Molecular characterization of distinct bipartite begomovirus infecting bhendi (Abelmoschus esculentus L.) in India
Yellow vein mosaic disease of okra is a whitefly transmitted begomovirus causing heavy economic loss in different parts of India. The okra isolate (OY131) of this virus from a bhendi plant [(Abelmoschus esculentus L.) Moench] showing yellow vein mosaic, vein twisting, reduced leaves, and a bushy app...
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| Veröffentlicht in: | Virus genes 2012-06, Vol.44 (3), p.522-535 |
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| creator | Venkataravanappa, V Lakshminarayana Reddy, C. N Jalali, Salil Krishna Reddy, M |
| description | Yellow vein mosaic disease of okra is a whitefly transmitted begomovirus causing heavy economic loss in different parts of India. The okra isolate (OY131) of this virus from a bhendi plant [(Abelmoschus esculentus L.) Moench] showing yellow vein mosaic, vein twisting, reduced leaves, and a bushy appearance in the Palem region, New Delhi, India, was characterized in the present study. The complete DNA-A and DNA-B sequences have been determined and are comprised of 2,746 and 2,703 nucleotides, respectively. The betasatellite (DNA-β) component was absent in the sample. The genome organization was typically of biparite begomoviruses, which were characterized earlier. Comparison of DNA-A component with other known begomoviruses suggest that this virus, being only distantly related ( |
| doi_str_mv | 10.1007/s11262-012-0732-y |
| format | Article |
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N ; Jalali, Salil ; Krishna Reddy, M</creator><creatorcontrib>Venkataravanappa, V ; Lakshminarayana Reddy, C. N ; Jalali, Salil ; Krishna Reddy, M</creatorcontrib><description>Yellow vein mosaic disease of okra is a whitefly transmitted begomovirus causing heavy economic loss in different parts of India. The okra isolate (OY131) of this virus from a bhendi plant [(Abelmoschus esculentus L.) Moench] showing yellow vein mosaic, vein twisting, reduced leaves, and a bushy appearance in the Palem region, New Delhi, India, was characterized in the present study. The complete DNA-A and DNA-B sequences have been determined and are comprised of 2,746 and 2,703 nucleotides, respectively. The betasatellite (DNA-β) component was absent in the sample. The genome organization was typically of biparite begomoviruses, which were characterized earlier. Comparison of DNA-A component with other known begomoviruses suggest that this virus, being only distantly related (<85.9% similarity with its nearest relative, BYVMV) to other known begomoviruses, is a new species. We have tentatively assigned the genome to a novel geminivirus species Bhendi yellow vein mosaic Delhi virus [BYVDV-IN (India: Delhi: okra)]. DNA-B showed highest sequence identity (87.8% identical) to that of a ToLCNDV (AY158080). The phylogenetic analysis of the present isolate is distinct from all other viruses; however clusters with ToLCNDV group infect different crops. The recombination analysis revealed that this isolate has sequences originated from ToLCNDV. This is the first known bhendi yellow vein mosaic disease associated bipartite begomovirus from India.</description><identifier>ISSN: 0920-8569</identifier><identifier>EISSN: 1572-994X</identifier><identifier>DOI: 10.1007/s11262-012-0732-y</identifier><identifier>PMID: 22447131</identifier><language>eng</language><publisher>Boston: Springer-Verlag</publisher><subject>Abelmoschus - virology ; Abelmoschus esculentus ; Aleyrodidae ; Begomovirus ; Begomovirus - classification ; Begomovirus - genetics ; Begomovirus - isolation & purification ; Biomedical and Life Sciences ; Biomedicine ; Cluster Analysis ; Crops ; DNA, Viral - chemistry ; DNA, Viral - genetics ; Economics ; Geminivirus ; genome ; Genome, Viral ; Genomes ; Genotype ; India ; Leaves ; Medical Microbiology ; Molecular Sequence Data ; Mosaic disease ; Mosaics ; New species ; nucleotides ; okra ; Phylogeny ; Plant Diseases - virology ; Plant Sciences ; Plant viruses ; Recombination ; sequence analysis ; Sequence Analysis, DNA ; Veins ; Virology ; viruses</subject><ispartof>Virus genes, 2012-06, Vol.44 (3), p.522-535</ispartof><rights>Springer Science+Business Media, LLC 2012</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c453t-675c4acaa0b895bd0d0dc5152d57235b1d27756751a961ef5a3cbbe82b17af643</citedby><cites>FETCH-LOGICAL-c453t-675c4acaa0b895bd0d0dc5152d57235b1d27756751a961ef5a3cbbe82b17af643</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11262-012-0732-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11262-012-0732-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22447131$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Venkataravanappa, V</creatorcontrib><creatorcontrib>Lakshminarayana Reddy, C. N</creatorcontrib><creatorcontrib>Jalali, Salil</creatorcontrib><creatorcontrib>Krishna Reddy, M</creatorcontrib><title>Molecular characterization of distinct bipartite begomovirus infecting bhendi (Abelmoschus esculentus L.) in India</title><title>Virus genes</title><addtitle>Virus Genes</addtitle><addtitle>Virus Genes</addtitle><description>Yellow vein mosaic disease of okra is a whitefly transmitted begomovirus causing heavy economic loss in different parts of India. The okra isolate (OY131) of this virus from a bhendi plant [(Abelmoschus esculentus L.) Moench] showing yellow vein mosaic, vein twisting, reduced leaves, and a bushy appearance in the Palem region, New Delhi, India, was characterized in the present study. The complete DNA-A and DNA-B sequences have been determined and are comprised of 2,746 and 2,703 nucleotides, respectively. The betasatellite (DNA-β) component was absent in the sample. The genome organization was typically of biparite begomoviruses, which were characterized earlier. Comparison of DNA-A component with other known begomoviruses suggest that this virus, being only distantly related (<85.9% similarity with its nearest relative, BYVMV) to other known begomoviruses, is a new species. We have tentatively assigned the genome to a novel geminivirus species Bhendi yellow vein mosaic Delhi virus [BYVDV-IN (India: Delhi: okra)]. DNA-B showed highest sequence identity (87.8% identical) to that of a ToLCNDV (AY158080). The phylogenetic analysis of the present isolate is distinct from all other viruses; however clusters with ToLCNDV group infect different crops. The recombination analysis revealed that this isolate has sequences originated from ToLCNDV. This is the first known bhendi yellow vein mosaic disease associated bipartite begomovirus from India.</description><subject>Abelmoschus - virology</subject><subject>Abelmoschus esculentus</subject><subject>Aleyrodidae</subject><subject>Begomovirus</subject><subject>Begomovirus - classification</subject><subject>Begomovirus - genetics</subject><subject>Begomovirus - isolation & purification</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cluster Analysis</subject><subject>Crops</subject><subject>DNA, Viral - chemistry</subject><subject>DNA, Viral - genetics</subject><subject>Economics</subject><subject>Geminivirus</subject><subject>genome</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Genotype</subject><subject>India</subject><subject>Leaves</subject><subject>Medical Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Mosaic disease</subject><subject>Mosaics</subject><subject>New species</subject><subject>nucleotides</subject><subject>okra</subject><subject>Phylogeny</subject><subject>Plant Diseases - virology</subject><subject>Plant Sciences</subject><subject>Plant viruses</subject><subject>Recombination</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Veins</subject><subject>Virology</subject><subject>viruses</subject><issn>0920-8569</issn><issn>1572-994X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkl9rFDEUxYModq1-AF90wJf6MDV_J5PHUqwWVvpQC76FJJPZTZmZrEmmsH763mWqSKEiISRwf-fcXE4QekvwKcFYfsqE0IbWmMCWjNb7Z2hFhKS1UvzHc7TCiuK6FY06Qq9yvsUYty3lL9ERpZxLwsgKpW9x8G4eTKrc1iTjik_hlykhTlXsqy7kEiZXKht2JpVQfGX9Jo7xLqQ5V2HqvQNgU9mtn7pQnZxZP4wxuy1UfQZjPxW4rk8_AlxdAmNeoxe9GbJ_83Aeo5uLz9_Pv9brqy-X52fr2nHBSt1I4bhxxmDbKmE7DMsJImgHEzJhSUelFEARoxrie2GYs9a31BJp-oazY3Sy-O5S_Dn7XPQYsvPDYCYf56wJJlK1TAn1PyjmquGUAvrhEXob5zTBIAeKcQ6vkkCRhXIp5px8r3cpjCbtAdKH7PSSnYbs9CE7vQfNuwfn2Y6--6P4HRYAdAEylKaNT3-3ftr1_SLqTdRmk0LWN9cUEw6_gWPV4n8SlEpO2D2RB7c9</recordid><startdate>20120601</startdate><enddate>20120601</enddate><creator>Venkataravanappa, V</creator><creator>Lakshminarayana Reddy, C. 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N</au><au>Jalali, Salil</au><au>Krishna Reddy, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular characterization of distinct bipartite begomovirus infecting bhendi (Abelmoschus esculentus L.) in India</atitle><jtitle>Virus genes</jtitle><stitle>Virus Genes</stitle><addtitle>Virus Genes</addtitle><date>2012-06-01</date><risdate>2012</risdate><volume>44</volume><issue>3</issue><spage>522</spage><epage>535</epage><pages>522-535</pages><issn>0920-8569</issn><eissn>1572-994X</eissn><abstract>Yellow vein mosaic disease of okra is a whitefly transmitted begomovirus causing heavy economic loss in different parts of India. The okra isolate (OY131) of this virus from a bhendi plant [(Abelmoschus esculentus L.) Moench] showing yellow vein mosaic, vein twisting, reduced leaves, and a bushy appearance in the Palem region, New Delhi, India, was characterized in the present study. The complete DNA-A and DNA-B sequences have been determined and are comprised of 2,746 and 2,703 nucleotides, respectively. The betasatellite (DNA-β) component was absent in the sample. The genome organization was typically of biparite begomoviruses, which were characterized earlier. Comparison of DNA-A component with other known begomoviruses suggest that this virus, being only distantly related (<85.9% similarity with its nearest relative, BYVMV) to other known begomoviruses, is a new species. We have tentatively assigned the genome to a novel geminivirus species Bhendi yellow vein mosaic Delhi virus [BYVDV-IN (India: Delhi: okra)]. DNA-B showed highest sequence identity (87.8% identical) to that of a ToLCNDV (AY158080). The phylogenetic analysis of the present isolate is distinct from all other viruses; however clusters with ToLCNDV group infect different crops. The recombination analysis revealed that this isolate has sequences originated from ToLCNDV. This is the first known bhendi yellow vein mosaic disease associated bipartite begomovirus from India.</abstract><cop>Boston</cop><pub>Springer-Verlag</pub><pmid>22447131</pmid><doi>10.1007/s11262-012-0732-y</doi><tpages>14</tpages></addata></record> |
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| subjects | Abelmoschus - virology Abelmoschus esculentus Aleyrodidae Begomovirus Begomovirus - classification Begomovirus - genetics Begomovirus - isolation & purification Biomedical and Life Sciences Biomedicine Cluster Analysis Crops DNA, Viral - chemistry DNA, Viral - genetics Economics Geminivirus genome Genome, Viral Genomes Genotype India Leaves Medical Microbiology Molecular Sequence Data Mosaic disease Mosaics New species nucleotides okra Phylogeny Plant Diseases - virology Plant Sciences Plant viruses Recombination sequence analysis Sequence Analysis, DNA Veins Virology viruses |
| title | Molecular characterization of distinct bipartite begomovirus infecting bhendi (Abelmoschus esculentus L.) in India |
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