Engineering synthetic recursive pathways to generate non-natural small molecules
Recursive pathways are broadly defined as those that catalyze a series of reactions such that the key, bond-forming functional group of the substrate is always regenerated in each cycle, allowing for a new cycle of reactions to begin. Recursive carbon-chain elongation pathways in nature produce fatt...
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Veröffentlicht in: | Nature chemical biology 2012-05, Vol.8 (6), p.518-526 |
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description | Recursive pathways are broadly defined as those that catalyze a series of reactions such that the key, bond-forming functional group of the substrate is always regenerated in each cycle, allowing for a new cycle of reactions to begin. Recursive carbon-chain elongation pathways in nature produce fatty acids, polyketides, isoprenoids and α-keto acids (αKAs), which all use modular or iterative approaches for chain elongation. Recently, an artificial pathway for αKA elongation has been built that uses an engineered isopropylmalate synthase to recursively condense acetyl-CoA with αKAs. This synthetic approach expands the possibilities for recursive pathways beyond the modular or iterative synthesis of natural products and serves as a case study for understanding the challenges of building recursive pathways from nonrecursive enzymes. There exists the potential to design synthetic recursive pathways far beyond what nature has evolved. |
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Recursive carbon-chain elongation pathways in nature produce fatty acids, polyketides, isoprenoids and α-keto acids (αKAs), which all use modular or iterative approaches for chain elongation. Recently, an artificial pathway for αKA elongation has been built that uses an engineered isopropylmalate synthase to recursively condense acetyl-CoA with αKAs. This synthetic approach expands the possibilities for recursive pathways beyond the modular or iterative synthesis of natural products and serves as a case study for understanding the challenges of building recursive pathways from nonrecursive enzymes. There exists the potential to design synthetic recursive pathways far beyond what nature has evolved.</description><identifier>ISSN: 1552-4450</identifier><identifier>EISSN: 1552-4469</identifier><identifier>DOI: 10.1038/nchembio.959</identifier><identifier>PMID: 22596203</identifier><language>eng</language><publisher>New York: Nature Publishing Group US</publisher><subject>2-Isopropylmalate Synthase - chemistry ; 2-Isopropylmalate Synthase - genetics ; 631/92/552 ; 631/92/60 ; 631/92/613 ; Acetyl Coenzyme A - chemistry ; Binding Sites ; Biochemical Engineering ; Biochemistry ; Bioorganic Chemistry ; Biosynthesis ; Carbon ; Carbon Cycle ; Case studies ; Catalysis ; Cell Biology ; Chemistry ; Chemistry and Materials Science ; Chemistry/Food Science ; Engineering ; Enzymes ; Fatty acids ; Keto Acids - chemistry ; Metabolism ; Models, Molecular ; Molecular Structure ; Natural products ; Polymerization ; Protein Engineering - methods ; review-article ; Small Molecule Libraries - chemical synthesis ; Small Molecule Libraries - chemistry ; Substrate Specificity ; Synthetic Biology - methods</subject><ispartof>Nature chemical biology, 2012-05, Vol.8 (6), p.518-526</ispartof><rights>Springer Nature America, Inc. 2012</rights><rights>Copyright Nature Publishing Group Jun 2012</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c357t-f9917b32a052bb6012541b4d83d92d8543c5b6c39e124d7374b0bc84f7fea6a83</citedby><cites>FETCH-LOGICAL-c357t-f9917b32a052bb6012541b4d83d92d8543c5b6c39e124d7374b0bc84f7fea6a83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22596203$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Felnagle, Elizabeth A</creatorcontrib><creatorcontrib>Chaubey, Asha</creatorcontrib><creatorcontrib>Noey, Elizabeth L</creatorcontrib><creatorcontrib>Houk, Kendall N</creatorcontrib><creatorcontrib>Liao, James C</creatorcontrib><title>Engineering synthetic recursive pathways to generate non-natural small molecules</title><title>Nature chemical biology</title><addtitle>Nat Chem Biol</addtitle><addtitle>Nat Chem Biol</addtitle><description>Recursive pathways are broadly defined as those that catalyze a series of reactions such that the key, bond-forming functional group of the substrate is always regenerated in each cycle, allowing for a new cycle of reactions to begin. Recursive carbon-chain elongation pathways in nature produce fatty acids, polyketides, isoprenoids and α-keto acids (αKAs), which all use modular or iterative approaches for chain elongation. Recently, an artificial pathway for αKA elongation has been built that uses an engineered isopropylmalate synthase to recursively condense acetyl-CoA with αKAs. This synthetic approach expands the possibilities for recursive pathways beyond the modular or iterative synthesis of natural products and serves as a case study for understanding the challenges of building recursive pathways from nonrecursive enzymes. There exists the potential to design synthetic recursive pathways far beyond what nature has evolved.</description><subject>2-Isopropylmalate Synthase - chemistry</subject><subject>2-Isopropylmalate Synthase - genetics</subject><subject>631/92/552</subject><subject>631/92/60</subject><subject>631/92/613</subject><subject>Acetyl Coenzyme A - chemistry</subject><subject>Binding Sites</subject><subject>Biochemical Engineering</subject><subject>Biochemistry</subject><subject>Bioorganic Chemistry</subject><subject>Biosynthesis</subject><subject>Carbon</subject><subject>Carbon Cycle</subject><subject>Case studies</subject><subject>Catalysis</subject><subject>Cell Biology</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Chemistry/Food Science</subject><subject>Engineering</subject><subject>Enzymes</subject><subject>Fatty acids</subject><subject>Keto Acids - chemistry</subject><subject>Metabolism</subject><subject>Models, Molecular</subject><subject>Molecular Structure</subject><subject>Natural products</subject><subject>Polymerization</subject><subject>Protein Engineering - 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Academic</collection><jtitle>Nature chemical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Felnagle, Elizabeth A</au><au>Chaubey, Asha</au><au>Noey, Elizabeth L</au><au>Houk, Kendall N</au><au>Liao, James C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Engineering synthetic recursive pathways to generate non-natural small molecules</atitle><jtitle>Nature chemical biology</jtitle><stitle>Nat Chem Biol</stitle><addtitle>Nat Chem Biol</addtitle><date>2012-05-17</date><risdate>2012</risdate><volume>8</volume><issue>6</issue><spage>518</spage><epage>526</epage><pages>518-526</pages><issn>1552-4450</issn><eissn>1552-4469</eissn><abstract>Recursive pathways are broadly defined as those that catalyze a series of reactions such that the key, bond-forming functional group of the substrate is always regenerated in each cycle, allowing for a new cycle of reactions to begin. Recursive carbon-chain elongation pathways in nature produce fatty acids, polyketides, isoprenoids and α-keto acids (αKAs), which all use modular or iterative approaches for chain elongation. Recently, an artificial pathway for αKA elongation has been built that uses an engineered isopropylmalate synthase to recursively condense acetyl-CoA with αKAs. This synthetic approach expands the possibilities for recursive pathways beyond the modular or iterative synthesis of natural products and serves as a case study for understanding the challenges of building recursive pathways from nonrecursive enzymes. There exists the potential to design synthetic recursive pathways far beyond what nature has evolved.</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>22596203</pmid><doi>10.1038/nchembio.959</doi><tpages>9</tpages></addata></record> |
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subjects | 2-Isopropylmalate Synthase - chemistry 2-Isopropylmalate Synthase - genetics 631/92/552 631/92/60 631/92/613 Acetyl Coenzyme A - chemistry Binding Sites Biochemical Engineering Biochemistry Bioorganic Chemistry Biosynthesis Carbon Carbon Cycle Case studies Catalysis Cell Biology Chemistry Chemistry and Materials Science Chemistry/Food Science Engineering Enzymes Fatty acids Keto Acids - chemistry Metabolism Models, Molecular Molecular Structure Natural products Polymerization Protein Engineering - methods review-article Small Molecule Libraries - chemical synthesis Small Molecule Libraries - chemistry Substrate Specificity Synthetic Biology - methods |
title | Engineering synthetic recursive pathways to generate non-natural small molecules |
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