Biotechnological Potential of the Soil Microbiome
Molecular biological techniques and bioinformatic analysis were used to investigate the phylogenetic and functional diversity of the prokaryotic complex of soil microcosms. The dominant organisms of the hydrolytic community were different in the samples from different climatic zones. In the soils su...
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| Veröffentlicht in: | Microbiology (New York) 2024-04, Vol.93 (2), p.145-148 |
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| creator | Manucharova, N. A. Vlasova, A. P. Kovalenko, M. A. Ovchinnikova, E. A. Babenko, A. D. Teregulova, G. A. Uvarov, G. V. Stepanov, A. L. |
| description | Molecular biological techniques and bioinformatic analysis were used to investigate the phylogenetic and functional diversity of the prokaryotic complex of soil microcosms. The dominant organisms of the hydrolytic community were different in the samples from different climatic zones. In the soils subject to anthropogenic or abiogenic load, apart from decreased diversity and abundance of prokaryotes, the number of the genes marking the ability to degrade xenobiotics, as well as those encoding nitrogen conversion and metabolism of vitamins and cofactors, was found to increase. Under heavy oil contamination, the bacterial community was capable of nitrification; its role increased in the lower horizons of the soil profile. The patterns revealed in the work indicate high metabolic potential of the prokaryotic component of the studied soils. |
| doi_str_mv | 10.1134/S0026261723604335 |
| format | Article |
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A. ; Vlasova, A. P. ; Kovalenko, M. A. ; Ovchinnikova, E. A. ; Babenko, A. D. ; Teregulova, G. A. ; Uvarov, G. V. ; Stepanov, A. L.</creator><creatorcontrib>Manucharova, N. A. ; Vlasova, A. P. ; Kovalenko, M. A. ; Ovchinnikova, E. A. ; Babenko, A. D. ; Teregulova, G. A. ; Uvarov, G. V. ; Stepanov, A. L.</creatorcontrib><description>Molecular biological techniques and bioinformatic analysis were used to investigate the phylogenetic and functional diversity of the prokaryotic complex of soil microcosms. The dominant organisms of the hydrolytic community were different in the samples from different climatic zones. In the soils subject to anthropogenic or abiogenic load, apart from decreased diversity and abundance of prokaryotes, the number of the genes marking the ability to degrade xenobiotics, as well as those encoding nitrogen conversion and metabolism of vitamins and cofactors, was found to increase. Under heavy oil contamination, the bacterial community was capable of nitrification; its role increased in the lower horizons of the soil profile. The patterns revealed in the work indicate high metabolic potential of the prokaryotic component of the studied soils.</description><identifier>ISSN: 0026-2617</identifier><identifier>EISSN: 1608-3237</identifier><identifier>DOI: 10.1134/S0026261723604335</identifier><language>eng</language><publisher>Moscow: Pleiades Publishing</publisher><subject>bacterial communities ; bioinformatics ; Biomedical and Life Sciences ; Contamination ; functional diversity ; Life Sciences ; Medical Microbiology ; metabolism ; Microbiology ; Microbiomes ; Nitrification ; nitrogen ; oils ; Phylogeny ; Prokaryotes ; prokaryotic cells ; Short Communications ; Soil microorganisms ; Soil profiles ; Vitamins ; Xenobiotics</subject><ispartof>Microbiology (New York), 2024-04, Vol.93 (2), p.145-148</ispartof><rights>Pleiades Publishing, Ltd. 2024. 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D.</creatorcontrib><creatorcontrib>Teregulova, G. A.</creatorcontrib><creatorcontrib>Uvarov, G. V.</creatorcontrib><creatorcontrib>Stepanov, A. L.</creatorcontrib><title>Biotechnological Potential of the Soil Microbiome</title><title>Microbiology (New York)</title><addtitle>Microbiology</addtitle><description>Molecular biological techniques and bioinformatic analysis were used to investigate the phylogenetic and functional diversity of the prokaryotic complex of soil microcosms. The dominant organisms of the hydrolytic community were different in the samples from different climatic zones. In the soils subject to anthropogenic or abiogenic load, apart from decreased diversity and abundance of prokaryotes, the number of the genes marking the ability to degrade xenobiotics, as well as those encoding nitrogen conversion and metabolism of vitamins and cofactors, was found to increase. Under heavy oil contamination, the bacterial community was capable of nitrification; its role increased in the lower horizons of the soil profile. The patterns revealed in the work indicate high metabolic potential of the prokaryotic component of the studied soils.</description><subject>bacterial communities</subject><subject>bioinformatics</subject><subject>Biomedical and Life Sciences</subject><subject>Contamination</subject><subject>functional diversity</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>metabolism</subject><subject>Microbiology</subject><subject>Microbiomes</subject><subject>Nitrification</subject><subject>nitrogen</subject><subject>oils</subject><subject>Phylogeny</subject><subject>Prokaryotes</subject><subject>prokaryotic cells</subject><subject>Short Communications</subject><subject>Soil microorganisms</subject><subject>Soil profiles</subject><subject>Vitamins</subject><subject>Xenobiotics</subject><issn>0026-2617</issn><issn>1608-3237</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp1kE9LAzEQxYMoWKsfwNuCFy-rmcxmdnPU4j-oKFTPyzabtCnbTU22B7-9KRUExdPM8H5vmHmMnQO_AsDiesa5IEFQCiReIMoDNgLiVY4Cy0M22sn5Tj9mJzGuOOdSSDlicOv8YPSy951fON102Wua-8GlzttsWJps5l2XPTsd_Nz5tTllR7bpojn7rmP2fn_3NnnMpy8PT5Obaa6Rw5ADmbbgyhZUibKdC6utLuW8tQILbhuSRGQ0UlNiSUVTaS0VEMlWgUm4wjG73O_dBP-xNXGo1y5q03VNb_w21ggSpZKgIKEXv9CV34Y-XVcjRxBloSqZKNhT6ZMYg7H1Jrh1Ez5r4PUuxPpPiMkj9p6Y2H5hws_m_01fnrNxFw</recordid><startdate>20240401</startdate><enddate>20240401</enddate><creator>Manucharova, N. 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A.</creatorcontrib><creatorcontrib>Vlasova, A. P.</creatorcontrib><creatorcontrib>Kovalenko, M. A.</creatorcontrib><creatorcontrib>Ovchinnikova, E. A.</creatorcontrib><creatorcontrib>Babenko, A. D.</creatorcontrib><creatorcontrib>Teregulova, G. A.</creatorcontrib><creatorcontrib>Uvarov, G. V.</creatorcontrib><creatorcontrib>Stepanov, A. L.</creatorcontrib><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Microbiology (New York)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Manucharova, N. A.</au><au>Vlasova, A. P.</au><au>Kovalenko, M. A.</au><au>Ovchinnikova, E. A.</au><au>Babenko, A. D.</au><au>Teregulova, G. A.</au><au>Uvarov, G. V.</au><au>Stepanov, A. L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Biotechnological Potential of the Soil Microbiome</atitle><jtitle>Microbiology (New York)</jtitle><stitle>Microbiology</stitle><date>2024-04-01</date><risdate>2024</risdate><volume>93</volume><issue>2</issue><spage>145</spage><epage>148</epage><pages>145-148</pages><issn>0026-2617</issn><eissn>1608-3237</eissn><abstract>Molecular biological techniques and bioinformatic analysis were used to investigate the phylogenetic and functional diversity of the prokaryotic complex of soil microcosms. The dominant organisms of the hydrolytic community were different in the samples from different climatic zones. In the soils subject to anthropogenic or abiogenic load, apart from decreased diversity and abundance of prokaryotes, the number of the genes marking the ability to degrade xenobiotics, as well as those encoding nitrogen conversion and metabolism of vitamins and cofactors, was found to increase. 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| subjects | bacterial communities bioinformatics Biomedical and Life Sciences Contamination functional diversity Life Sciences Medical Microbiology metabolism Microbiology Microbiomes Nitrification nitrogen oils Phylogeny Prokaryotes prokaryotic cells Short Communications Soil microorganisms Soil profiles Vitamins Xenobiotics |
| title | Biotechnological Potential of the Soil Microbiome |
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