Erythrobacter pelagi sp. nov., a member of the family Erythrobacteraceae isolated from the Red Sea
A novel Gram-negative, aerobic, catalase- and oxidase-positive, non-sporulating, non-motile, rod-shaped bacterium, designated strain UST081027-248T, was isolated from seawater of the Red Sea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain UST081027-248T fell within the gen...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2012-06, Vol.62 (Pt 6), p.1348-1353 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Wu, Hui-xian Lai, Pok Yui Lee, On On Zhou, Xiao-jian Miao, Li Wang, Hao Qian, Pei-Yuan |
| description | A novel Gram-negative, aerobic, catalase- and oxidase-positive, non-sporulating, non-motile, rod-shaped bacterium, designated strain UST081027-248T, was isolated from seawater of the Red Sea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain UST081027-248T fell within the genus Erythrobacter. Levels of 16S rRNA gene sequence similarity between the novel strain and the type strains of Erythrobacter species ranged from 95.3 % (with Erythrobacter gangjinensis) to 98.2 % (with Erythrobacter citreus). However, levels of DNA–DNA relatedness between strain UST081027-248T and the type strains of closely related species were below 70 %. Optimal growth of the isolate occurred in the presence of 2.0 % NaCl, at pH 8.0–9.0 and at 28–36 °C. The isolate did not produce bacteriochlorophyll a. The predominant cellular fatty acids were C17 : 1ω6c, summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c) and C15 : 0 2-OH. The genomic DNA G+C content of strain UST081027-248T was 60.4 mol%. Phenotypic properties and phylogenetic distinctiveness clearly indicated that strain UST081027-248T represents a novel species of the genus Erythrobacter, for which the name Erythrobacter pelagi sp. nov. is proposed. The type strain is UST081027-248T ( = JCM 17468T = NRRL 59511T). |
| doi_str_mv | 10.1099/ijs.0.029561-0 |
| format | Article |
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Phylogenetic analysis based on 16S rRNA gene sequences showed that strain UST081027-248T fell within the genus Erythrobacter. Levels of 16S rRNA gene sequence similarity between the novel strain and the type strains of Erythrobacter species ranged from 95.3 % (with Erythrobacter gangjinensis) to 98.2 % (with Erythrobacter citreus). However, levels of DNA–DNA relatedness between strain UST081027-248T and the type strains of closely related species were below 70 %. Optimal growth of the isolate occurred in the presence of 2.0 % NaCl, at pH 8.0–9.0 and at 28–36 °C. The isolate did not produce bacteriochlorophyll a. The predominant cellular fatty acids were C17 : 1ω6c, summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c) and C15 : 0 2-OH. The genomic DNA G+C content of strain UST081027-248T was 60.4 mol%. Phenotypic properties and phylogenetic distinctiveness clearly indicated that strain UST081027-248T represents a novel species of the genus Erythrobacter, for which the name Erythrobacter pelagi sp. nov. is proposed. The type strain is UST081027-248T ( = JCM 17468T = NRRL 59511T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.029561-0</identifier><identifier>PMID: 21828015</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>bacteria ; Bacteriology ; Base Composition ; Biological and medical sciences ; DNA ; DNA, Bacterial - genetics ; Erythrobacter citreus ; fatty acids ; Fundamental and applied biological sciences. Psychology ; Indian Ocean ; Microbiology ; Molecular Sequence Data ; new species ; nucleotide sequences ; Phylogeny ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; seawater ; Seawater - microbiology ; sequence homology ; sodium chloride ; Sphingomonadaceae - classification ; Sphingomonadaceae - genetics ; Sphingomonadaceae - isolation & purification ; Sphingomonadaceae - metabolism ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-06, Vol.62 (Pt 6), p.1348-1353</ispartof><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c389t-a7f880736d295fb276a6d4c3c30294a2812c84f30226f3ae36e89c623cc76c0c3</citedby><cites>FETCH-LOGICAL-c389t-a7f880736d295fb276a6d4c3c30294a2812c84f30226f3ae36e89c623cc76c0c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26002398$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21828015$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wu, Hui-xian</creatorcontrib><creatorcontrib>Lai, Pok Yui</creatorcontrib><creatorcontrib>Lee, On On</creatorcontrib><creatorcontrib>Zhou, Xiao-jian</creatorcontrib><creatorcontrib>Miao, Li</creatorcontrib><creatorcontrib>Wang, Hao</creatorcontrib><creatorcontrib>Qian, Pei-Yuan</creatorcontrib><title>Erythrobacter pelagi sp. nov., a member of the family Erythrobacteraceae isolated from the Red Sea</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A novel Gram-negative, aerobic, catalase- and oxidase-positive, non-sporulating, non-motile, rod-shaped bacterium, designated strain UST081027-248T, was isolated from seawater of the Red Sea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain UST081027-248T fell within the genus Erythrobacter. Levels of 16S rRNA gene sequence similarity between the novel strain and the type strains of Erythrobacter species ranged from 95.3 % (with Erythrobacter gangjinensis) to 98.2 % (with Erythrobacter citreus). However, levels of DNA–DNA relatedness between strain UST081027-248T and the type strains of closely related species were below 70 %. Optimal growth of the isolate occurred in the presence of 2.0 % NaCl, at pH 8.0–9.0 and at 28–36 °C. The isolate did not produce bacteriochlorophyll a. The predominant cellular fatty acids were C17 : 1ω6c, summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c) and C15 : 0 2-OH. The genomic DNA G+C content of strain UST081027-248T was 60.4 mol%. Phenotypic properties and phylogenetic distinctiveness clearly indicated that strain UST081027-248T represents a novel species of the genus Erythrobacter, for which the name Erythrobacter pelagi sp. nov. is proposed. The type strain is UST081027-248T ( = JCM 17468T = NRRL 59511T).</description><subject>bacteria</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Erythrobacter citreus</subject><subject>fatty acids</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Indian Ocean</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>seawater</subject><subject>Seawater - microbiology</subject><subject>sequence homology</subject><subject>sodium chloride</subject><subject>Sphingomonadaceae - classification</subject><subject>Sphingomonadaceae - genetics</subject><subject>Sphingomonadaceae - isolation & purification</subject><subject>Sphingomonadaceae - metabolism</subject><subject>Systematics</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkctLAzEQh4MoVqtXj5qL4MFd89hNs0cp9QEFwdpzmE2TdstuU5Ot0P_e1K2vUzKTb34wXxC6oCSlpCjuqmVISUpYkQuakAN0QjMhkpzw7PDPvYdOQ1gSEhuEHKMeo5JJQvMTVI78tl14V4JujcdrU8O8wmGd4pX7SG8x4MY0ZXxxFrcLgy00Vb3F_6ZAGzC4Cq6G1syw9a75Yl9jMTFwho4s1MGc788-mj6M3oZPyfjl8Xl4P040l0WbwMBKSQZczOIytmQDAWKWaa553C4DJinTMrOxYsJyMFwYWWjBuNYDoYnmfXTT5a69e9-Y0KqmCtrUNayM2wRFCZWC5yynEU07VHsXgjdWrX3VgN9GSO28quhVEdV5VSQOXO6zN2VjZj_4t8gIXO8BCBpq62Glq_DLRe-MFzJyVx1nwSmY-8hMJywm7D4nLzLBPwEIn4iX</recordid><startdate>20120601</startdate><enddate>20120601</enddate><creator>Wu, Hui-xian</creator><creator>Lai, Pok Yui</creator><creator>Lee, On On</creator><creator>Zhou, Xiao-jian</creator><creator>Miao, Li</creator><creator>Wang, Hao</creator><creator>Qian, Pei-Yuan</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120601</creationdate><title>Erythrobacter pelagi sp. nov., a member of the family Erythrobacteraceae isolated from the Red Sea</title><author>Wu, Hui-xian ; Lai, Pok Yui ; Lee, On On ; Zhou, Xiao-jian ; Miao, Li ; Wang, Hao ; Qian, Pei-Yuan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c389t-a7f880736d295fb276a6d4c3c30294a2812c84f30226f3ae36e89c623cc76c0c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>bacteria</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>Erythrobacter citreus</topic><topic>fatty acids</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Indian Ocean</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>seawater</topic><topic>Seawater - microbiology</topic><topic>sequence homology</topic><topic>sodium chloride</topic><topic>Sphingomonadaceae - classification</topic><topic>Sphingomonadaceae - genetics</topic><topic>Sphingomonadaceae - isolation & purification</topic><topic>Sphingomonadaceae - metabolism</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Hui-xian</creatorcontrib><creatorcontrib>Lai, Pok Yui</creatorcontrib><creatorcontrib>Lee, On On</creatorcontrib><creatorcontrib>Zhou, Xiao-jian</creatorcontrib><creatorcontrib>Miao, Li</creatorcontrib><creatorcontrib>Wang, Hao</creatorcontrib><creatorcontrib>Qian, Pei-Yuan</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Hui-xian</au><au>Lai, Pok Yui</au><au>Lee, On On</au><au>Zhou, Xiao-jian</au><au>Miao, Li</au><au>Wang, Hao</au><au>Qian, Pei-Yuan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Erythrobacter pelagi sp. nov., a member of the family Erythrobacteraceae isolated from the Red Sea</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-06-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 6</issue><spage>1348</spage><epage>1353</epage><pages>1348-1353</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A novel Gram-negative, aerobic, catalase- and oxidase-positive, non-sporulating, non-motile, rod-shaped bacterium, designated strain UST081027-248T, was isolated from seawater of the Red Sea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain UST081027-248T fell within the genus Erythrobacter. Levels of 16S rRNA gene sequence similarity between the novel strain and the type strains of Erythrobacter species ranged from 95.3 % (with Erythrobacter gangjinensis) to 98.2 % (with Erythrobacter citreus). However, levels of DNA–DNA relatedness between strain UST081027-248T and the type strains of closely related species were below 70 %. Optimal growth of the isolate occurred in the presence of 2.0 % NaCl, at pH 8.0–9.0 and at 28–36 °C. The isolate did not produce bacteriochlorophyll a. The predominant cellular fatty acids were C17 : 1ω6c, summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c) and C15 : 0 2-OH. The genomic DNA G+C content of strain UST081027-248T was 60.4 mol%. Phenotypic properties and phylogenetic distinctiveness clearly indicated that strain UST081027-248T represents a novel species of the genus Erythrobacter, for which the name Erythrobacter pelagi sp. nov. is proposed. The type strain is UST081027-248T ( = JCM 17468T = NRRL 59511T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>21828015</pmid><doi>10.1099/ijs.0.029561-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | bacteria Bacteriology Base Composition Biological and medical sciences DNA DNA, Bacterial - genetics Erythrobacter citreus fatty acids Fundamental and applied biological sciences. Psychology Indian Ocean Microbiology Molecular Sequence Data new species nucleotide sequences Phylogeny ribosomal RNA RNA, Ribosomal, 16S - genetics seawater Seawater - microbiology sequence homology sodium chloride Sphingomonadaceae - classification Sphingomonadaceae - genetics Sphingomonadaceae - isolation & purification Sphingomonadaceae - metabolism Systematics |
| title | Erythrobacter pelagi sp. nov., a member of the family Erythrobacteraceae isolated from the Red Sea |
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