Independent statistical validation of the New Zealand Seafloor Community Classification
The New Zealand Seafloor Community Classification (NZSCC) is a national‐scale numerical community classification which depicts compositional turnover of 1716 taxa (demersal fish, reef fish, benthic invertebrates and macroalgae) classified into 75 groups representing seafloor communities. To ensure t...
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description | The New Zealand Seafloor Community Classification (NZSCC) is a national‐scale numerical community classification which depicts compositional turnover of 1716 taxa (demersal fish, reef fish, benthic invertebrates and macroalgae) classified into 75 groups representing seafloor communities. To ensure the continual use of the NZSCC for spatial planning and reporting, a robust maintenance framework must be set in place; key to this is being able to assess the ability of the classification to represent (discriminate between) different seafloor communities.
Here we describe an approach for validating the NZSCC using temporally independent evaluation data for demersal fish and benthic invertebrates (the latter sampled via a different method), which identifies whether the NZSCC represents different seafloor communities (i.e., assesses classification strength), evaluates the underlying statistical model, and considers heterogeneity in environmental coverage and statistical uncertainty. Additionally, the availability of abundance estimates for these evaluation datasets provides an opportunity to test whether the NZSCC—which was developed using presence‐absence data—can reflect abundance‐weighted seafloor communities.
The ANOSIM global R values (measuring classification strength) were 0.53 and 0.46 (and significant at the 1% level) for demersal fish and benthic invertebrates, respectively, indicating that the NZSCC groups define biologically distinctive environments.
The proportion of significant inter‐group differences were very high (95% and 97% for demersal fish and benthic invertebrates, respectively) suggesting NZSCC groups were distinct from each other in their taxonomic composition.
There were positive relationships between the evaluation datasets and the underlying statistical model. There was no evidence of these relationships being affected by the statistical uncertainty of the NZSCC.
NZSCC model validation metrics using abundance evaluation data were also moderately high (albeit lower than for presence‐absence for invertebrates) suggesting that the NZSCC, can at least in part, represent variation in abundance‐weighted communities. Results presented here suggest that the existing NZSCC is currently fit‐for‐purpose for informing management decisions. |
doi_str_mv | 10.1002/aqc.4114 |
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Here we describe an approach for validating the NZSCC using temporally independent evaluation data for demersal fish and benthic invertebrates (the latter sampled via a different method), which identifies whether the NZSCC represents different seafloor communities (i.e., assesses classification strength), evaluates the underlying statistical model, and considers heterogeneity in environmental coverage and statistical uncertainty. Additionally, the availability of abundance estimates for these evaluation datasets provides an opportunity to test whether the NZSCC—which was developed using presence‐absence data—can reflect abundance‐weighted seafloor communities.
The ANOSIM global R values (measuring classification strength) were 0.53 and 0.46 (and significant at the 1% level) for demersal fish and benthic invertebrates, respectively, indicating that the NZSCC groups define biologically distinctive environments.
The proportion of significant inter‐group differences were very high (95% and 97% for demersal fish and benthic invertebrates, respectively) suggesting NZSCC groups were distinct from each other in their taxonomic composition.
There were positive relationships between the evaluation datasets and the underlying statistical model. There was no evidence of these relationships being affected by the statistical uncertainty of the NZSCC.
NZSCC model validation metrics using abundance evaluation data were also moderately high (albeit lower than for presence‐absence for invertebrates) suggesting that the NZSCC, can at least in part, represent variation in abundance‐weighted communities. Results presented here suggest that the existing NZSCC is currently fit‐for‐purpose for informing management decisions.</description><identifier>ISSN: 1052-7613</identifier><identifier>EISSN: 1099-0755</identifier><identifier>DOI: 10.1002/aqc.4114</identifier><language>eng</language><publisher>Oxford: Wiley Subscription Services, Inc</publisher><subject>Abundance ; Algae ; Benthic fauna ; Benthos ; Classification ; Datasets ; Demersal fish ; demersal fish, benthic invertebrates ; Evaluation ; Fish ; gradient Forest model ; Heterogeneity ; Invertebrates ; Marine fishes ; Mathematical models ; NZSCC ; Ocean floor ; presence‐absence ; Reef fish ; Reef fishes ; Robustness (mathematics) ; spatial management, biodiversity ; Spatial planning ; Statistical models ; Uncertainty ; validating ; Zoobenthos</subject><ispartof>Aquatic conservation, 2024-03, Vol.34 (3), p.n/a</ispartof><rights>2024 The Authors. published by John Wiley & Sons Ltd.</rights><rights>2024. This article is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c2884-397b25457e60c7ca8f7b273825f1fb430f985002f95ebc77c25025dfdf9c12da3</cites><orcidid>0000-0002-9500-5204</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Faqc.4114$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Faqc.4114$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids></links><search><creatorcontrib>Stephenson, Fabrice</creatorcontrib><creatorcontrib>Tablada, Jordi</creatorcontrib><creatorcontrib>Rowden, Ashley A.</creatorcontrib><creatorcontrib>Bulmer, Richard</creatorcontrib><creatorcontrib>Bowden, David A.</creatorcontrib><creatorcontrib>Geange, Shane W.</creatorcontrib><title>Independent statistical validation of the New Zealand Seafloor Community Classification</title><title>Aquatic conservation</title><description>The New Zealand Seafloor Community Classification (NZSCC) is a national‐scale numerical community classification which depicts compositional turnover of 1716 taxa (demersal fish, reef fish, benthic invertebrates and macroalgae) classified into 75 groups representing seafloor communities. To ensure the continual use of the NZSCC for spatial planning and reporting, a robust maintenance framework must be set in place; key to this is being able to assess the ability of the classification to represent (discriminate between) different seafloor communities.
Here we describe an approach for validating the NZSCC using temporally independent evaluation data for demersal fish and benthic invertebrates (the latter sampled via a different method), which identifies whether the NZSCC represents different seafloor communities (i.e., assesses classification strength), evaluates the underlying statistical model, and considers heterogeneity in environmental coverage and statistical uncertainty. Additionally, the availability of abundance estimates for these evaluation datasets provides an opportunity to test whether the NZSCC—which was developed using presence‐absence data—can reflect abundance‐weighted seafloor communities.
The ANOSIM global R values (measuring classification strength) were 0.53 and 0.46 (and significant at the 1% level) for demersal fish and benthic invertebrates, respectively, indicating that the NZSCC groups define biologically distinctive environments.
The proportion of significant inter‐group differences were very high (95% and 97% for demersal fish and benthic invertebrates, respectively) suggesting NZSCC groups were distinct from each other in their taxonomic composition.
There were positive relationships between the evaluation datasets and the underlying statistical model. There was no evidence of these relationships being affected by the statistical uncertainty of the NZSCC.
NZSCC model validation metrics using abundance evaluation data were also moderately high (albeit lower than for presence‐absence for invertebrates) suggesting that the NZSCC, can at least in part, represent variation in abundance‐weighted communities. Results presented here suggest that the existing NZSCC is currently fit‐for‐purpose for informing management decisions.</description><subject>Abundance</subject><subject>Algae</subject><subject>Benthic fauna</subject><subject>Benthos</subject><subject>Classification</subject><subject>Datasets</subject><subject>Demersal fish</subject><subject>demersal fish, benthic invertebrates</subject><subject>Evaluation</subject><subject>Fish</subject><subject>gradient Forest model</subject><subject>Heterogeneity</subject><subject>Invertebrates</subject><subject>Marine fishes</subject><subject>Mathematical models</subject><subject>NZSCC</subject><subject>Ocean floor</subject><subject>presence‐absence</subject><subject>Reef fish</subject><subject>Reef fishes</subject><subject>Robustness (mathematics)</subject><subject>spatial management, biodiversity</subject><subject>Spatial planning</subject><subject>Statistical models</subject><subject>Uncertainty</subject><subject>validating</subject><subject>Zoobenthos</subject><issn>1052-7613</issn><issn>1099-0755</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><recordid>eNp1kEFLAzEQhYMoWKvgTwh48bI1yW42ybEsWgtFERXBS0izCaZsN22SWvrvzVqvXmbmwfdmmAfANUYTjBC5U1s9qTCuTsAIIyEKxCg9HWZKClbj8hxcxLhCCIka1yPwMe9bszG59AnGpJKLyWnVwW_VuTZL30NvYfoy8Mns4adRnepb-GqU7bwPsPHr9a536QCbTsXobDYPpktwZlUXzdVfH4P3h_u35rFYPM_mzXRRaMJ5VZSCLQmtKDM10kwrbrNmJSfUYrusSmQFp_ktK6hZasY0oYjQ1rZWaExaVY7BzXHvJvjtzsQkV34X-nxSEsEJZ3k5ydTtkdLBxxiMlZvg1iocJEZyiE3m2OQQW0aLI7p3nTn8y8npS_PL_wCBdW49</recordid><startdate>202403</startdate><enddate>202403</enddate><creator>Stephenson, Fabrice</creator><creator>Tablada, Jordi</creator><creator>Rowden, Ashley A.</creator><creator>Bulmer, Richard</creator><creator>Bowden, David A.</creator><creator>Geange, Shane W.</creator><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>WIN</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TN</scope><scope>7U9</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H94</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0002-9500-5204</orcidid></search><sort><creationdate>202403</creationdate><title>Independent statistical validation of the New Zealand Seafloor Community Classification</title><author>Stephenson, Fabrice ; Tablada, Jordi ; Rowden, Ashley A. ; Bulmer, Richard ; Bowden, David A. ; Geange, Shane W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2884-397b25457e60c7ca8f7b273825f1fb430f985002f95ebc77c25025dfdf9c12da3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Abundance</topic><topic>Algae</topic><topic>Benthic fauna</topic><topic>Benthos</topic><topic>Classification</topic><topic>Datasets</topic><topic>Demersal fish</topic><topic>demersal fish, benthic invertebrates</topic><topic>Evaluation</topic><topic>Fish</topic><topic>gradient Forest model</topic><topic>Heterogeneity</topic><topic>Invertebrates</topic><topic>Marine fishes</topic><topic>Mathematical models</topic><topic>NZSCC</topic><topic>Ocean floor</topic><topic>presence‐absence</topic><topic>Reef fish</topic><topic>Reef fishes</topic><topic>Robustness (mathematics)</topic><topic>spatial management, biodiversity</topic><topic>Spatial planning</topic><topic>Statistical models</topic><topic>Uncertainty</topic><topic>validating</topic><topic>Zoobenthos</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Stephenson, Fabrice</creatorcontrib><creatorcontrib>Tablada, Jordi</creatorcontrib><creatorcontrib>Rowden, Ashley A.</creatorcontrib><creatorcontrib>Bulmer, Richard</creatorcontrib><creatorcontrib>Bowden, David A.</creatorcontrib><creatorcontrib>Geange, Shane W.</creatorcontrib><collection>Wiley Online Library (Open Access Collection)</collection><collection>Wiley Online Library (Open Access Collection)</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Oceanic Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Aquatic conservation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Stephenson, Fabrice</au><au>Tablada, Jordi</au><au>Rowden, Ashley A.</au><au>Bulmer, Richard</au><au>Bowden, David A.</au><au>Geange, Shane W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Independent statistical validation of the New Zealand Seafloor Community Classification</atitle><jtitle>Aquatic conservation</jtitle><date>2024-03</date><risdate>2024</risdate><volume>34</volume><issue>3</issue><epage>n/a</epage><issn>1052-7613</issn><eissn>1099-0755</eissn><abstract>The New Zealand Seafloor Community Classification (NZSCC) is a national‐scale numerical community classification which depicts compositional turnover of 1716 taxa (demersal fish, reef fish, benthic invertebrates and macroalgae) classified into 75 groups representing seafloor communities. To ensure the continual use of the NZSCC for spatial planning and reporting, a robust maintenance framework must be set in place; key to this is being able to assess the ability of the classification to represent (discriminate between) different seafloor communities.
Here we describe an approach for validating the NZSCC using temporally independent evaluation data for demersal fish and benthic invertebrates (the latter sampled via a different method), which identifies whether the NZSCC represents different seafloor communities (i.e., assesses classification strength), evaluates the underlying statistical model, and considers heterogeneity in environmental coverage and statistical uncertainty. Additionally, the availability of abundance estimates for these evaluation datasets provides an opportunity to test whether the NZSCC—which was developed using presence‐absence data—can reflect abundance‐weighted seafloor communities.
The ANOSIM global R values (measuring classification strength) were 0.53 and 0.46 (and significant at the 1% level) for demersal fish and benthic invertebrates, respectively, indicating that the NZSCC groups define biologically distinctive environments.
The proportion of significant inter‐group differences were very high (95% and 97% for demersal fish and benthic invertebrates, respectively) suggesting NZSCC groups were distinct from each other in their taxonomic composition.
There were positive relationships between the evaluation datasets and the underlying statistical model. There was no evidence of these relationships being affected by the statistical uncertainty of the NZSCC.
NZSCC model validation metrics using abundance evaluation data were also moderately high (albeit lower than for presence‐absence for invertebrates) suggesting that the NZSCC, can at least in part, represent variation in abundance‐weighted communities. Results presented here suggest that the existing NZSCC is currently fit‐for‐purpose for informing management decisions.</abstract><cop>Oxford</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1002/aqc.4114</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-9500-5204</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Abundance Algae Benthic fauna Benthos Classification Datasets Demersal fish demersal fish, benthic invertebrates Evaluation Fish gradient Forest model Heterogeneity Invertebrates Marine fishes Mathematical models NZSCC Ocean floor presence‐absence Reef fish Reef fishes Robustness (mathematics) spatial management, biodiversity Spatial planning Statistical models Uncertainty validating Zoobenthos |
title | Independent statistical validation of the New Zealand Seafloor Community Classification |
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