In Silico Prediction of Antidiabetic Activity of Phytoconstituents of Pterocarpus Marsupium Targeting α-Amylase Enzyme
Background Diabetes is characterized by a metabolic imbalance of blood sugar levels. α-amylase enzyme hydrolyzed starch into glucose units. Current therapy has significant side effects. Current investigation of in silico antidiabetic evaluation of phytoconstituents of Pterocarpus marsupium targeting...
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creator | Danao, Kishor Kale, Shruti Rokde, Vijayshri Nandurkar, Deweshri Mahajan, Ujwala Dumore, Nitin Bendale, Atul R. Naphade, Vaishali Tatode, Amol |
description | Background Diabetes is characterized by a metabolic imbalance of blood sugar levels. α-amylase enzyme hydrolyzed starch into glucose units. Current therapy has significant side effects. Current investigation of in silico antidiabetic evaluation of phytoconstituents of Pterocarpus marsupium targeting α-amylase. Methods In silico studies were investigated to determine the binding affinity of phytoconstituents of Pterocarpus marsupium in additional with the crystal structure of α-amylase (PDB ID: 3BC9) with help of Pyrx in autodock vina software. Further, investigate the amino acid interaction residue and impacts on the inhibitory potential of the active phytoconstituents. Additionally, the pharmacokinetics and SwissADME and pkCSM were used as online servers for the toxic effects research. Further, studied the pocket region of amino acid for the binding of phytoconstituents using the Ramachandran plot. Result Molecular docking results proposed that pterostilbenes and liquirtigenin (-8.1 kcal/mol) had best docked against α-amylase as related to native ligand (-5.6 kcal/mol) and metformin (-5.3 kcal/mol). The active phytoconstituent has actively participated in interaction with the amino acid residue leads to blockage of α-amylase activity. Furthermore, the pharmacokinetic and In ADMET investigations, the phytoconstituents toxicological values are within allowable ranges. Conclusion The most promising outcome was revealed by the phytoconstituents of Pterocarpus marsupium that bind to α -amylase. However, it encourages the traditional practice of Pterocarpus marsupium and delivers vital information in drug development and clinical treatment. It promotes traditional approach of Pterocarpus marsupium and provides crucial knowledge for medical research and therapeutic care. |
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Current therapy has significant side effects. Current investigation of in silico antidiabetic evaluation of phytoconstituents of Pterocarpus marsupium targeting α-amylase. Methods In silico studies were investigated to determine the binding affinity of phytoconstituents of Pterocarpus marsupium in additional with the crystal structure of α-amylase (PDB ID: 3BC9) with help of Pyrx in autodock vina software. Further, investigate the amino acid interaction residue and impacts on the inhibitory potential of the active phytoconstituents. Additionally, the pharmacokinetics and SwissADME and pkCSM were used as online servers for the toxic effects research. Further, studied the pocket region of amino acid for the binding of phytoconstituents using the Ramachandran plot. Result Molecular docking results proposed that pterostilbenes and liquirtigenin (-8.1 kcal/mol) had best docked against α-amylase as related to native ligand (-5.6 kcal/mol) and metformin (-5.3 kcal/mol). The active phytoconstituent has actively participated in interaction with the amino acid residue leads to blockage of α-amylase activity. Furthermore, the pharmacokinetic and In ADMET investigations, the phytoconstituents toxicological values are within allowable ranges. Conclusion The most promising outcome was revealed by the phytoconstituents of Pterocarpus marsupium that bind to α -amylase. However, it encourages the traditional practice of Pterocarpus marsupium and delivers vital information in drug development and clinical treatment. It promotes traditional approach of Pterocarpus marsupium and provides crucial knowledge for medical research and therapeutic care.</description><identifier>ISSN: 0973-1245</identifier><identifier>EISSN: 2456-2602</identifier><identifier>DOI: 10.13005/bbra/3077</identifier><language>eng</language><publisher>Bhopal: Biosciences Biotechnology Research Asia</publisher><subject>Amino acids ; Amylases ; Antidiabetics ; Binding ; Blood levels ; Diabetes ; Diabetes mellitus ; Drug development ; Enzymes ; Glucose ; Hydrogen bonds ; Insulin ; Ligands ; Medical research ; Metabolism ; Metformin ; Molecular docking ; Molecular weight ; Pharmacokinetics ; Phytochemicals ; Protein kinase C ; Proteins ; Pterocarpus ; Pterocarpus marsupium ; Residues ; Side effects ; Skin diseases ; Toxicity ; Toxicology ; α-Amylase</subject><ispartof>Biosciences, biotechnology research Asia, 2023-03, Vol.20 (1), p.147-162</ispartof><rights>2023. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c997-2669591b7d820f8fe5e47482a4bef450b50d27812371045bac804b2b68a4bbc13</cites><orcidid>0000-0003-2205-2031 ; 0000-0001-7064-5339 ; 0000-0002-2340-1072 ; 0000-0001-6058-6857 ; 0000-0001-9437-6882 ; 0000-0001-5813-5125 ; 0000-0002-3219-0377 ; 0000-0002-6248-7710 ; 0000-0003-2830-1983</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids></links><search><creatorcontrib>Danao, Kishor</creatorcontrib><creatorcontrib>Kale, Shruti</creatorcontrib><creatorcontrib>Rokde, Vijayshri</creatorcontrib><creatorcontrib>Nandurkar, Deweshri</creatorcontrib><creatorcontrib>Mahajan, Ujwala</creatorcontrib><creatorcontrib>Dumore, Nitin</creatorcontrib><creatorcontrib>Bendale, Atul R.</creatorcontrib><creatorcontrib>Naphade, Vaishali</creatorcontrib><creatorcontrib>Tatode, Amol</creatorcontrib><title>In Silico Prediction of Antidiabetic Activity of Phytoconstituents of Pterocarpus Marsupium Targeting α-Amylase Enzyme</title><title>Biosciences, biotechnology research Asia</title><description>Background Diabetes is characterized by a metabolic imbalance of blood sugar levels. α-amylase enzyme hydrolyzed starch into glucose units. Current therapy has significant side effects. Current investigation of in silico antidiabetic evaluation of phytoconstituents of Pterocarpus marsupium targeting α-amylase. Methods In silico studies were investigated to determine the binding affinity of phytoconstituents of Pterocarpus marsupium in additional with the crystal structure of α-amylase (PDB ID: 3BC9) with help of Pyrx in autodock vina software. Further, investigate the amino acid interaction residue and impacts on the inhibitory potential of the active phytoconstituents. Additionally, the pharmacokinetics and SwissADME and pkCSM were used as online servers for the toxic effects research. Further, studied the pocket region of amino acid for the binding of phytoconstituents using the Ramachandran plot. Result Molecular docking results proposed that pterostilbenes and liquirtigenin (-8.1 kcal/mol) had best docked against α-amylase as related to native ligand (-5.6 kcal/mol) and metformin (-5.3 kcal/mol). The active phytoconstituent has actively participated in interaction with the amino acid residue leads to blockage of α-amylase activity. Furthermore, the pharmacokinetic and In ADMET investigations, the phytoconstituents toxicological values are within allowable ranges. Conclusion The most promising outcome was revealed by the phytoconstituents of Pterocarpus marsupium that bind to α -amylase. However, it encourages the traditional practice of Pterocarpus marsupium and delivers vital information in drug development and clinical treatment. It promotes traditional approach of Pterocarpus marsupium and provides crucial knowledge for medical research and therapeutic care.</description><subject>Amino acids</subject><subject>Amylases</subject><subject>Antidiabetics</subject><subject>Binding</subject><subject>Blood levels</subject><subject>Diabetes</subject><subject>Diabetes mellitus</subject><subject>Drug development</subject><subject>Enzymes</subject><subject>Glucose</subject><subject>Hydrogen bonds</subject><subject>Insulin</subject><subject>Ligands</subject><subject>Medical research</subject><subject>Metabolism</subject><subject>Metformin</subject><subject>Molecular docking</subject><subject>Molecular weight</subject><subject>Pharmacokinetics</subject><subject>Phytochemicals</subject><subject>Protein kinase C</subject><subject>Proteins</subject><subject>Pterocarpus</subject><subject>Pterocarpus marsupium</subject><subject>Residues</subject><subject>Side effects</subject><subject>Skin diseases</subject><subject>Toxicity</subject><subject>Toxicology</subject><subject>α-Amylase</subject><issn>0973-1245</issn><issn>2456-2602</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNotkMtKAzEUhoMoWGo3PkHAnTD2JHNJshxK1ULFgt0PSZqpKZ1JTTLK-Fa-iM_ktHV14Dv_ufAhdEvggaQA-VQpL6cpMHaBRjTLi4QWQC_RCARLEzKQazQJYQcAFAQwQkboa9HiN7u32uGVNxuro3UtdjUu22g3VioTrcblgD9t7I-N1XsfnXZtiDZ2po3hBKPxTkt_6AJ-kT50B9s1eC39dphvt_j3Jymbfi-DwfP2u2_MDbqq5T6YyX8do_XjfD17TpavT4tZuUy0EGz4vxC5IIptOIWa1yY3Gcs4lZkydZaDymFDGSc0ZQSyXEnNIVNUFXxIKE3SMbo7rz1499GZEKud63w7XKyoKDjnqRDZkLo_p7R3IXhTVwdvG-n7ikB1Ulsd1VZHtekfaoBt8g</recordid><startdate>20230330</startdate><enddate>20230330</enddate><creator>Danao, Kishor</creator><creator>Kale, Shruti</creator><creator>Rokde, Vijayshri</creator><creator>Nandurkar, Deweshri</creator><creator>Mahajan, Ujwala</creator><creator>Dumore, Nitin</creator><creator>Bendale, Atul R.</creator><creator>Naphade, Vaishali</creator><creator>Tatode, Amol</creator><general>Biosciences Biotechnology Research Asia</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P5Z</scope><scope>P62</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><orcidid>https://orcid.org/0000-0003-2205-2031</orcidid><orcidid>https://orcid.org/0000-0001-7064-5339</orcidid><orcidid>https://orcid.org/0000-0002-2340-1072</orcidid><orcidid>https://orcid.org/0000-0001-6058-6857</orcidid><orcidid>https://orcid.org/0000-0001-9437-6882</orcidid><orcidid>https://orcid.org/0000-0001-5813-5125</orcidid><orcidid>https://orcid.org/0000-0002-3219-0377</orcidid><orcidid>https://orcid.org/0000-0002-6248-7710</orcidid><orcidid>https://orcid.org/0000-0003-2830-1983</orcidid></search><sort><creationdate>20230330</creationdate><title>In Silico Prediction of Antidiabetic Activity of Phytoconstituents of Pterocarpus Marsupium Targeting α-Amylase Enzyme</title><author>Danao, Kishor ; Kale, Shruti ; Rokde, Vijayshri ; Nandurkar, Deweshri ; Mahajan, Ujwala ; Dumore, Nitin ; Bendale, Atul R. ; Naphade, Vaishali ; Tatode, Amol</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c997-2669591b7d820f8fe5e47482a4bef450b50d27812371045bac804b2b68a4bbc13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Amino acids</topic><topic>Amylases</topic><topic>Antidiabetics</topic><topic>Binding</topic><topic>Blood levels</topic><topic>Diabetes</topic><topic>Diabetes mellitus</topic><topic>Drug development</topic><topic>Enzymes</topic><topic>Glucose</topic><topic>Hydrogen bonds</topic><topic>Insulin</topic><topic>Ligands</topic><topic>Medical research</topic><topic>Metabolism</topic><topic>Metformin</topic><topic>Molecular docking</topic><topic>Molecular weight</topic><topic>Pharmacokinetics</topic><topic>Phytochemicals</topic><topic>Protein kinase C</topic><topic>Proteins</topic><topic>Pterocarpus</topic><topic>Pterocarpus marsupium</topic><topic>Residues</topic><topic>Side effects</topic><topic>Skin diseases</topic><topic>Toxicity</topic><topic>Toxicology</topic><topic>α-Amylase</topic><toplevel>online_resources</toplevel><creatorcontrib>Danao, Kishor</creatorcontrib><creatorcontrib>Kale, Shruti</creatorcontrib><creatorcontrib>Rokde, Vijayshri</creatorcontrib><creatorcontrib>Nandurkar, Deweshri</creatorcontrib><creatorcontrib>Mahajan, Ujwala</creatorcontrib><creatorcontrib>Dumore, Nitin</creatorcontrib><creatorcontrib>Bendale, Atul R.</creatorcontrib><creatorcontrib>Naphade, Vaishali</creatorcontrib><creatorcontrib>Tatode, Amol</creatorcontrib><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Biosciences, biotechnology research Asia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Danao, Kishor</au><au>Kale, Shruti</au><au>Rokde, Vijayshri</au><au>Nandurkar, Deweshri</au><au>Mahajan, Ujwala</au><au>Dumore, Nitin</au><au>Bendale, Atul R.</au><au>Naphade, Vaishali</au><au>Tatode, Amol</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>In Silico Prediction of Antidiabetic Activity of Phytoconstituents of Pterocarpus Marsupium Targeting α-Amylase Enzyme</atitle><jtitle>Biosciences, biotechnology research Asia</jtitle><date>2023-03-30</date><risdate>2023</risdate><volume>20</volume><issue>1</issue><spage>147</spage><epage>162</epage><pages>147-162</pages><issn>0973-1245</issn><eissn>2456-2602</eissn><abstract>Background Diabetes is characterized by a metabolic imbalance of blood sugar levels. α-amylase enzyme hydrolyzed starch into glucose units. Current therapy has significant side effects. Current investigation of in silico antidiabetic evaluation of phytoconstituents of Pterocarpus marsupium targeting α-amylase. Methods In silico studies were investigated to determine the binding affinity of phytoconstituents of Pterocarpus marsupium in additional with the crystal structure of α-amylase (PDB ID: 3BC9) with help of Pyrx in autodock vina software. Further, investigate the amino acid interaction residue and impacts on the inhibitory potential of the active phytoconstituents. Additionally, the pharmacokinetics and SwissADME and pkCSM were used as online servers for the toxic effects research. Further, studied the pocket region of amino acid for the binding of phytoconstituents using the Ramachandran plot. Result Molecular docking results proposed that pterostilbenes and liquirtigenin (-8.1 kcal/mol) had best docked against α-amylase as related to native ligand (-5.6 kcal/mol) and metformin (-5.3 kcal/mol). The active phytoconstituent has actively participated in interaction with the amino acid residue leads to blockage of α-amylase activity. Furthermore, the pharmacokinetic and In ADMET investigations, the phytoconstituents toxicological values are within allowable ranges. Conclusion The most promising outcome was revealed by the phytoconstituents of Pterocarpus marsupium that bind to α -amylase. However, it encourages the traditional practice of Pterocarpus marsupium and delivers vital information in drug development and clinical treatment. It promotes traditional approach of Pterocarpus marsupium and provides crucial knowledge for medical research and therapeutic care.</abstract><cop>Bhopal</cop><pub>Biosciences Biotechnology Research Asia</pub><doi>10.13005/bbra/3077</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0003-2205-2031</orcidid><orcidid>https://orcid.org/0000-0001-7064-5339</orcidid><orcidid>https://orcid.org/0000-0002-2340-1072</orcidid><orcidid>https://orcid.org/0000-0001-6058-6857</orcidid><orcidid>https://orcid.org/0000-0001-9437-6882</orcidid><orcidid>https://orcid.org/0000-0001-5813-5125</orcidid><orcidid>https://orcid.org/0000-0002-3219-0377</orcidid><orcidid>https://orcid.org/0000-0002-6248-7710</orcidid><orcidid>https://orcid.org/0000-0003-2830-1983</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Amylases Antidiabetics Binding Blood levels Diabetes Diabetes mellitus Drug development Enzymes Glucose Hydrogen bonds Insulin Ligands Medical research Metabolism Metformin Molecular docking Molecular weight Pharmacokinetics Phytochemicals Protein kinase C Proteins Pterocarpus Pterocarpus marsupium Residues Side effects Skin diseases Toxicity Toxicology α-Amylase |
title | In Silico Prediction of Antidiabetic Activity of Phytoconstituents of Pterocarpus Marsupium Targeting α-Amylase Enzyme |
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