Genome-Wide Association Study for Meat Quality Traits in a Multi-Breed Pig Population
This study aimed at identifying genomic regions that affect nine pork quality traits in purebred and crossbred fatteners. A total of 259 fatteners represented by six purebreds/crosses were genotyped for 45556 SNP markers by Illumina Porcine SNP60 BeadChip. The following traits were recorded: glycoge...
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| Veröffentlicht in: | Annals of animal science 2024-07, Vol.24 (3), p.767-777 |
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| creator | Kamiński, Stanisław Tarczyński, Krystian Oleński, Kamil Zybert, Andrzej Sieczkowska, Halina Krzęcio-Nieczyporuk, Elżbieta Antosik, Katarzyna Szwaczkowski, Tomasz |
| description | This study aimed at identifying genomic regions that affect nine pork quality traits in purebred and crossbred fatteners. A total of 259 fatteners represented by six purebreds/crosses were genotyped for 45556 SNP markers by Illumina Porcine SNP60 BeadChip. The following traits were recorded: glycogen potential (GP), glycogen content (GC), lactate content (LC), pH
, pH
, pH
, drip loss after 48 hours (DL
), colour lightness (
) and lean meat content (LMC). Multi-Locus Mixed Model methodology was applied to find associations between SNP markers and recorded traits. Several SNPs were found to be significantly associated with some pork quality traits: four SNPs (located on SSC7, SSC10 and SSC14) with GP, three SNPs (SSC10, SSC14) with GC, one SNP (SSC15) with DL
and one SNP with pH
Genetic variation explained by significant SNPs ranged from 7.6% to 9.1%. Moreover, some genes (e.g. CAPN10, ALDH5A1, PASK, SNITA1 and MYH7B) located in the close vicinity to significant markers are proposed to be candidate genes explaining the genetic background of the traits studied. |
| doi_str_mv | 10.2478/aoas-2024-0013 |
| format | Article |
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, pH
, pH
, drip loss after 48 hours (DL
), colour lightness (
) and lean meat content (LMC). Multi-Locus Mixed Model methodology was applied to find associations between SNP markers and recorded traits. Several SNPs were found to be significantly associated with some pork quality traits: four SNPs (located on SSC7, SSC10 and SSC14) with GP, three SNPs (SSC10, SSC14) with GC, one SNP (SSC15) with DL
and one SNP with pH
Genetic variation explained by significant SNPs ranged from 7.6% to 9.1%. Moreover, some genes (e.g. CAPN10, ALDH5A1, PASK, SNITA1 and MYH7B) located in the close vicinity to significant markers are proposed to be candidate genes explaining the genetic background of the traits studied.</description><identifier>ISSN: 2300-8733</identifier><identifier>ISSN: 1642-3402</identifier><identifier>EISSN: 2300-8733</identifier><identifier>DOI: 10.2478/aoas-2024-0013</identifier><language>eng</language><publisher>Kraków: Sciendo</publisher><subject>Animal populations ; Animals ; Calpain ; Genes ; Genetic diversity ; genetic markers ; Genome-wide association studies ; Genomes ; Glycogen ; Glycogens ; GWAS ; Hogs ; Humanities ; Meat ; Meat industry ; Meat processing ; Meat quality ; pig ; Population studies ; Pork ; Single-nucleotide polymorphism ; Swine</subject><ispartof>Annals of animal science, 2024-07, Vol.24 (3), p.767-777</ispartof><rights>2024. This work is published under http://creativecommons.org/licenses/by/4.0 (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c315t-906fd0587a9327ab2627d73a24062f20d5333f9cfb8ce3eac9fb759ace4bb5ff3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://sciendo.com/pdf/10.2478/aoas-2024-0013$$EPDF$$P50$$Gwalterdegruyter$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://sciendo.com/article/10.2478/aoas-2024-0013$$EHTML$$P50$$Gwalterdegruyter$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,27922,27923,75934,75935</link.rule.ids></links><search><creatorcontrib>Kamiński, Stanisław</creatorcontrib><creatorcontrib>Tarczyński, Krystian</creatorcontrib><creatorcontrib>Oleński, Kamil</creatorcontrib><creatorcontrib>Zybert, Andrzej</creatorcontrib><creatorcontrib>Sieczkowska, Halina</creatorcontrib><creatorcontrib>Krzęcio-Nieczyporuk, Elżbieta</creatorcontrib><creatorcontrib>Antosik, Katarzyna</creatorcontrib><creatorcontrib>Szwaczkowski, Tomasz</creatorcontrib><title>Genome-Wide Association Study for Meat Quality Traits in a Multi-Breed Pig Population</title><title>Annals of animal science</title><description>This study aimed at identifying genomic regions that affect nine pork quality traits in purebred and crossbred fatteners. A total of 259 fatteners represented by six purebreds/crosses were genotyped for 45556 SNP markers by Illumina Porcine SNP60 BeadChip. The following traits were recorded: glycogen potential (GP), glycogen content (GC), lactate content (LC), pH
, pH
, pH
, drip loss after 48 hours (DL
), colour lightness (
) and lean meat content (LMC). Multi-Locus Mixed Model methodology was applied to find associations between SNP markers and recorded traits. Several SNPs were found to be significantly associated with some pork quality traits: four SNPs (located on SSC7, SSC10 and SSC14) with GP, three SNPs (SSC10, SSC14) with GC, one SNP (SSC15) with DL
and one SNP with pH
Genetic variation explained by significant SNPs ranged from 7.6% to 9.1%. 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Tarczyński, Krystian ; Oleński, Kamil ; Zybert, Andrzej ; Sieczkowska, Halina ; Krzęcio-Nieczyporuk, Elżbieta ; Antosik, Katarzyna ; Szwaczkowski, Tomasz</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c315t-906fd0587a9327ab2627d73a24062f20d5333f9cfb8ce3eac9fb759ace4bb5ff3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Animal populations</topic><topic>Animals</topic><topic>Calpain</topic><topic>Genes</topic><topic>Genetic diversity</topic><topic>genetic markers</topic><topic>Genome-wide association studies</topic><topic>Genomes</topic><topic>Glycogen</topic><topic>Glycogens</topic><topic>GWAS</topic><topic>Hogs</topic><topic>Humanities</topic><topic>Meat</topic><topic>Meat industry</topic><topic>Meat processing</topic><topic>Meat quality</topic><topic>pig</topic><topic>Population studies</topic><topic>Pork</topic><topic>Single-nucleotide polymorphism</topic><topic>Swine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kamiński, Stanisław</creatorcontrib><creatorcontrib>Tarczyński, Krystian</creatorcontrib><creatorcontrib>Oleński, Kamil</creatorcontrib><creatorcontrib>Zybert, Andrzej</creatorcontrib><creatorcontrib>Sieczkowska, Halina</creatorcontrib><creatorcontrib>Krzęcio-Nieczyporuk, Elżbieta</creatorcontrib><creatorcontrib>Antosik, Katarzyna</creatorcontrib><creatorcontrib>Szwaczkowski, Tomasz</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Immunology Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>Agricultural Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Annals of animal science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kamiński, Stanisław</au><au>Tarczyński, Krystian</au><au>Oleński, Kamil</au><au>Zybert, Andrzej</au><au>Sieczkowska, Halina</au><au>Krzęcio-Nieczyporuk, Elżbieta</au><au>Antosik, Katarzyna</au><au>Szwaczkowski, Tomasz</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Association Study for Meat Quality Traits in a Multi-Breed Pig Population</atitle><jtitle>Annals of animal science</jtitle><date>2024-07-01</date><risdate>2024</risdate><volume>24</volume><issue>3</issue><spage>767</spage><epage>777</epage><pages>767-777</pages><issn>2300-8733</issn><issn>1642-3402</issn><eissn>2300-8733</eissn><abstract>This study aimed at identifying genomic regions that affect nine pork quality traits in purebred and crossbred fatteners. A total of 259 fatteners represented by six purebreds/crosses were genotyped for 45556 SNP markers by Illumina Porcine SNP60 BeadChip. The following traits were recorded: glycogen potential (GP), glycogen content (GC), lactate content (LC), pH
, pH
, pH
, drip loss after 48 hours (DL
), colour lightness (
) and lean meat content (LMC). Multi-Locus Mixed Model methodology was applied to find associations between SNP markers and recorded traits. Several SNPs were found to be significantly associated with some pork quality traits: four SNPs (located on SSC7, SSC10 and SSC14) with GP, three SNPs (SSC10, SSC14) with GC, one SNP (SSC15) with DL
and one SNP with pH
Genetic variation explained by significant SNPs ranged from 7.6% to 9.1%. Moreover, some genes (e.g. CAPN10, ALDH5A1, PASK, SNITA1 and MYH7B) located in the close vicinity to significant markers are proposed to be candidate genes explaining the genetic background of the traits studied.</abstract><cop>Kraków</cop><pub>Sciendo</pub><doi>10.2478/aoas-2024-0013</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Annals of animal science, 2024-07, Vol.24 (3), p.767-777 |
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| language | eng |
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| source | De Gruyter Open Access Journals; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Animal populations Animals Calpain Genes Genetic diversity genetic markers Genome-wide association studies Genomes Glycogen Glycogens GWAS Hogs Humanities Meat Meat industry Meat processing Meat quality pig Population studies Pork Single-nucleotide polymorphism Swine |
| title | Genome-Wide Association Study for Meat Quality Traits in a Multi-Breed Pig Population |
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