Chromosome–level genome assembly of the seasonally polyphenic scorpionfly (Panorpa liui)
Mecoptera is a small relict order of insects within the Holometabola. Panorpidae is the most speciose family in Mecoptera. They are also known as scorpion flies due to the enlarged and upward recurved male genital bulb. Panorpa liui Hua, 1997, a member of Panorpidae, is a bivoltine species of season...
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| creator | Liu, Jiuzhou Gao, Yuetian Ding, Shuangmei Zhan, Shuai Yang, Ding Liu, Xiaoyan |
| description | Mecoptera is a small relict order of insects within the Holometabola. Panorpidae is the most speciose family in Mecoptera. They are also known as scorpion flies due to the enlarged and upward recurved male genital bulb.
Panorpa liui
Hua, 1997, a member of Panorpidae, is a bivoltine species of seasonal color polyphenism in the lowland plain of northeastern China. In this study, we applied PacBio HiFi and Hi–C sequencing technologies to generate a chromosome-level genome reference of
P. liui
. The assembled genome is 678.26 Mbp in size, with 91.3% being anchored onto 23 pseudo–chromosomes. Benchmarking Universal Single–Copy Orthologs (BUSCO) estimation reveals the completeness of this assembly as 95.1%. By integrating full-length transcriptome and homologs of related species, we generated full annotation of this assembly, yielding a total of 15,960 protein–coding genes, of these, 15,892 genes were anchored on the 23 chromosomes. The high-quality genome provides critical genomic resources for population genetics and phylogenetic research on Mecoptera. It also offers valuable information for exploring the mechanisms underlying seasonal color polymorphism. |
| doi_str_mv | 10.1038/s41597-025-04365-6 |
| format | Article |
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Panorpa liui
Hua, 1997, a member of Panorpidae, is a bivoltine species of seasonal color polyphenism in the lowland plain of northeastern China. In this study, we applied PacBio HiFi and Hi–C sequencing technologies to generate a chromosome-level genome reference of
P. liui
. The assembled genome is 678.26 Mbp in size, with 91.3% being anchored onto 23 pseudo–chromosomes. Benchmarking Universal Single–Copy Orthologs (BUSCO) estimation reveals the completeness of this assembly as 95.1%. By integrating full-length transcriptome and homologs of related species, we generated full annotation of this assembly, yielding a total of 15,960 protein–coding genes, of these, 15,892 genes were anchored on the 23 chromosomes. The high-quality genome provides critical genomic resources for population genetics and phylogenetic research on Mecoptera. It also offers valuable information for exploring the mechanisms underlying seasonal color polymorphism.</description><identifier>ISSN: 2052-4463</identifier><identifier>EISSN: 2052-4463</identifier><identifier>DOI: 10.1038/s41597-025-04365-6</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/181 ; 631/208/726 ; Chromosomes ; Data Descriptor ; Gene polymorphism ; Genomes ; Humanities and Social Sciences ; Mecoptera ; multidisciplinary ; Panorpa ; Panorpidae ; Population genetics ; Science ; Science (multidisciplinary) ; Transcriptomes</subject><ispartof>Scientific data, 2025-01, Vol.12 (1), p.22, Article 22</ispartof><rights>The Author(s) 2025</rights><rights>Copyright Nature Publishing Group 2025</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c1156-1616b7d617df6da02044cdc935c7c68c614ae514ffc092b29123e9b3cdb3da803</cites><orcidid>0000-0001-6266-6156</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/s41597-025-04365-6$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://doi.org/10.1038/s41597-025-04365-6$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,864,27923,27924,41119,42188,51575</link.rule.ids></links><search><creatorcontrib>Liu, Jiuzhou</creatorcontrib><creatorcontrib>Gao, Yuetian</creatorcontrib><creatorcontrib>Ding, Shuangmei</creatorcontrib><creatorcontrib>Zhan, Shuai</creatorcontrib><creatorcontrib>Yang, Ding</creatorcontrib><creatorcontrib>Liu, Xiaoyan</creatorcontrib><title>Chromosome–level genome assembly of the seasonally polyphenic scorpionfly (Panorpa liui)</title><title>Scientific data</title><addtitle>Sci Data</addtitle><description>Mecoptera is a small relict order of insects within the Holometabola. Panorpidae is the most speciose family in Mecoptera. They are also known as scorpion flies due to the enlarged and upward recurved male genital bulb.
Panorpa liui
Hua, 1997, a member of Panorpidae, is a bivoltine species of seasonal color polyphenism in the lowland plain of northeastern China. In this study, we applied PacBio HiFi and Hi–C sequencing technologies to generate a chromosome-level genome reference of
P. liui
. The assembled genome is 678.26 Mbp in size, with 91.3% being anchored onto 23 pseudo–chromosomes. Benchmarking Universal Single–Copy Orthologs (BUSCO) estimation reveals the completeness of this assembly as 95.1%. By integrating full-length transcriptome and homologs of related species, we generated full annotation of this assembly, yielding a total of 15,960 protein–coding genes, of these, 15,892 genes were anchored on the 23 chromosomes. The high-quality genome provides critical genomic resources for population genetics and phylogenetic research on Mecoptera. 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Panorpidae is the most speciose family in Mecoptera. They are also known as scorpion flies due to the enlarged and upward recurved male genital bulb.
Panorpa liui
Hua, 1997, a member of Panorpidae, is a bivoltine species of seasonal color polyphenism in the lowland plain of northeastern China. In this study, we applied PacBio HiFi and Hi–C sequencing technologies to generate a chromosome-level genome reference of
P. liui
. The assembled genome is 678.26 Mbp in size, with 91.3% being anchored onto 23 pseudo–chromosomes. Benchmarking Universal Single–Copy Orthologs (BUSCO) estimation reveals the completeness of this assembly as 95.1%. By integrating full-length transcriptome and homologs of related species, we generated full annotation of this assembly, yielding a total of 15,960 protein–coding genes, of these, 15,892 genes were anchored on the 23 chromosomes. The high-quality genome provides critical genomic resources for population genetics and phylogenetic research on Mecoptera. It also offers valuable information for exploring the mechanisms underlying seasonal color polymorphism.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><doi>10.1038/s41597-025-04365-6</doi><orcidid>https://orcid.org/0000-0001-6266-6156</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | 631/181 631/208/726 Chromosomes Data Descriptor Gene polymorphism Genomes Humanities and Social Sciences Mecoptera multidisciplinary Panorpa Panorpidae Population genetics Science Science (multidisciplinary) Transcriptomes |
| title | Chromosome–level genome assembly of the seasonally polyphenic scorpionfly (Panorpa liui) |
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