Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment
A novel aerobic streptomycete, strain SCSIO 01248T, was isolated from a sample of deep-sea sediment collected from the northern South China Sea, at a depth of 1632 m. This isolate formed yellow-white substrate mycelium and grey-white aerial hyphae. Phylogenetic analysis based on 16S rRNA gene sequen...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2012-04, Vol.62 (Pt 4), p.864-868 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | TIAN, Xin-Peng LONG, Li-Juan WANG, Fa-Zuo YING XU JIE LI JINGZHANG ZHANG, Chang-Sheng SI ZHANG LI, Wen-Jun |
| description | A novel aerobic streptomycete, strain SCSIO 01248T, was isolated from a sample of deep-sea sediment collected from the northern South China Sea, at a depth of 1632 m. This isolate formed yellow-white substrate mycelium and grey-white aerial hyphae. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SCSIO 01248T was most closely related to Streptomyces radiopugnans R97T (98.8 % sequence similarity), S. macrosporus NBRC 14748T (97.5 %) and S. megasporus NBRC 14749T (97.3 %). The novel strain could, however, be readily differentiated from S. radiopugnans DSM 41901T on the basis of some physiological and cellular chemical characteristics; the level of DNA-DNA relatedness between these two strains was only 40 %. Based on phylogenetic and phenotypic evidence, strain SCSIO 01248T represents a novel species, for which the name Streptomyces nanhaiensis sp. nov. is proposed. The type strain is SCSIO 01248T (=DSM 41926T=KCTC 19401T=CCTCC AA 208007T). |
| doi_str_mv | 10.1099/ijs.0.031591-0 |
| format | Article |
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This isolate formed yellow-white substrate mycelium and grey-white aerial hyphae. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SCSIO 01248T was most closely related to Streptomyces radiopugnans R97T (98.8 % sequence similarity), S. macrosporus NBRC 14748T (97.5 %) and S. megasporus NBRC 14749T (97.3 %). The novel strain could, however, be readily differentiated from S. radiopugnans DSM 41901T on the basis of some physiological and cellular chemical characteristics; the level of DNA-DNA relatedness between these two strains was only 40 %. Based on phylogenetic and phenotypic evidence, strain SCSIO 01248T represents a novel species, for which the name Streptomyces nanhaiensis sp. nov. is proposed. The type strain is SCSIO 01248T (=DSM 41926T=KCTC 19401T=CCTCC AA 208007T).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.031591-0</identifier><identifier>PMID: 21622834</identifier><language>eng</language><publisher>Reading: Society for General Microbiology</publisher><subject>Animal, plant and microbial ecology ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; China ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Fundamental and applied biological sciences. Psychology ; Geologic Sediments - microbiology ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Oceans and Seas ; Peptidoglycan - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Sequence Analysis, DNA ; Streptomyces - classification ; Streptomyces - genetics ; Streptomyces - isolation & purification ; Systematics ; Various environments (extraatmospheric space, air, water) ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-04, Vol.62 (Pt 4), p.864-868</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c365t-7f4596438a5827721e429e8f10235429d0b23a7bb1d0dd3d478409534ba1b8723</citedby><cites>FETCH-LOGICAL-c365t-7f4596438a5827721e429e8f10235429d0b23a7bb1d0dd3d478409534ba1b8723</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25778334$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21622834$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>TIAN, Xin-Peng</creatorcontrib><creatorcontrib>LONG, Li-Juan</creatorcontrib><creatorcontrib>WANG, Fa-Zuo</creatorcontrib><creatorcontrib>YING XU</creatorcontrib><creatorcontrib>JIE LI</creatorcontrib><creatorcontrib>JINGZHANG</creatorcontrib><creatorcontrib>ZHANG, Chang-Sheng</creatorcontrib><creatorcontrib>SI ZHANG</creatorcontrib><creatorcontrib>LI, Wen-Jun</creatorcontrib><title>Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A novel aerobic streptomycete, strain SCSIO 01248T, was isolated from a sample of deep-sea sediment collected from the northern South China Sea, at a depth of 1632 m. This isolate formed yellow-white substrate mycelium and grey-white aerial hyphae. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SCSIO 01248T was most closely related to Streptomyces radiopugnans R97T (98.8 % sequence similarity), S. macrosporus NBRC 14748T (97.5 %) and S. megasporus NBRC 14749T (97.3 %). The novel strain could, however, be readily differentiated from S. radiopugnans DSM 41901T on the basis of some physiological and cellular chemical characteristics; the level of DNA-DNA relatedness between these two strains was only 40 %. Based on phylogenetic and phenotypic evidence, strain SCSIO 01248T represents a novel species, for which the name Streptomyces nanhaiensis sp. nov. is proposed. The type strain is SCSIO 01248T (=DSM 41926T=KCTC 19401T=CCTCC AA 208007T).</description><subject>Animal, plant and microbial ecology</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>China</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Geologic Sediments - microbiology</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Oceans and Seas</subject><subject>Peptidoglycan - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Streptomyces - classification</subject><subject>Streptomyces - genetics</subject><subject>Streptomyces - isolation & purification</subject><subject>Systematics</subject><subject>Various environments (extraatmospheric space, air, water)</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpF0EtLw0AQB_BFFFurV4-yF8GDibOvPI4ivkDwoJ48hE12glvyMpMK_fautLanGYbfDMyfsXMBsYA8v_FLiiEGJUwuIjhgc6GTJDKg9OGul8mMnRAtAcIA4JjNpEikzJSes8-3acRh6tt1hcQ7231Zjx154jTEvOt_4mtueWtH3yGnvZ2Qe-obO6Hj9di3ATnEISK0nND5FrvplB3VtiE829YF-3i4f797il5eH5_vbl-iSiVmitJamzzRKrMmk2kqBWqZY1YLkMqE1kEplU3LUjhwTjmdZhpyo3RpRZmlUi3Y1ebuMPbfK6SpaD1V2DS2w35FhQAADUaHnQWLN7Qae6IR62IYffhuHVDxF2gRAi2g2AQayoJdbG-vyhbdjv8nGMDlFliqbFOPtqs87Z1J00wF9wsB_X0u</recordid><startdate>20120401</startdate><enddate>20120401</enddate><creator>TIAN, Xin-Peng</creator><creator>LONG, Li-Juan</creator><creator>WANG, Fa-Zuo</creator><creator>YING XU</creator><creator>JIE LI</creator><creator>JINGZHANG</creator><creator>ZHANG, Chang-Sheng</creator><creator>SI ZHANG</creator><creator>LI, Wen-Jun</creator><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20120401</creationdate><title>Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment</title><author>TIAN, Xin-Peng ; LONG, Li-Juan ; WANG, Fa-Zuo ; YING XU ; JIE LI ; JINGZHANG ; ZHANG, Chang-Sheng ; SI ZHANG ; LI, Wen-Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c365t-7f4596438a5827721e429e8f10235429d0b23a7bb1d0dd3d478409534ba1b8723</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>China</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Geologic Sediments - microbiology</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Hybridization</topic><topic>Oceans and Seas</topic><topic>Peptidoglycan - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>Streptomyces - classification</topic><topic>Streptomyces - genetics</topic><topic>Streptomyces - isolation & purification</topic><topic>Systematics</topic><topic>Various environments (extraatmospheric space, air, water)</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>TIAN, Xin-Peng</creatorcontrib><creatorcontrib>LONG, Li-Juan</creatorcontrib><creatorcontrib>WANG, Fa-Zuo</creatorcontrib><creatorcontrib>YING XU</creatorcontrib><creatorcontrib>JIE LI</creatorcontrib><creatorcontrib>JINGZHANG</creatorcontrib><creatorcontrib>ZHANG, Chang-Sheng</creatorcontrib><creatorcontrib>SI ZHANG</creatorcontrib><creatorcontrib>LI, Wen-Jun</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>TIAN, Xin-Peng</au><au>LONG, Li-Juan</au><au>WANG, Fa-Zuo</au><au>YING XU</au><au>JIE LI</au><au>JINGZHANG</au><au>ZHANG, Chang-Sheng</au><au>SI ZHANG</au><au>LI, Wen-Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-04-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 4</issue><spage>864</spage><epage>868</epage><pages>864-868</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A novel aerobic streptomycete, strain SCSIO 01248T, was isolated from a sample of deep-sea sediment collected from the northern South China Sea, at a depth of 1632 m. This isolate formed yellow-white substrate mycelium and grey-white aerial hyphae. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SCSIO 01248T was most closely related to Streptomyces radiopugnans R97T (98.8 % sequence similarity), S. macrosporus NBRC 14748T (97.5 %) and S. megasporus NBRC 14749T (97.3 %). The novel strain could, however, be readily differentiated from S. radiopugnans DSM 41901T on the basis of some physiological and cellular chemical characteristics; the level of DNA-DNA relatedness between these two strains was only 40 %. Based on phylogenetic and phenotypic evidence, strain SCSIO 01248T represents a novel species, for which the name Streptomyces nanhaiensis sp. nov. is proposed. The type strain is SCSIO 01248T (=DSM 41926T=KCTC 19401T=CCTCC AA 208007T).</abstract><cop>Reading</cop><pub>Society for General Microbiology</pub><pmid>21622834</pmid><doi>10.1099/ijs.0.031591-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Animal, plant and microbial ecology Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences China DNA, Bacterial - genetics Fatty Acids - chemistry Fundamental and applied biological sciences. Psychology Geologic Sediments - microbiology Microbial ecology Microbiology Molecular Sequence Data Nucleic Acid Hybridization Oceans and Seas Peptidoglycan - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Seawater - microbiology Sequence Analysis, DNA Streptomyces - classification Streptomyces - genetics Streptomyces - isolation & purification Systematics Various environments (extraatmospheric space, air, water) Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment |
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