Metabolites Profiling of Humid Tropic Simulated Bungor Soil Under Biofertilizer Application
Purpose Biofertilizer application in the agriculture industries is deemed sustainable in the long run given its ability to restore fertility of soil and increase crops productivity through several direct and indirect mechanisms. However, the dissolved fraction (DOM), which is made up of tiny molecul...
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| Veröffentlicht in: | Journal of soil science and plant nutrition 2024-09, Vol.24 (3), p.6072-6084 |
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| container_title | Journal of soil science and plant nutrition |
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| creator | Ajeng, Aaronn Avit Shim, Goh Suk Abdullah, Rosazlin Ling, Tau Chuan Khoo, Kuan Shiong |
| description | Purpose
Biofertilizer application in the agriculture industries is deemed sustainable in the long run given its ability to restore fertility of soil and increase crops productivity through several direct and indirect mechanisms. However, the dissolved fraction (DOM), which is made up of tiny molecules of plant and microbial origin produced by lysed cells and released metabolites as influenced directly through biofertilizer amendment is unknown.
Methods
An untargeted metabolomics profiling was conducted via an in vitro rhizospheric
Bungor
soil series incubation with IBG Biofertilizer from IBG Manufacturing Sdn Bhd. In this study, a comparative analysis between Ultisols samples inoculated with IBG biofertilizer and control samples was conducted under simulated humid tropic conditions.
Results
18 mass-to-charge ratio (m/z) values with VIP (Variable Importance in Projection) scores exceeding 1 in the IBG biofertilizer-inoculated Ultisol. The annotated metabolites primarily consisted of endogenous compounds, including amino acids, organic acids, nucleic acids, fatty acids, and amines. Notably, a signaling compound, homoserine lactone (m/z 270), exhibited the highest fold changes in response to IBG biofertilizer inoculation on the simulated Ultisol. Furthermore, key metabolic pathways such as Glycerophospholipid metabolism, Glycine, serine, and threonine metabolism, Cysteine and methionine metabolism, and Alanine, aspartate, and glutamate metabolism were notably affected by IBG biofertilizer inoculation on the simulated soil model.
Conclusions
These findings emphasized the metabolic responses induced by IBG biofertilizer in Ultisols under the simulated humid tropic conditions., which suggests that biofertilizers application have some significant changes on soil metabolites that overall soil productivity could be affected by these potential biomarkers. Understanding these metabolic shifts not only enhances crop productivity but also addresses broader questions of soil health and ecosystem sustainability in the face of climate change and agricultural intensification. |
| doi_str_mv | 10.1007/s42729-024-01961-0 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_3112684289</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3112684289</sourcerecordid><originalsourceid>FETCH-LOGICAL-c200t-397b491345be1c06015a447aca8f00de24d949d33e262b8981ffaf76f7039b1b3</originalsourceid><addsrcrecordid>eNp9kE1LAzEQhoMoWKp_wFPA8-rkYzebY1vUChWFticPIbublJTtZk12D_rrjVb05lxmBt5nBh6ErgjcEABxGzkVVGZAeQZEFiSDEzQBQcpM5qQ4_Z2hPEeXMe4hVQmQg5ig1ycz6Mq3bjARvwRvXeu6HfYWL8eDa_Am-N7VeO0OY6sH0-D52O18wGvvWrztGhPw3HlrwpDAj7TN-r51tR6c7y7QmdVtNJc_fYq293ebxTJbPT88LmarrKYAQ8akqLgkjOeVITUUQHLNudC1Li1AYyhvJJcNY4YWtCplSazVVhRWAJMVqdgUXR_v9sG_jSYOau_H0KWXihFCi5LTUqYUPabq4GMMxqo-uIMO74qA-vKojh5V8qi-PSpIEDtCMYW7nQl_p_-hPgGjvXVP</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3112684289</pqid></control><display><type>article</type><title>Metabolites Profiling of Humid Tropic Simulated Bungor Soil Under Biofertilizer Application</title><source>Springer Nature - Complete Springer Journals</source><source>Alma/SFX Local Collection</source><creator>Ajeng, Aaronn Avit ; Shim, Goh Suk ; Abdullah, Rosazlin ; Ling, Tau Chuan ; Khoo, Kuan Shiong</creator><creatorcontrib>Ajeng, Aaronn Avit ; Shim, Goh Suk ; Abdullah, Rosazlin ; Ling, Tau Chuan ; Khoo, Kuan Shiong</creatorcontrib><description>Purpose
Biofertilizer application in the agriculture industries is deemed sustainable in the long run given its ability to restore fertility of soil and increase crops productivity through several direct and indirect mechanisms. However, the dissolved fraction (DOM), which is made up of tiny molecules of plant and microbial origin produced by lysed cells and released metabolites as influenced directly through biofertilizer amendment is unknown.
Methods
An untargeted metabolomics profiling was conducted via an in vitro rhizospheric
Bungor
soil series incubation with IBG Biofertilizer from IBG Manufacturing Sdn Bhd. In this study, a comparative analysis between Ultisols samples inoculated with IBG biofertilizer and control samples was conducted under simulated humid tropic conditions.
Results
18 mass-to-charge ratio (m/z) values with VIP (Variable Importance in Projection) scores exceeding 1 in the IBG biofertilizer-inoculated Ultisol. The annotated metabolites primarily consisted of endogenous compounds, including amino acids, organic acids, nucleic acids, fatty acids, and amines. Notably, a signaling compound, homoserine lactone (m/z 270), exhibited the highest fold changes in response to IBG biofertilizer inoculation on the simulated Ultisol. Furthermore, key metabolic pathways such as Glycerophospholipid metabolism, Glycine, serine, and threonine metabolism, Cysteine and methionine metabolism, and Alanine, aspartate, and glutamate metabolism were notably affected by IBG biofertilizer inoculation on the simulated soil model.
Conclusions
These findings emphasized the metabolic responses induced by IBG biofertilizer in Ultisols under the simulated humid tropic conditions., which suggests that biofertilizers application have some significant changes on soil metabolites that overall soil productivity could be affected by these potential biomarkers. Understanding these metabolic shifts not only enhances crop productivity but also addresses broader questions of soil health and ecosystem sustainability in the face of climate change and agricultural intensification.</description><identifier>ISSN: 0718-9508</identifier><identifier>EISSN: 0718-9516</identifier><identifier>DOI: 10.1007/s42729-024-01961-0</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Agricultural ecosystems ; Agricultural industry ; Agricultural production ; Agriculture ; Alanine ; Amines ; Amino acids ; Biofertilizers ; Biomarkers ; Biomedical and Life Sciences ; Climate change ; Comparative analysis ; Crop production ; Crops ; Ecology ; Environment ; Enzymes ; Fertilizers ; Glycine ; In vitro methods and tests ; Inoculation ; Intensive farming ; Life Sciences ; Metabolic pathways ; Metabolic response ; Metabolism ; Metabolites ; Metabolomics ; Methionine ; Microorganisms ; Nucleic acids ; Organic acids ; Original Paper ; Phosphatase ; Phosphorus ; Plant cells ; Plant layout ; Plant Sciences ; Productivity ; Soil analysis ; Soil fertility ; Soil Science & Conservation ; Soils ; Sustainable ecosystems</subject><ispartof>Journal of soil science and plant nutrition, 2024-09, Vol.24 (3), p.6072-6084</ispartof><rights>The Author(s) under exclusive licence to Sociedad Chilena de la Ciencia del Suelo 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c200t-397b491345be1c06015a447aca8f00de24d949d33e262b8981ffaf76f7039b1b3</cites><orcidid>0000-0002-5369-2675</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s42729-024-01961-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s42729-024-01961-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51298</link.rule.ids></links><search><creatorcontrib>Ajeng, Aaronn Avit</creatorcontrib><creatorcontrib>Shim, Goh Suk</creatorcontrib><creatorcontrib>Abdullah, Rosazlin</creatorcontrib><creatorcontrib>Ling, Tau Chuan</creatorcontrib><creatorcontrib>Khoo, Kuan Shiong</creatorcontrib><title>Metabolites Profiling of Humid Tropic Simulated Bungor Soil Under Biofertilizer Application</title><title>Journal of soil science and plant nutrition</title><addtitle>J Soil Sci Plant Nutr</addtitle><description>Purpose
Biofertilizer application in the agriculture industries is deemed sustainable in the long run given its ability to restore fertility of soil and increase crops productivity through several direct and indirect mechanisms. However, the dissolved fraction (DOM), which is made up of tiny molecules of plant and microbial origin produced by lysed cells and released metabolites as influenced directly through biofertilizer amendment is unknown.
Methods
An untargeted metabolomics profiling was conducted via an in vitro rhizospheric
Bungor
soil series incubation with IBG Biofertilizer from IBG Manufacturing Sdn Bhd. In this study, a comparative analysis between Ultisols samples inoculated with IBG biofertilizer and control samples was conducted under simulated humid tropic conditions.
Results
18 mass-to-charge ratio (m/z) values with VIP (Variable Importance in Projection) scores exceeding 1 in the IBG biofertilizer-inoculated Ultisol. The annotated metabolites primarily consisted of endogenous compounds, including amino acids, organic acids, nucleic acids, fatty acids, and amines. Notably, a signaling compound, homoserine lactone (m/z 270), exhibited the highest fold changes in response to IBG biofertilizer inoculation on the simulated Ultisol. Furthermore, key metabolic pathways such as Glycerophospholipid metabolism, Glycine, serine, and threonine metabolism, Cysteine and methionine metabolism, and Alanine, aspartate, and glutamate metabolism were notably affected by IBG biofertilizer inoculation on the simulated soil model.
Conclusions
These findings emphasized the metabolic responses induced by IBG biofertilizer in Ultisols under the simulated humid tropic conditions., which suggests that biofertilizers application have some significant changes on soil metabolites that overall soil productivity could be affected by these potential biomarkers. Understanding these metabolic shifts not only enhances crop productivity but also addresses broader questions of soil health and ecosystem sustainability in the face of climate change and agricultural intensification.</description><subject>Agricultural ecosystems</subject><subject>Agricultural industry</subject><subject>Agricultural production</subject><subject>Agriculture</subject><subject>Alanine</subject><subject>Amines</subject><subject>Amino acids</subject><subject>Biofertilizers</subject><subject>Biomarkers</subject><subject>Biomedical and Life Sciences</subject><subject>Climate change</subject><subject>Comparative analysis</subject><subject>Crop production</subject><subject>Crops</subject><subject>Ecology</subject><subject>Environment</subject><subject>Enzymes</subject><subject>Fertilizers</subject><subject>Glycine</subject><subject>In vitro methods and tests</subject><subject>Inoculation</subject><subject>Intensive farming</subject><subject>Life Sciences</subject><subject>Metabolic pathways</subject><subject>Metabolic response</subject><subject>Metabolism</subject><subject>Metabolites</subject><subject>Metabolomics</subject><subject>Methionine</subject><subject>Microorganisms</subject><subject>Nucleic acids</subject><subject>Organic acids</subject><subject>Original Paper</subject><subject>Phosphatase</subject><subject>Phosphorus</subject><subject>Plant cells</subject><subject>Plant layout</subject><subject>Plant Sciences</subject><subject>Productivity</subject><subject>Soil analysis</subject><subject>Soil fertility</subject><subject>Soil Science & Conservation</subject><subject>Soils</subject><subject>Sustainable ecosystems</subject><issn>0718-9508</issn><issn>0718-9516</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kE1LAzEQhoMoWKp_wFPA8-rkYzebY1vUChWFticPIbublJTtZk12D_rrjVb05lxmBt5nBh6ErgjcEABxGzkVVGZAeQZEFiSDEzQBQcpM5qQ4_Z2hPEeXMe4hVQmQg5ig1ycz6Mq3bjARvwRvXeu6HfYWL8eDa_Am-N7VeO0OY6sH0-D52O18wGvvWrztGhPw3HlrwpDAj7TN-r51tR6c7y7QmdVtNJc_fYq293ebxTJbPT88LmarrKYAQ8akqLgkjOeVITUUQHLNudC1Li1AYyhvJJcNY4YWtCplSazVVhRWAJMVqdgUXR_v9sG_jSYOau_H0KWXihFCi5LTUqYUPabq4GMMxqo-uIMO74qA-vKojh5V8qi-PSpIEDtCMYW7nQl_p_-hPgGjvXVP</recordid><startdate>20240901</startdate><enddate>20240901</enddate><creator>Ajeng, Aaronn Avit</creator><creator>Shim, Goh Suk</creator><creator>Abdullah, Rosazlin</creator><creator>Ling, Tau Chuan</creator><creator>Khoo, Kuan Shiong</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0002-5369-2675</orcidid></search><sort><creationdate>20240901</creationdate><title>Metabolites Profiling of Humid Tropic Simulated Bungor Soil Under Biofertilizer Application</title><author>Ajeng, Aaronn Avit ; Shim, Goh Suk ; Abdullah, Rosazlin ; Ling, Tau Chuan ; Khoo, Kuan Shiong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c200t-397b491345be1c06015a447aca8f00de24d949d33e262b8981ffaf76f7039b1b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Agricultural ecosystems</topic><topic>Agricultural industry</topic><topic>Agricultural production</topic><topic>Agriculture</topic><topic>Alanine</topic><topic>Amines</topic><topic>Amino acids</topic><topic>Biofertilizers</topic><topic>Biomarkers</topic><topic>Biomedical and Life Sciences</topic><topic>Climate change</topic><topic>Comparative analysis</topic><topic>Crop production</topic><topic>Crops</topic><topic>Ecology</topic><topic>Environment</topic><topic>Enzymes</topic><topic>Fertilizers</topic><topic>Glycine</topic><topic>In vitro methods and tests</topic><topic>Inoculation</topic><topic>Intensive farming</topic><topic>Life Sciences</topic><topic>Metabolic pathways</topic><topic>Metabolic response</topic><topic>Metabolism</topic><topic>Metabolites</topic><topic>Metabolomics</topic><topic>Methionine</topic><topic>Microorganisms</topic><topic>Nucleic acids</topic><topic>Organic acids</topic><topic>Original Paper</topic><topic>Phosphatase</topic><topic>Phosphorus</topic><topic>Plant cells</topic><topic>Plant layout</topic><topic>Plant Sciences</topic><topic>Productivity</topic><topic>Soil analysis</topic><topic>Soil fertility</topic><topic>Soil Science & Conservation</topic><topic>Soils</topic><topic>Sustainable ecosystems</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ajeng, Aaronn Avit</creatorcontrib><creatorcontrib>Shim, Goh Suk</creatorcontrib><creatorcontrib>Abdullah, Rosazlin</creatorcontrib><creatorcontrib>Ling, Tau Chuan</creatorcontrib><creatorcontrib>Khoo, Kuan Shiong</creatorcontrib><collection>CrossRef</collection><jtitle>Journal of soil science and plant nutrition</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ajeng, Aaronn Avit</au><au>Shim, Goh Suk</au><au>Abdullah, Rosazlin</au><au>Ling, Tau Chuan</au><au>Khoo, Kuan Shiong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metabolites Profiling of Humid Tropic Simulated Bungor Soil Under Biofertilizer Application</atitle><jtitle>Journal of soil science and plant nutrition</jtitle><stitle>J Soil Sci Plant Nutr</stitle><date>2024-09-01</date><risdate>2024</risdate><volume>24</volume><issue>3</issue><spage>6072</spage><epage>6084</epage><pages>6072-6084</pages><issn>0718-9508</issn><eissn>0718-9516</eissn><abstract>Purpose
Biofertilizer application in the agriculture industries is deemed sustainable in the long run given its ability to restore fertility of soil and increase crops productivity through several direct and indirect mechanisms. However, the dissolved fraction (DOM), which is made up of tiny molecules of plant and microbial origin produced by lysed cells and released metabolites as influenced directly through biofertilizer amendment is unknown.
Methods
An untargeted metabolomics profiling was conducted via an in vitro rhizospheric
Bungor
soil series incubation with IBG Biofertilizer from IBG Manufacturing Sdn Bhd. In this study, a comparative analysis between Ultisols samples inoculated with IBG biofertilizer and control samples was conducted under simulated humid tropic conditions.
Results
18 mass-to-charge ratio (m/z) values with VIP (Variable Importance in Projection) scores exceeding 1 in the IBG biofertilizer-inoculated Ultisol. The annotated metabolites primarily consisted of endogenous compounds, including amino acids, organic acids, nucleic acids, fatty acids, and amines. Notably, a signaling compound, homoserine lactone (m/z 270), exhibited the highest fold changes in response to IBG biofertilizer inoculation on the simulated Ultisol. Furthermore, key metabolic pathways such as Glycerophospholipid metabolism, Glycine, serine, and threonine metabolism, Cysteine and methionine metabolism, and Alanine, aspartate, and glutamate metabolism were notably affected by IBG biofertilizer inoculation on the simulated soil model.
Conclusions
These findings emphasized the metabolic responses induced by IBG biofertilizer in Ultisols under the simulated humid tropic conditions., which suggests that biofertilizers application have some significant changes on soil metabolites that overall soil productivity could be affected by these potential biomarkers. Understanding these metabolic shifts not only enhances crop productivity but also addresses broader questions of soil health and ecosystem sustainability in the face of climate change and agricultural intensification.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s42729-024-01961-0</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-5369-2675</orcidid></addata></record> |
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| subjects | Agricultural ecosystems Agricultural industry Agricultural production Agriculture Alanine Amines Amino acids Biofertilizers Biomarkers Biomedical and Life Sciences Climate change Comparative analysis Crop production Crops Ecology Environment Enzymes Fertilizers Glycine In vitro methods and tests Inoculation Intensive farming Life Sciences Metabolic pathways Metabolic response Metabolism Metabolites Metabolomics Methionine Microorganisms Nucleic acids Organic acids Original Paper Phosphatase Phosphorus Plant cells Plant layout Plant Sciences Productivity Soil analysis Soil fertility Soil Science & Conservation Soils Sustainable ecosystems |
| title | Metabolites Profiling of Humid Tropic Simulated Bungor Soil Under Biofertilizer Application |
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