PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions
The pseudo-amino acid composition has been widely used to convert complicated protein sequences with various lengths to fixed length digital feature vectors while keeping considerable sequence order information. However, so far the only software available to the public is the web server PseAAC (http...
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| Veröffentlicht in: | Analytical biochemistry 2012-06, Vol.425 (2), p.117-119 |
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| container_title | Analytical biochemistry |
| container_volume | 425 |
| creator | Du, Pufeng Wang, Xin Xu, Chao Gao, Yang |
| description | The pseudo-amino acid composition has been widely used to convert complicated protein sequences with various lengths to fixed length digital feature vectors while keeping considerable sequence order information. However, so far the only software available to the public is the web server PseAAC (http://www.csbio.sjtu.edu.cn/bioinf/PseAAC), which has some limitations in dealing with large-scale datasets. Here, we propose a new cross-platform stand-alone software program, called PseAAC-Builder (http://www.pseb.sf.net), which can be used to generate various modes of Chou’s pseudo-amino acid composition in a much more efficient and flexible way. It is anticipated that PseAAC-Builder may become a useful tool for studying various protein attributes. |
| doi_str_mv | 10.1016/j.ab.2012.03.015 |
| format | Article |
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However, so far the only software available to the public is the web server PseAAC (http://www.csbio.sjtu.edu.cn/bioinf/PseAAC), which has some limitations in dealing with large-scale datasets. Here, we propose a new cross-platform stand-alone software program, called PseAAC-Builder (http://www.pseb.sf.net), which can be used to generate various modes of Chou’s pseudo-amino acid composition in a much more efficient and flexible way. 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It is anticipated that PseAAC-Builder may become a useful tool for studying various protein attributes.</description><subject>amino acid sequences</subject><subject>Amino Acids - chemistry</subject><subject>Chou’s pseudo-amino acid composition</subject><subject>computer software</subject><subject>Cross-platform</subject><subject>data collection</subject><subject>Databases, Protein</subject><subject>Internet</subject><subject>Proteins - chemistry</subject><subject>PseACC server</subject><subject>Software</subject><subject>Stand-alone</subject><issn>0003-2697</issn><issn>1096-0309</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kcFu1DAQhi0Eokvhzgl85JIwtrPJurftigJSJZCgZ2tiTxavkjjYSSXEhdfg9fokeLuFG6c5zDf_jL5h7KWAUoCo3x5KbEsJQpagShDrR2wlQNcFKNCP2QoAVCFr3ZyxZykdAISo1vVTdiZltdZCwor9_Jxou90Vl4vvHcULvuU2hpSKqce5C3HgacbRFdiHkfgUwz7iwHOD72mkiLMf9_wWow9L4mki67Hnu29hufv1O_Ep0eJCgYMfA0frHbdhmELysw9jes6edNgnevFQz9nN1buvuw_F9af3H3fb68JWFcxF5Uii06oTpEht0DpbNaD0pmrQoVzbDlEDgXO6og0CtkI6vW47oWulNrU6Z29Oufn87wul2Qw-Wep7HCmfbbJK1dRSwBGFE3ovIVJnpugHjD8ydORqczDYmqNyA8pk5Xnk1UP60g7k_g38dZyB1yegw2BwH30yN19yQg33D2mOERcngrKFW0_RJOtptOR8JDsbF_z_9_8B7tKcYg</recordid><startdate>20120615</startdate><enddate>20120615</enddate><creator>Du, Pufeng</creator><creator>Wang, Xin</creator><creator>Xu, Chao</creator><creator>Gao, Yang</creator><general>Elsevier Inc</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120615</creationdate><title>PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions</title><author>Du, Pufeng ; Wang, Xin ; Xu, Chao ; Gao, Yang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-4de2ad93f1e3e38acdc47039847ada25cfaa90e0dd94e8a0ab12d95bf19633863</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>amino acid sequences</topic><topic>Amino Acids - chemistry</topic><topic>Chou’s pseudo-amino acid composition</topic><topic>computer software</topic><topic>Cross-platform</topic><topic>data collection</topic><topic>Databases, Protein</topic><topic>Internet</topic><topic>Proteins - chemistry</topic><topic>PseACC server</topic><topic>Software</topic><topic>Stand-alone</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Du, Pufeng</creatorcontrib><creatorcontrib>Wang, Xin</creatorcontrib><creatorcontrib>Xu, Chao</creatorcontrib><creatorcontrib>Gao, Yang</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Analytical biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Du, Pufeng</au><au>Wang, Xin</au><au>Xu, Chao</au><au>Gao, Yang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions</atitle><jtitle>Analytical biochemistry</jtitle><addtitle>Anal Biochem</addtitle><date>2012-06-15</date><risdate>2012</risdate><volume>425</volume><issue>2</issue><spage>117</spage><epage>119</epage><pages>117-119</pages><issn>0003-2697</issn><eissn>1096-0309</eissn><abstract>The pseudo-amino acid composition has been widely used to convert complicated protein sequences with various lengths to fixed length digital feature vectors while keeping considerable sequence order information. 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| ispartof | Analytical biochemistry, 2012-06, Vol.425 (2), p.117-119 |
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| language | eng |
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| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | amino acid sequences Amino Acids - chemistry Chou’s pseudo-amino acid composition computer software Cross-platform data collection Databases, Protein Internet Proteins - chemistry PseACC server Software Stand-alone |
| title | PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions |
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