJmjQr--9N7fqBIHiTkMkz77zDS8gzBq8YQPU65gNUAYwXjJeykA_ImknBC13V-iFZgwBZ6BL0itzEeATIBaEekxXnQgtQ1Zp82frxNOCE1CU7oJ_6FmnErwmdReo7avLrjAFpH_1gph81m2wa9xjoGXtHLzgM_lvvDvTchxRpF_xIP_jQGveEPOrMEPHp9d6Qz-_eftreF7uPd--3b3aFlUJNRS3Qai656bgyHWi0nCOqthNQGm5kiVwxsWeVRKFqK2rLVSlk3qesNTe12JDbRfcUfLYep2bso82-jEOfYsOAg1ZSlvI_UKaFzPKQ0Rd_oUefgsuLzFRVzdQsyBbKBh9jwK45hX404ZKhZo6pWWJqckzNHFMz9zy_Kqf9iO2vjp-5ZODlFTDRmqELxtk-_uZUrVkFs0W-cDF_uQOGPy3-a_p3vtGoGw</recordid><startdate>20120601</startdate><enddate>20120601</enddate><creator>Galipienso, L.</creator><creator>Rubio, L.</creator><creator>Aramburu, J.</creator><creator>Velasco, L.</creator><creator>Janssen, D.</creator><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20120601</creationdate><title>Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan</title><author>Galipienso, L. ; Rubio, L. ; Aramburu, J. ; Velasco, L. ; Janssen, D.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c435t-93ec8242af25af08ec22ee5df306a2a46e2513b174e359c39c256340006982a93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Amino acids</topic><topic>Annotated Sequence Record</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cucumber vein yellowing virus</topic><topic>Cucumis sativus - virology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Jordan</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Phylogeny</topic><topic>Phytopathology. Animal pests. Plant and forest protection</topic><topic>Plant Diseases - virology</topic><topic>Plant viruses and viroids</topic><topic>Potyviridae - classification</topic><topic>Potyviridae - genetics</topic><topic>Potyviridae - isolation & purification</topic><topic>Proteins</topic><topic>Quarantine</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Galipienso, L.</creatorcontrib><creatorcontrib>Rubio, L.</creatorcontrib><creatorcontrib>Aramburu, J.</creatorcontrib><creatorcontrib>Velasco, L.</creatorcontrib><creatorcontrib>Janssen, D.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Galipienso, L.</au><au>Rubio, L.</au><au>Aramburu, J.</au><au>Velasco, L.</au><au>Janssen, D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2012-06-01</date><risdate>2012</risdate><volume>157</volume><issue>6</issue><spage>1189</spage><epage>1192</epage><pages>1189-1192</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The complete genome of a severe isolate of Cucumber vein yellowing virus (CVYV) from Jordan was sequenced. Comparison with the genome of a Spanish CVYV isolate inducing very mild symptoms in cucumber cultivars revealed a nucleotide identity of 94% for the complete genome and an amino acid identity of 96% for the coding region. Comparison of synonymous and non-synonymous substitutions suggested a negative selection at amino acid and nucleotide levels with different degrees depending on the different coding regions. Finally, specific amino acid changes in the zinc finger domain of P1b and in the P1-P3 proteolytic site were found which could be involved in the virulence of CVYV.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>22383057</pmid><doi>10.1007/s00705-012-1264-4</doi><tpages>4</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2012-06, Vol.157 (6), p.1189-1192 |
| issn | 0304-8608 1432-8798 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1020854464 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Amino acids Annotated Sequence Record Base Sequence Biological and medical sciences Biomedical and Life Sciences Biomedicine Cucumber vein yellowing virus Cucumis sativus - virology Fundamental and applied biological sciences. Psychology Genome, Viral Genomes Infectious Diseases Jordan Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Mutation Phylogeny Phytopathology. Animal pests. Plant and forest protection Plant Diseases - virology Plant viruses and viroids Potyviridae - classification Potyviridae - genetics Potyviridae - isolation & purification Proteins Quarantine Virology |
| title | Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-01T00%3A43%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Complete%20nucleotide%20sequence%20of%20a%20severe%20isolate%20of%20cucumber%20vein%20yellowing%20virus%20from%20Jordan&rft.jtitle=Archives%20of%20virology&rft.au=Galipienso,%20L.&rft.date=2012-06-01&rft.volume=157&rft.issue=6&rft.spage=1189&rft.epage=1192&rft.pages=1189-1192&rft.issn=0304-8608&rft.eissn=1432-8798&rft_id=info:doi/10.1007/s00705-012-1264-4&rft_dat=%3Cproquest_cross%3E2673848771%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1017745634&rft_id=info:pmid/22383057&rfr_iscdi=true |