Identification and validation of prognostic genes and immune landscape signatures based on a fatty acid oxidation‑related risk score model in glioma
Fatty acid oxidation (FAO) plays a crucial role in glioma metabolism and its interaction with the immune microenvironment. The aim of the present study was to investigate the relationship between FAO-related genes and glioma by constructing gene clusters using a glioma cohort. A total of 287 differe...
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Veröffentlicht in: | Oncology letters 2024-02, Vol.27 (2), p.88, Article 88 |
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description | Fatty acid oxidation (FAO) plays a crucial role in glioma metabolism and its interaction with the immune microenvironment. The aim of the present study was to investigate the relationship between FAO-related genes and glioma by constructing gene clusters using a glioma cohort. A total of 287 differentially expressed genes related to FAO were identified and the top 50 genes were selected based on their P-values. Subsequently, patients were classified into two distinct gene subtypes (A and B) based on these genes. Scores for each patient were calculated using the 50 genes and the patients were divided into the high and low-score groups accordingly. Patients in subtype B exhibited higher tumor grades and poor prognostic factors such as older age and worse survival rates. The high-score subgroup had unfavorable indicators, including isocitrate dehydrogenase 1 wild-type, high tumor grade and 1p19q non-codeleted, while immune checkpoint expression was generally higher in the high-score subgroup. The constructed scoring model was validated using an external dataset, and the tissue inhibitor of metalloproteinase 1 gene was identified through protein interaction analysis, suggesting its potential involvement in glioma malignancy and promotion of glioblastoma proliferation. In conclusion, FAO-related genes may contribute to tumor development through immune mechanisms and the present study may provide novel insights for potential therapeutic strategies in glioma treatment. |
doi_str_mv | 10.3892/ol.2024.14222 |
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The aim of the present study was to investigate the relationship between FAO-related genes and glioma by constructing gene clusters using a glioma cohort. A total of 287 differentially expressed genes related to FAO were identified and the top 50 genes were selected based on their P-values. Subsequently, patients were classified into two distinct gene subtypes (A and B) based on these genes. Scores for each patient were calculated using the 50 genes and the patients were divided into the high and low-score groups accordingly. Patients in subtype B exhibited higher tumor grades and poor prognostic factors such as older age and worse survival rates. The high-score subgroup had unfavorable indicators, including isocitrate dehydrogenase 1 wild-type, high tumor grade and 1p19q non-codeleted, while immune checkpoint expression was generally higher in the high-score subgroup. The constructed scoring model was validated using an external dataset, and the tissue inhibitor of metalloproteinase 1 gene was identified through protein interaction analysis, suggesting its potential involvement in glioma malignancy and promotion of glioblastoma proliferation. In conclusion, FAO-related genes may contribute to tumor development through immune mechanisms and the present study may provide novel insights for potential therapeutic strategies in glioma treatment.</description><identifier>ISSN: 1792-1074</identifier><identifier>EISSN: 1792-1082</identifier><identifier>DOI: 10.3892/ol.2024.14222</identifier><identifier>PMID: 38249808</identifier><language>eng</language><publisher>Greece: Spandidos Publications</publisher><subject>Brain cancer ; Cancer ; Cancer therapies ; Cluster analysis ; Datasets ; DNA methylation ; Fatty acids ; Gene expression ; Genes ; Genetic aspects ; Genomes ; Genomics ; Glioma ; Gliomas ; Immunotherapy ; Kinases ; Medical prognosis ; Metabolism ; Oxidation ; Oxidation-reduction reaction ; Proteins ; Risk factors ; Survival analysis ; Tumors</subject><ispartof>Oncology letters, 2024-02, Vol.27 (2), p.88, Article 88</ispartof><rights>Copyright: © Guo et al.</rights><rights>COPYRIGHT 2024 Spandidos Publications</rights><rights>Copyright Spandidos Publications UK Ltd. 2024</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c414t-9a70f0947fe4e15d26371948ecfeaca167425d4a3483744522dbfc673fe0fb293</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38249808$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Guo, Fangzhou</creatorcontrib><creatorcontrib>Ling, Guoyuan</creatorcontrib><creatorcontrib>Zhai, Zhenzhu</creatorcontrib><creatorcontrib>Lei, Yi</creatorcontrib><creatorcontrib>Mo, Ligen</creatorcontrib><creatorcontrib>Piao, Haozhe</creatorcontrib><title>Identification and validation of prognostic genes and immune landscape signatures based on a fatty acid oxidation‑related risk score model in glioma</title><title>Oncology letters</title><addtitle>Oncol Lett</addtitle><description>Fatty acid oxidation (FAO) plays a crucial role in glioma metabolism and its interaction with the immune microenvironment. The aim of the present study was to investigate the relationship between FAO-related genes and glioma by constructing gene clusters using a glioma cohort. A total of 287 differentially expressed genes related to FAO were identified and the top 50 genes were selected based on their P-values. Subsequently, patients were classified into two distinct gene subtypes (A and B) based on these genes. Scores for each patient were calculated using the 50 genes and the patients were divided into the high and low-score groups accordingly. Patients in subtype B exhibited higher tumor grades and poor prognostic factors such as older age and worse survival rates. The high-score subgroup had unfavorable indicators, including isocitrate dehydrogenase 1 wild-type, high tumor grade and 1p19q non-codeleted, while immune checkpoint expression was generally higher in the high-score subgroup. The constructed scoring model was validated using an external dataset, and the tissue inhibitor of metalloproteinase 1 gene was identified through protein interaction analysis, suggesting its potential involvement in glioma malignancy and promotion of glioblastoma proliferation. In conclusion, FAO-related genes may contribute to tumor development through immune mechanisms and the present study may provide novel insights for potential therapeutic strategies in glioma treatment.</description><subject>Brain cancer</subject><subject>Cancer</subject><subject>Cancer therapies</subject><subject>Cluster analysis</subject><subject>Datasets</subject><subject>DNA methylation</subject><subject>Fatty acids</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Glioma</subject><subject>Gliomas</subject><subject>Immunotherapy</subject><subject>Kinases</subject><subject>Medical prognosis</subject><subject>Metabolism</subject><subject>Oxidation</subject><subject>Oxidation-reduction reaction</subject><subject>Proteins</subject><subject>Risk factors</subject><subject>Survival analysis</subject><subject>Tumors</subject><issn>1792-1074</issn><issn>1792-1082</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><recordid>eNptks9vFSEQxzdG0za1x14NiYm3fS4_dmGPTaO1SRMveiY8GLZUFp7AGnvzX-ilf2D_Enl9z2oT4cAMfGYmM3yb5hR3KypG8j76FekIW2FGCHnRHGE-khZ3grx8sjk7bE5yvunq6gcsxHDQHFJB2Cg6cdTcXxoIxVmnVXExIBUM-qG8Mzs3WrRJcQoxF6fRBAHyI-LmeQmAfLWzVhtA2U1BlSXV97XKYNA2F7KqlFuktKv-z33Oh193CbwqlUkuf0NZxwRojgY8cgFN3sVZvW5eWeUznOzP4-brxw9fzj-1V58vLs_PrlrNMCvtqHhnu5FxCwxwb8hAOR6ZAG1BaYUHzkhvmKJMUM5YT4hZWz1waqGzazLS4-btLm_t8vsCucibuKRQS0oyYoFZzwfxl5qUB-mCjSUpPbus5RkXhNbhU1yp1X-oug3MTscA1tX7ZwHv_gm4BuXLdY5-2U4pPwfbHahTzDmBlZvkZpVuJe7kVggyerkVgnwUQuXf7Lta1jOYJ_rPt9PfHluu0Q</recordid><startdate>20240201</startdate><enddate>20240201</enddate><creator>Guo, Fangzhou</creator><creator>Ling, Guoyuan</creator><creator>Zhai, Zhenzhu</creator><creator>Lei, Yi</creator><creator>Mo, Ligen</creator><creator>Piao, Haozhe</creator><general>Spandidos Publications</general><general>Spandidos Publications UK Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AN0</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20240201</creationdate><title>Identification and validation of prognostic genes and immune landscape signatures based on a fatty acid oxidation‑related risk score model in glioma</title><author>Guo, Fangzhou ; 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The aim of the present study was to investigate the relationship between FAO-related genes and glioma by constructing gene clusters using a glioma cohort. A total of 287 differentially expressed genes related to FAO were identified and the top 50 genes were selected based on their P-values. Subsequently, patients were classified into two distinct gene subtypes (A and B) based on these genes. Scores for each patient were calculated using the 50 genes and the patients were divided into the high and low-score groups accordingly. Patients in subtype B exhibited higher tumor grades and poor prognostic factors such as older age and worse survival rates. The high-score subgroup had unfavorable indicators, including isocitrate dehydrogenase 1 wild-type, high tumor grade and 1p19q non-codeleted, while immune checkpoint expression was generally higher in the high-score subgroup. The constructed scoring model was validated using an external dataset, and the tissue inhibitor of metalloproteinase 1 gene was identified through protein interaction analysis, suggesting its potential involvement in glioma malignancy and promotion of glioblastoma proliferation. In conclusion, FAO-related genes may contribute to tumor development through immune mechanisms and the present study may provide novel insights for potential therapeutic strategies in glioma treatment.</abstract><cop>Greece</cop><pub>Spandidos Publications</pub><pmid>38249808</pmid><doi>10.3892/ol.2024.14222</doi><oa>free_for_read</oa></addata></record> |
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subjects | Brain cancer Cancer Cancer therapies Cluster analysis Datasets DNA methylation Fatty acids Gene expression Genes Genetic aspects Genomes Genomics Glioma Gliomas Immunotherapy Kinases Medical prognosis Metabolism Oxidation Oxidation-reduction reaction Proteins Risk factors Survival analysis Tumors |
title | Identification and validation of prognostic genes and immune landscape signatures based on a fatty acid oxidation‑related risk score model in glioma |
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