Determination of the genetic diversity and population structure of Vaccinium uliginosum in Northeast China based on the chloroplast matK gene and EST-SSRseq molecular markers
Vaccinium uliginosum Linn. is an important wild fruit resource in China. It is primarily distributed throughout the forest regions of Da Xing’an, Xiao Xing’an, and Changbai Mountains. However, to the best of our knowledge, its genetic diversity and structure have not been reported yet. In this study...
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| Veröffentlicht in: | Genetic resources and crop evolution 2024-03, Vol.71 (3), p.1035-1052 |
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| container_title | Genetic resources and crop evolution |
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| creator | Yang, Haobo Chen, Jiazhuo Wang, Yu Tian, Xin Zheng, Yuhang Jin, Zhenling Hao, Jia Xue, Yujian Ding, Shaoyu Zong, Chengwen |
| description | Vaccinium uliginosum
Linn. is an important wild fruit resource in China. It is primarily distributed throughout the forest regions of Da Xing’an, Xiao Xing’an, and Changbai Mountains. However, to the best of our knowledge, its genetic diversity and structure have not been reported yet. In this study, 378 wild
V. uliginosum
samples from 12 different populations were analyzed for genetic diversity and structure using chloroplast
mat
K and expressed sequence tag-derived simple sequence repeat high-throughput sequencing (EST-SSRseq) molecular markers. The results indicated that the level of genetic diversity in the natural populations of Chinese
V. uliginosum
was low, genetic variation was noted among the populations, and genetic differentiation among the populations was not apparent. Based on STRUCTURE analysis, the 12 analyzed populations were divided into two subgroups, Da Xing’an and Changbai Mountains, and only a small amount of gene exchange was observed between these subgroups. Geographical isolation and asexual reproduction were the primary reasons for the low genetic diversity. Thus, a combination of in situ protection and artificial domestic cultivation may help protect wild
V. uliginosum
. |
| doi_str_mv | 10.1007/s10722-023-01675-9 |
| format | Article |
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Linn. is an important wild fruit resource in China. It is primarily distributed throughout the forest regions of Da Xing’an, Xiao Xing’an, and Changbai Mountains. However, to the best of our knowledge, its genetic diversity and structure have not been reported yet. In this study, 378 wild
V. uliginosum
samples from 12 different populations were analyzed for genetic diversity and structure using chloroplast
mat
K and expressed sequence tag-derived simple sequence repeat high-throughput sequencing (EST-SSRseq) molecular markers. The results indicated that the level of genetic diversity in the natural populations of Chinese
V. uliginosum
was low, genetic variation was noted among the populations, and genetic differentiation among the populations was not apparent. Based on STRUCTURE analysis, the 12 analyzed populations were divided into two subgroups, Da Xing’an and Changbai Mountains, and only a small amount of gene exchange was observed between these subgroups. Geographical isolation and asexual reproduction were the primary reasons for the low genetic diversity. Thus, a combination of in situ protection and artificial domestic cultivation may help protect wild
V. uliginosum
.</description><identifier>ISSN: 0925-9864</identifier><identifier>EISSN: 1573-5109</identifier><identifier>DOI: 10.1007/s10722-023-01675-9</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agriculture ; Asexual reproduction ; Biomedical and Life Sciences ; Chloroplasts ; Expressed sequence tags ; Genetic diversity ; Geographical isolation ; Life Sciences ; MatK gene ; Mountains ; Natural populations ; Next-generation sequencing ; Plant Genetics and Genomics ; Plant Physiology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; Population genetics ; Population structure ; Populations ; Research Article ; Structural analysis ; Subgroups ; Vaccinium uliginosum</subject><ispartof>Genetic resources and crop evolution, 2024-03, Vol.71 (3), p.1035-1052</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c270t-968e73941c2b7c6f70136dbb3feba67cddfff9d8e28d2cdac45dd56484439f713</cites><orcidid>0000-0003-1722-5938</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10722-023-01675-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10722-023-01675-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Yang, Haobo</creatorcontrib><creatorcontrib>Chen, Jiazhuo</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Tian, Xin</creatorcontrib><creatorcontrib>Zheng, Yuhang</creatorcontrib><creatorcontrib>Jin, Zhenling</creatorcontrib><creatorcontrib>Hao, Jia</creatorcontrib><creatorcontrib>Xue, Yujian</creatorcontrib><creatorcontrib>Ding, Shaoyu</creatorcontrib><creatorcontrib>Zong, Chengwen</creatorcontrib><title>Determination of the genetic diversity and population structure of Vaccinium uliginosum in Northeast China based on the chloroplast matK gene and EST-SSRseq molecular markers</title><title>Genetic resources and crop evolution</title><addtitle>Genet Resour Crop Evol</addtitle><description>Vaccinium uliginosum
Linn. is an important wild fruit resource in China. It is primarily distributed throughout the forest regions of Da Xing’an, Xiao Xing’an, and Changbai Mountains. However, to the best of our knowledge, its genetic diversity and structure have not been reported yet. In this study, 378 wild
V. uliginosum
samples from 12 different populations were analyzed for genetic diversity and structure using chloroplast
mat
K and expressed sequence tag-derived simple sequence repeat high-throughput sequencing (EST-SSRseq) molecular markers. The results indicated that the level of genetic diversity in the natural populations of Chinese
V. uliginosum
was low, genetic variation was noted among the populations, and genetic differentiation among the populations was not apparent. Based on STRUCTURE analysis, the 12 analyzed populations were divided into two subgroups, Da Xing’an and Changbai Mountains, and only a small amount of gene exchange was observed between these subgroups. Geographical isolation and asexual reproduction were the primary reasons for the low genetic diversity. Thus, a combination of in situ protection and artificial domestic cultivation may help protect wild
V. uliginosum
.</description><subject>Agriculture</subject><subject>Asexual reproduction</subject><subject>Biomedical and Life Sciences</subject><subject>Chloroplasts</subject><subject>Expressed sequence tags</subject><subject>Genetic diversity</subject><subject>Geographical isolation</subject><subject>Life Sciences</subject><subject>MatK gene</subject><subject>Mountains</subject><subject>Natural populations</subject><subject>Next-generation sequencing</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Populations</subject><subject>Research Article</subject><subject>Structural analysis</subject><subject>Subgroups</subject><subject>Vaccinium uliginosum</subject><issn>0925-9864</issn><issn>1573-5109</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kc1uHCEQhJEVS97YeYGckHyeBJgfhmO0tpMoViJ5bV8RA80uziyMgYnkl_Izht2xlFtOjZqq-loqhD5S8okSwj8nSjhjFWF1RWjH20qcoBVteV21lIh3aEUEK8u-a87Q-5SeCCGCd_0KvV5Bhrh3XmUXPA4W5x3gLXjITmPj_kBMLr9g5Q2ewjSPiy7lOOs8Rzg4HpXWzrt5j-fRbZ0PqTydxz9DLGEqZbzeFQAeVAKDi_uA0LsxxDCNh--9yj-OzCPmenNfbTZ3CZ7xPoygCzMWSfxdTrlAp1aNCT68zXP0cHN9v_5W3f76-n395bbSjJNcia4HXouGajZw3VlOaN2ZYagtDKrj2hhrrTA9sN4wbZRuWmParumbphaW0_ocXS65UwzPM6Qsn8IcfUFKJhjtWUNoX1RsUekYUopg5RRdufRFUiIPvcilF1l6kcdepCimejGlIvZbiP-i_-P6C43LlR8</recordid><startdate>20240301</startdate><enddate>20240301</enddate><creator>Yang, Haobo</creator><creator>Chen, Jiazhuo</creator><creator>Wang, Yu</creator><creator>Tian, Xin</creator><creator>Zheng, Yuhang</creator><creator>Jin, Zhenling</creator><creator>Hao, Jia</creator><creator>Xue, Yujian</creator><creator>Ding, Shaoyu</creator><creator>Zong, Chengwen</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0003-1722-5938</orcidid></search><sort><creationdate>20240301</creationdate><title>Determination of the genetic diversity and population structure of Vaccinium uliginosum in Northeast China based on the chloroplast matK gene and EST-SSRseq molecular markers</title><author>Yang, Haobo ; Chen, Jiazhuo ; Wang, Yu ; Tian, Xin ; Zheng, Yuhang ; Jin, Zhenling ; Hao, Jia ; Xue, Yujian ; Ding, Shaoyu ; Zong, Chengwen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c270t-968e73941c2b7c6f70136dbb3feba67cddfff9d8e28d2cdac45dd56484439f713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Agriculture</topic><topic>Asexual reproduction</topic><topic>Biomedical and Life Sciences</topic><topic>Chloroplasts</topic><topic>Expressed sequence tags</topic><topic>Genetic diversity</topic><topic>Geographical isolation</topic><topic>Life Sciences</topic><topic>MatK gene</topic><topic>Mountains</topic><topic>Natural populations</topic><topic>Next-generation sequencing</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Population genetics</topic><topic>Population structure</topic><topic>Populations</topic><topic>Research Article</topic><topic>Structural analysis</topic><topic>Subgroups</topic><topic>Vaccinium uliginosum</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Haobo</creatorcontrib><creatorcontrib>Chen, Jiazhuo</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Tian, Xin</creatorcontrib><creatorcontrib>Zheng, Yuhang</creatorcontrib><creatorcontrib>Jin, Zhenling</creatorcontrib><creatorcontrib>Hao, Jia</creatorcontrib><creatorcontrib>Xue, Yujian</creatorcontrib><creatorcontrib>Ding, Shaoyu</creatorcontrib><creatorcontrib>Zong, Chengwen</creatorcontrib><collection>CrossRef</collection><jtitle>Genetic resources and crop evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yang, Haobo</au><au>Chen, Jiazhuo</au><au>Wang, Yu</au><au>Tian, Xin</au><au>Zheng, Yuhang</au><au>Jin, Zhenling</au><au>Hao, Jia</au><au>Xue, Yujian</au><au>Ding, Shaoyu</au><au>Zong, Chengwen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Determination of the genetic diversity and population structure of Vaccinium uliginosum in Northeast China based on the chloroplast matK gene and EST-SSRseq molecular markers</atitle><jtitle>Genetic resources and crop evolution</jtitle><stitle>Genet Resour Crop Evol</stitle><date>2024-03-01</date><risdate>2024</risdate><volume>71</volume><issue>3</issue><spage>1035</spage><epage>1052</epage><pages>1035-1052</pages><issn>0925-9864</issn><eissn>1573-5109</eissn><abstract>Vaccinium uliginosum
Linn. is an important wild fruit resource in China. It is primarily distributed throughout the forest regions of Da Xing’an, Xiao Xing’an, and Changbai Mountains. However, to the best of our knowledge, its genetic diversity and structure have not been reported yet. In this study, 378 wild
V. uliginosum
samples from 12 different populations were analyzed for genetic diversity and structure using chloroplast
mat
K and expressed sequence tag-derived simple sequence repeat high-throughput sequencing (EST-SSRseq) molecular markers. The results indicated that the level of genetic diversity in the natural populations of Chinese
V. uliginosum
was low, genetic variation was noted among the populations, and genetic differentiation among the populations was not apparent. Based on STRUCTURE analysis, the 12 analyzed populations were divided into two subgroups, Da Xing’an and Changbai Mountains, and only a small amount of gene exchange was observed between these subgroups. Geographical isolation and asexual reproduction were the primary reasons for the low genetic diversity. Thus, a combination of in situ protection and artificial domestic cultivation may help protect wild
V. uliginosum
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| subjects | Agriculture Asexual reproduction Biomedical and Life Sciences Chloroplasts Expressed sequence tags Genetic diversity Geographical isolation Life Sciences MatK gene Mountains Natural populations Next-generation sequencing Plant Genetics and Genomics Plant Physiology Plant Sciences Plant Systematics/Taxonomy/Biogeography Population genetics Population structure Populations Research Article Structural analysis Subgroups Vaccinium uliginosum |
| title | Determination of the genetic diversity and population structure of Vaccinium uliginosum in Northeast China based on the chloroplast matK gene and EST-SSRseq molecular markers |
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