Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis
From a conservation standpoint, species that are managed without consideration of their population sizes and connectivity have the potential to be over‐exploited and/or incur population decline. The burrowing shrimp, Trypaea australiensis, is an important ecosystem engineer and fishery resource caug...
Gespeichert in:
| Veröffentlicht in: | Fisheries management and ecology 2024-06, Vol.31 (3), p.n/a |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | n/a |
|---|---|
| container_issue | 3 |
| container_start_page | |
| container_title | Fisheries management and ecology |
| container_volume | 31 |
| creator | Kirby, Renae L. Froehlich, Catheline Y. M. Greaves, Samuel Klanten, O. Selma Wong, Marian Y. L. |
| description | From a conservation standpoint, species that are managed without consideration of their population sizes and connectivity have the potential to be over‐exploited and/or incur population decline. The burrowing shrimp, Trypaea australiensis, is an important ecosystem engineer and fishery resource caught in large numbers for which population information is unknown for properly managing the species. Here, we determined the level of population structure of T. australiensis across three locations along the East Coast of New South Wales, Australia, using genome‐wide single nucleotide polymorphisms (SNPs) obtained through double digest Restriction‐site Associated DNA‐sequencing (ddRAD‐seq). Analysis of population structure, including pairwise Fst (−0.003 to −0.001), STRUCTURE (K = 2) and Discriminant Analysis of Principal Components (DAPC) showed no evidence of structure among locations. Our findings provide crucial preliminary population genetic data for a key cryptic species, that also suggests gene flow among sampling locations enables the management of fisheries throughout the study area as a single unit. |
| doi_str_mv | 10.1111/fme.12682 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_3050762032</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3050762032</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2922-26661034af1f3a9e20f8441aea21de71298b7d3d6d562ad5d7c452ce477c9a613</originalsourceid><addsrcrecordid>eNp1kE1Lw0AQhhdRsFYP_oMFT4Jp9yPZdI9SWhUqXip4W8b9oFvTJO4mSP59t8arc5nL8z4zvAjdUjKjaebuYGeUiQU7QxPKRZGxnJBzNCFSyEzK8uMSXcW4J4QIKuUEwQb0F24cbpu2r6DzTY1jF3rd9cFiX2OosT-0Teig7rDzcWfDgGNrtbfxlDv0BsddSMwD3oahBQsY-qSAyts6-niNLhxU0d787Sl6X6-2y-ds8_b0snzcZJpJxjImhKCE5-Co4yAtI26R5zTpGDW2pEwuPkvDjTCFYGAKU-q8YNrmZaklCMqn6G70tqH57m3s1L7pQ51OKk4KUgpGOEvU_Ujp0MQYrFNt-h3CoChRpwZValD9NpjY-cj--MoO_4Nq_boaE0ehm3MG</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3050762032</pqid></control><display><type>article</type><title>Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis</title><source>Access via Wiley Online Library</source><creator>Kirby, Renae L. ; Froehlich, Catheline Y. M. ; Greaves, Samuel ; Klanten, O. Selma ; Wong, Marian Y. L.</creator><creatorcontrib>Kirby, Renae L. ; Froehlich, Catheline Y. M. ; Greaves, Samuel ; Klanten, O. Selma ; Wong, Marian Y. L.</creatorcontrib><description>From a conservation standpoint, species that are managed without consideration of their population sizes and connectivity have the potential to be over‐exploited and/or incur population decline. The burrowing shrimp, Trypaea australiensis, is an important ecosystem engineer and fishery resource caught in large numbers for which population information is unknown for properly managing the species. Here, we determined the level of population structure of T. australiensis across three locations along the East Coast of New South Wales, Australia, using genome‐wide single nucleotide polymorphisms (SNPs) obtained through double digest Restriction‐site Associated DNA‐sequencing (ddRAD‐seq). Analysis of population structure, including pairwise Fst (−0.003 to −0.001), STRUCTURE (K = 2) and Discriminant Analysis of Principal Components (DAPC) showed no evidence of structure among locations. Our findings provide crucial preliminary population genetic data for a key cryptic species, that also suggests gene flow among sampling locations enables the management of fisheries throughout the study area as a single unit.</description><identifier>ISSN: 0969-997X</identifier><identifier>EISSN: 1365-2400</identifier><identifier>DOI: 10.1111/fme.12682</identifier><language>eng</language><publisher>Oxford: Wiley Subscription Services, Inc</publisher><subject>crustaceans ; Cryptic species ; Discriminant analysis ; DNA sequencing ; estuaries ; Fisheries ; Fisheries management ; Fishery management ; Fishery resources ; Gene flow ; genetics ; Genomes ; invertebrates ; Marine crustaceans ; Nucleotides ; Population decline ; Population genetics ; Population structure ; Shrimps ; Single-nucleotide polymorphism ; Trypaea australiensis</subject><ispartof>Fisheries management and ecology, 2024-06, Vol.31 (3), p.n/a</ispartof><rights>2024 The Authors. published by John Wiley & Sons Ltd.</rights><rights>2024. This article is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c2922-26661034af1f3a9e20f8441aea21de71298b7d3d6d562ad5d7c452ce477c9a613</cites><orcidid>0000-0002-8731-1367 ; 0000-0001-8665-7908 ; 0000-0001-7299-2991 ; 0000-0001-6296-4225 ; 0000-0001-6393-6453</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Ffme.12682$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Ffme.12682$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>315,781,785,1418,27929,27930,45579,45580</link.rule.ids></links><search><creatorcontrib>Kirby, Renae L.</creatorcontrib><creatorcontrib>Froehlich, Catheline Y. M.</creatorcontrib><creatorcontrib>Greaves, Samuel</creatorcontrib><creatorcontrib>Klanten, O. Selma</creatorcontrib><creatorcontrib>Wong, Marian Y. L.</creatorcontrib><title>Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis</title><title>Fisheries management and ecology</title><description>From a conservation standpoint, species that are managed without consideration of their population sizes and connectivity have the potential to be over‐exploited and/or incur population decline. The burrowing shrimp, Trypaea australiensis, is an important ecosystem engineer and fishery resource caught in large numbers for which population information is unknown for properly managing the species. Here, we determined the level of population structure of T. australiensis across three locations along the East Coast of New South Wales, Australia, using genome‐wide single nucleotide polymorphisms (SNPs) obtained through double digest Restriction‐site Associated DNA‐sequencing (ddRAD‐seq). Analysis of population structure, including pairwise Fst (−0.003 to −0.001), STRUCTURE (K = 2) and Discriminant Analysis of Principal Components (DAPC) showed no evidence of structure among locations. Our findings provide crucial preliminary population genetic data for a key cryptic species, that also suggests gene flow among sampling locations enables the management of fisheries throughout the study area as a single unit.</description><subject>crustaceans</subject><subject>Cryptic species</subject><subject>Discriminant analysis</subject><subject>DNA sequencing</subject><subject>estuaries</subject><subject>Fisheries</subject><subject>Fisheries management</subject><subject>Fishery management</subject><subject>Fishery resources</subject><subject>Gene flow</subject><subject>genetics</subject><subject>Genomes</subject><subject>invertebrates</subject><subject>Marine crustaceans</subject><subject>Nucleotides</subject><subject>Population decline</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Shrimps</subject><subject>Single-nucleotide polymorphism</subject><subject>Trypaea australiensis</subject><issn>0969-997X</issn><issn>1365-2400</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><recordid>eNp1kE1Lw0AQhhdRsFYP_oMFT4Jp9yPZdI9SWhUqXip4W8b9oFvTJO4mSP59t8arc5nL8z4zvAjdUjKjaebuYGeUiQU7QxPKRZGxnJBzNCFSyEzK8uMSXcW4J4QIKuUEwQb0F24cbpu2r6DzTY1jF3rd9cFiX2OosT-0Teig7rDzcWfDgGNrtbfxlDv0BsddSMwD3oahBQsY-qSAyts6-niNLhxU0d787Sl6X6-2y-ds8_b0snzcZJpJxjImhKCE5-Co4yAtI26R5zTpGDW2pEwuPkvDjTCFYGAKU-q8YNrmZaklCMqn6G70tqH57m3s1L7pQ51OKk4KUgpGOEvU_Ujp0MQYrFNt-h3CoChRpwZValD9NpjY-cj--MoO_4Nq_boaE0ehm3MG</recordid><startdate>202406</startdate><enddate>202406</enddate><creator>Kirby, Renae L.</creator><creator>Froehlich, Catheline Y. M.</creator><creator>Greaves, Samuel</creator><creator>Klanten, O. Selma</creator><creator>Wong, Marian Y. L.</creator><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>WIN</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7SN</scope><scope>7TN</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H98</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0002-8731-1367</orcidid><orcidid>https://orcid.org/0000-0001-8665-7908</orcidid><orcidid>https://orcid.org/0000-0001-7299-2991</orcidid><orcidid>https://orcid.org/0000-0001-6296-4225</orcidid><orcidid>https://orcid.org/0000-0001-6393-6453</orcidid></search><sort><creationdate>202406</creationdate><title>Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis</title><author>Kirby, Renae L. ; Froehlich, Catheline Y. M. ; Greaves, Samuel ; Klanten, O. Selma ; Wong, Marian Y. L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2922-26661034af1f3a9e20f8441aea21de71298b7d3d6d562ad5d7c452ce477c9a613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>crustaceans</topic><topic>Cryptic species</topic><topic>Discriminant analysis</topic><topic>DNA sequencing</topic><topic>estuaries</topic><topic>Fisheries</topic><topic>Fisheries management</topic><topic>Fishery management</topic><topic>Fishery resources</topic><topic>Gene flow</topic><topic>genetics</topic><topic>Genomes</topic><topic>invertebrates</topic><topic>Marine crustaceans</topic><topic>Nucleotides</topic><topic>Population decline</topic><topic>Population genetics</topic><topic>Population structure</topic><topic>Shrimps</topic><topic>Single-nucleotide polymorphism</topic><topic>Trypaea australiensis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kirby, Renae L.</creatorcontrib><creatorcontrib>Froehlich, Catheline Y. M.</creatorcontrib><creatorcontrib>Greaves, Samuel</creatorcontrib><creatorcontrib>Klanten, O. Selma</creatorcontrib><creatorcontrib>Wong, Marian Y. L.</creatorcontrib><collection>Wiley Online Library (Open Access Collection)</collection><collection>Wiley Online Library (Open Access Collection)</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Ecology Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Fisheries management and ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kirby, Renae L.</au><au>Froehlich, Catheline Y. M.</au><au>Greaves, Samuel</au><au>Klanten, O. Selma</au><au>Wong, Marian Y. L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis</atitle><jtitle>Fisheries management and ecology</jtitle><date>2024-06</date><risdate>2024</risdate><volume>31</volume><issue>3</issue><epage>n/a</epage><issn>0969-997X</issn><eissn>1365-2400</eissn><abstract>From a conservation standpoint, species that are managed without consideration of their population sizes and connectivity have the potential to be over‐exploited and/or incur population decline. The burrowing shrimp, Trypaea australiensis, is an important ecosystem engineer and fishery resource caught in large numbers for which population information is unknown for properly managing the species. Here, we determined the level of population structure of T. australiensis across three locations along the East Coast of New South Wales, Australia, using genome‐wide single nucleotide polymorphisms (SNPs) obtained through double digest Restriction‐site Associated DNA‐sequencing (ddRAD‐seq). Analysis of population structure, including pairwise Fst (−0.003 to −0.001), STRUCTURE (K = 2) and Discriminant Analysis of Principal Components (DAPC) showed no evidence of structure among locations. Our findings provide crucial preliminary population genetic data for a key cryptic species, that also suggests gene flow among sampling locations enables the management of fisheries throughout the study area as a single unit.</abstract><cop>Oxford</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1111/fme.12682</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-8731-1367</orcidid><orcidid>https://orcid.org/0000-0001-8665-7908</orcidid><orcidid>https://orcid.org/0000-0001-7299-2991</orcidid><orcidid>https://orcid.org/0000-0001-6296-4225</orcidid><orcidid>https://orcid.org/0000-0001-6393-6453</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0969-997X |
| ispartof | Fisheries management and ecology, 2024-06, Vol.31 (3), p.n/a |
| issn | 0969-997X 1365-2400 |
| language | eng |
| recordid | cdi_proquest_journals_3050762032 |
| source | Access via Wiley Online Library |
| subjects | crustaceans Cryptic species Discriminant analysis DNA sequencing estuaries Fisheries Fisheries management Fishery management Fishery resources Gene flow genetics Genomes invertebrates Marine crustaceans Nucleotides Population decline Population genetics Population structure Shrimps Single-nucleotide polymorphism Trypaea australiensis |
| title | Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-12T01%3A30%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Lack%20of%20population%20structure%20in%20an%20important%20fishery%20species%20of%20mud%20shrimp,%20Trypaea%20australiensis&rft.jtitle=Fisheries%20management%20and%20ecology&rft.au=Kirby,%20Renae%20L.&rft.date=2024-06&rft.volume=31&rft.issue=3&rft.epage=n/a&rft.issn=0969-997X&rft.eissn=1365-2400&rft_id=info:doi/10.1111/fme.12682&rft_dat=%3Cproquest_cross%3E3050762032%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3050762032&rft_id=info:pmid/&rfr_iscdi=true |