Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas
A Gram-negative, strictly aerobic, non-flagellated, non-gliding, oxidase- and catalase-positive, yellow-pigmented rod, designated A11T, was isolated from a marine sponge, Halichondria oshoro, collected on the coastline of Jeju Island, Republic of Korea. Phylogenetic analysis based on nearly complete...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2012-05, Vol.62 (Pt 5), p.1158-1164 |
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| creator | Yoon, Byoung-Jun Oh, Duck-Chul |
| description | A Gram-negative, strictly aerobic, non-flagellated, non-gliding, oxidase- and catalase-positive, yellow-pigmented rod, designated A11T, was isolated from a marine sponge, Halichondria oshoro, collected on the coastline of Jeju Island, Republic of Korea. Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that strain A11T was a member of the family Flavobacteriaceae. Its closest relatives were members of the genera Muricauda, Flagellimonas and Croceitalea (94.4–94.8 % 16S rRNA gene sequence similarity). The only polar lipid detected in strain A11T was phosphatidylethanolamine. The dominant fatty acids were iso-C15 : 0 (30.4 %), iso-C15 : 1 G (26.7 %), iso-C17 : 0 3-OH (12.4 %) and iso-C15 : 0 3-OH (7.3 %). The DNA G+C content of strain A11T was 41.7 mol% and its major respiratory quinone was MK-6. On the basis of combined data from phenotypic and phylogenetic analyses, strain A11T represents a novel genus and species within the family Flavobacteriaceae, for which the name Spongiibacterium flavum gen. nov., sp. nov. is proposed. The type strain of the type species is A11T ( = KCTC 22665T = DSM 22638T). Emended descriptions of the genera Croceitalea and Flagellimonas are also given. |
| doi_str_mv | 10.1099/ijs.0.027243-0 |
| format | Article |
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Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that strain A11T was a member of the family Flavobacteriaceae. Its closest relatives were members of the genera Muricauda, Flagellimonas and Croceitalea (94.4–94.8 % 16S rRNA gene sequence similarity). The only polar lipid detected in strain A11T was phosphatidylethanolamine. The dominant fatty acids were iso-C15 : 0 (30.4 %), iso-C15 : 1 G (26.7 %), iso-C17 : 0 3-OH (12.4 %) and iso-C15 : 0 3-OH (7.3 %). The DNA G+C content of strain A11T was 41.7 mol% and its major respiratory quinone was MK-6. On the basis of combined data from phenotypic and phylogenetic analyses, strain A11T represents a novel genus and species within the family Flavobacteriaceae, for which the name Spongiibacterium flavum gen. nov., sp. nov. is proposed. The type strain of the type species is A11T ( = KCTC 22665T = DSM 22638T). Emended descriptions of the genera Croceitalea and Flagellimonas are also given.</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.027243-0</identifier><identifier>PMID: 21724954</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>Aerobiosis ; Animals ; Aquatic Organisms - microbiology ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; Catalase - metabolism ; Cluster Analysis ; coasts ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; fatty acids ; Fatty Acids - analysis ; Flavobacteriaceae ; Flavobacteriaceae - classification ; Flavobacteriaceae - genetics ; Flavobacteriaceae - isolation & purification ; Flavobacteriaceae - physiology ; Fundamental and applied biological sciences. Psychology ; genes ; Microbiology ; Molecular Sequence Data ; new genus ; new species ; nucleotide sequences ; Oxidoreductases - metabolism ; phosphatidylethanolamines ; Phospholipids - analysis ; Phylogeny ; Pigments, Biological - metabolism ; Porifera ; Porifera - microbiology ; Quinones - analysis ; Republic of Korea ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; sequence homology ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-05, Vol.62 (Pt 5), p.1158-1164</ispartof><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c455t-74c95ca43716c012418416249e49c514dfe00cdc4504430968336df7d67b452f3</citedby><cites>FETCH-LOGICAL-c455t-74c95ca43716c012418416249e49c514dfe00cdc4504430968336df7d67b452f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25887972$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21724954$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yoon, Byoung-Jun</creatorcontrib><creatorcontrib>Oh, Duck-Chul</creatorcontrib><title>Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-negative, strictly aerobic, non-flagellated, non-gliding, oxidase- and catalase-positive, yellow-pigmented rod, designated A11T, was isolated from a marine sponge, Halichondria oshoro, collected on the coastline of Jeju Island, Republic of Korea. Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that strain A11T was a member of the family Flavobacteriaceae. Its closest relatives were members of the genera Muricauda, Flagellimonas and Croceitalea (94.4–94.8 % 16S rRNA gene sequence similarity). The only polar lipid detected in strain A11T was phosphatidylethanolamine. The dominant fatty acids were iso-C15 : 0 (30.4 %), iso-C15 : 1 G (26.7 %), iso-C17 : 0 3-OH (12.4 %) and iso-C15 : 0 3-OH (7.3 %). The DNA G+C content of strain A11T was 41.7 mol% and its major respiratory quinone was MK-6. On the basis of combined data from phenotypic and phylogenetic analyses, strain A11T represents a novel genus and species within the family Flavobacteriaceae, for which the name Spongiibacterium flavum gen. nov., sp. nov. is proposed. The type strain of the type species is A11T ( = KCTC 22665T = DSM 22638T). Emended descriptions of the genera Croceitalea and Flagellimonas are also given.</description><subject>Aerobiosis</subject><subject>Animals</subject><subject>Aquatic Organisms - microbiology</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Catalase - metabolism</subject><subject>Cluster Analysis</subject><subject>coasts</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>Flavobacteriaceae</subject><subject>Flavobacteriaceae - classification</subject><subject>Flavobacteriaceae - genetics</subject><subject>Flavobacteriaceae - isolation & purification</subject><subject>Flavobacteriaceae - physiology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genes</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new genus</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>Oxidoreductases - metabolism</subject><subject>phosphatidylethanolamines</subject><subject>Phospholipids - analysis</subject><subject>Phylogeny</subject><subject>Pigments, Biological - metabolism</subject><subject>Porifera</subject><subject>Porifera - microbiology</subject><subject>Quinones - analysis</subject><subject>Republic of Korea</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>Systematics</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkk1v1DAQhiMEoqVw5Qi-IPVAgp3Y-TiiVUuRKnEoPUez9njXVWwHO1upv5K_xHQ_gNOMrOd9ZzSvi-K94JXgw_DFPeSKV7zuatmU_EVxLmTbloo38uV__VnxJucHzumB89fFWS2IH5Q8L37fzTFsnFuDXjC5nWd2gkcqGwwVC_Gx-szyfOqAefRrTCxatmyRWfBuemLXJIlHB9AIyFyOEyxomE3R71EPyQUkLxqH7AYmp7cxGBKwmLcxRXIPhqHHYEhnMOvk5sXFkE_TaCVMwFYpanQLTAh7CU3f4DQ5HwPkt8UrC1PGd8d6UdxfX_1c3ZS3P759X329LbVUaik7qQelQTadaDUXtRS9FC3dBOWglZDGIufaEMylbPjQ9k3TGtuZtltLVdvmorg8-M4p_tphXkbvsqY1IGDc5VFwQZZ123NCqwOqU8w5oR3n5OgcTwSNzyGOFOLIx0OI47Pgw9F7t_Zo_uKn1Aj4dAQga5hsgqBd_sepvu-Gribu44GzEEfYJGLu72ou1P4niL5u_gA-dbCU</recordid><startdate>20120501</startdate><enddate>20120501</enddate><creator>Yoon, Byoung-Jun</creator><creator>Oh, Duck-Chul</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120501</creationdate><title>Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas</title><author>Yoon, Byoung-Jun ; Oh, Duck-Chul</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c455t-74c95ca43716c012418416249e49c514dfe00cdc4504430968336df7d67b452f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Aerobiosis</topic><topic>Animals</topic><topic>Aquatic Organisms - microbiology</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Catalase - metabolism</topic><topic>Cluster Analysis</topic><topic>coasts</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>Flavobacteriaceae</topic><topic>Flavobacteriaceae - classification</topic><topic>Flavobacteriaceae - genetics</topic><topic>Flavobacteriaceae - isolation & purification</topic><topic>Flavobacteriaceae - physiology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genes</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new genus</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>Oxidoreductases - metabolism</topic><topic>phosphatidylethanolamines</topic><topic>Phospholipids - analysis</topic><topic>Phylogeny</topic><topic>Pigments, Biological - metabolism</topic><topic>Porifera</topic><topic>Porifera - microbiology</topic><topic>Quinones - analysis</topic><topic>Republic of Korea</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yoon, Byoung-Jun</creatorcontrib><creatorcontrib>Oh, Duck-Chul</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yoon, Byoung-Jun</au><au>Oh, Duck-Chul</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-05-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 5</issue><spage>1158</spage><epage>1164</epage><pages>1158-1164</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-negative, strictly aerobic, non-flagellated, non-gliding, oxidase- and catalase-positive, yellow-pigmented rod, designated A11T, was isolated from a marine sponge, Halichondria oshoro, collected on the coastline of Jeju Island, Republic of Korea. Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that strain A11T was a member of the family Flavobacteriaceae. Its closest relatives were members of the genera Muricauda, Flagellimonas and Croceitalea (94.4–94.8 % 16S rRNA gene sequence similarity). The only polar lipid detected in strain A11T was phosphatidylethanolamine. The dominant fatty acids were iso-C15 : 0 (30.4 %), iso-C15 : 1 G (26.7 %), iso-C17 : 0 3-OH (12.4 %) and iso-C15 : 0 3-OH (7.3 %). The DNA G+C content of strain A11T was 41.7 mol% and its major respiratory quinone was MK-6. On the basis of combined data from phenotypic and phylogenetic analyses, strain A11T represents a novel genus and species within the family Flavobacteriaceae, for which the name Spongiibacterium flavum gen. nov., sp. nov. is proposed. The type strain of the type species is A11T ( = KCTC 22665T = DSM 22638T). Emended descriptions of the genera Croceitalea and Flagellimonas are also given.</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>21724954</pmid><doi>10.1099/ijs.0.027243-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Aerobiosis Animals Aquatic Organisms - microbiology Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences Catalase - metabolism Cluster Analysis coasts DNA DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics fatty acids Fatty Acids - analysis Flavobacteriaceae Flavobacteriaceae - classification Flavobacteriaceae - genetics Flavobacteriaceae - isolation & purification Flavobacteriaceae - physiology Fundamental and applied biological sciences. Psychology genes Microbiology Molecular Sequence Data new genus new species nucleotide sequences Oxidoreductases - metabolism phosphatidylethanolamines Phospholipids - analysis Phylogeny Pigments, Biological - metabolism Porifera Porifera - microbiology Quinones - analysis Republic of Korea ribosomal RNA RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA sequence homology Systematics |
| title | Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas |
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