Non-coding RNAs and functional RNA elements in Thermus thermophilus
To complete the ThermusQ database, small non-coding RNAs (ncRNAs) and functional RNA elements found in Thermus thermophilus were summarized with annotations. The well-known three ncRNAs, M1 RNA, tmRNA and SRP RNA, were annotated as ttj8_nc001 to ttj8_nc003, and 10 novel RNAs were annotated as ttj8_n...
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| Veröffentlicht in: | Journal of general and applied microbiology 2023, Vol.69(2), pp.131-134 |
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| container_title | Journal of general and applied microbiology |
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| creator | Kawai, Gota Sampei, Gen-ichi Nishiyama, Makoto Bessho, Yoshitaka |
| description | To complete the ThermusQ database, small non-coding RNAs (ncRNAs) and functional RNA elements found in Thermus thermophilus were summarized with annotations. The well-known three ncRNAs, M1 RNA, tmRNA and SRP RNA, were annotated as ttj8_nc001 to ttj8_nc003, and 10 novel RNAs were annotated as ttj8_nc004 to ttj8_nc013. Antisense RNAs for some ORFs were annotated as ttj8_EST00001 to ttj8_EST00006. In addition, a set of conserved sequences found in T. thermophilus HB27 were also described. |
| doi_str_mv | 10.2323/jgam.2023.05.001 |
| format | Article |
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The well-known three ncRNAs, M1 RNA, tmRNA and SRP RNA, were annotated as ttj8_nc001 to ttj8_nc003, and 10 novel RNAs were annotated as ttj8_nc004 to ttj8_nc013. Antisense RNAs for some ORFs were annotated as ttj8_EST00001 to ttj8_EST00006. 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Gen. Appl. Microbiol.</addtitle><description>To complete the ThermusQ database, small non-coding RNAs (ncRNAs) and functional RNA elements found in Thermus thermophilus were summarized with annotations. The well-known three ncRNAs, M1 RNA, tmRNA and SRP RNA, were annotated as ttj8_nc001 to ttj8_nc003, and 10 novel RNAs were annotated as ttj8_nc004 to ttj8_nc013. Antisense RNAs for some ORFs were annotated as ttj8_EST00001 to ttj8_EST00006. In addition, a set of conserved sequences found in T. thermophilus HB27 were also described.</description><subject>Annotations</subject><subject>Antisense RNA</subject><subject>functional RNA</subject><subject>Non-coding RNA</subject><subject>RNA, Untranslated - genetics</subject><subject>Thermus thermophilus</subject><subject>Thermus thermophilus - genetics</subject><subject>ThermusQ annotation</subject><subject>TmRNA</subject><issn>0022-1260</issn><issn>1349-8037</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkE1Lw0AQhhdRbK3ePUnAc-rsbnaTHEuxKpQKUs_LZnfSpuSj7iYH_72JqfUyA8PzvgwPIfcU5owz_nTY6WrOgPE5iDkAvSBTyqM0TIDHl2QKwFhImYQJufH-AMAlS6JrMuExi6lgMCXLTVOHprFFvQs-Ngsf6NoGeVebtmhqXQ63AEussG59UNTBdo-u6nzQDrs57ouy87fkKtelx7vTnpHP1fN2-Rqu31_elot1aIQQbWglNWCtyGkS0djShCEzmcikjDXNpWWxQUlzrS1qKwFtmrA81mLISMSMz8jj2Ht0zVeHvlWHpnP9l16xFGga04jKnoKRMq7x3mGujq6otPtWFNRgTQ3W1GBNgVC9tT7ycCrusgrtOfCnqQdWI3Dwrd7hGdCuLUyJY6NMFfsd_81nwOy1U1jzH-qzgU4</recordid><startdate>20230101</startdate><enddate>20230101</enddate><creator>Kawai, Gota</creator><creator>Sampei, Gen-ichi</creator><creator>Nishiyama, Makoto</creator><creator>Bessho, Yoshitaka</creator><general>Applied Microbiology, Molecular and Cellular Biosciences Research Foundation</general><general>Japan Science and Technology Agency</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20230101</creationdate><title>Non-coding RNAs and functional RNA elements in Thermus thermophilus</title><author>Kawai, Gota ; Sampei, Gen-ichi ; Nishiyama, Makoto ; Bessho, Yoshitaka</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c555t-d61c0dd5f18417d182e2cb5b667a1f6d27ce61faadead60ed982f7a50dd56eeb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Annotations</topic><topic>Antisense RNA</topic><topic>functional RNA</topic><topic>Non-coding RNA</topic><topic>RNA, Untranslated - genetics</topic><topic>Thermus thermophilus</topic><topic>Thermus thermophilus - genetics</topic><topic>ThermusQ annotation</topic><topic>TmRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kawai, Gota</creatorcontrib><creatorcontrib>Sampei, Gen-ichi</creatorcontrib><creatorcontrib>Nishiyama, Makoto</creatorcontrib><creatorcontrib>Bessho, Yoshitaka</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of general and applied microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kawai, Gota</au><au>Sampei, Gen-ichi</au><au>Nishiyama, Makoto</au><au>Bessho, Yoshitaka</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Non-coding RNAs and functional RNA elements in Thermus thermophilus</atitle><jtitle>Journal of general and applied microbiology</jtitle><addtitle>J. Gen. Appl. Microbiol.</addtitle><date>2023-01-01</date><risdate>2023</risdate><volume>69</volume><issue>2</issue><spage>131</spage><epage>134</epage><pages>131-134</pages><artnum>2023.05.001</artnum><issn>0022-1260</issn><eissn>1349-8037</eissn><abstract>To complete the ThermusQ database, small non-coding RNAs (ncRNAs) and functional RNA elements found in Thermus thermophilus were summarized with annotations. The well-known three ncRNAs, M1 RNA, tmRNA and SRP RNA, were annotated as ttj8_nc001 to ttj8_nc003, and 10 novel RNAs were annotated as ttj8_nc004 to ttj8_nc013. Antisense RNAs for some ORFs were annotated as ttj8_EST00001 to ttj8_EST00006. In addition, a set of conserved sequences found in T. thermophilus HB27 were also described.</abstract><cop>Japan</cop><pub>Applied Microbiology, Molecular and Cellular Biosciences Research Foundation</pub><pmid>37271520</pmid><doi>10.2323/jgam.2023.05.001</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Annotations Antisense RNA functional RNA Non-coding RNA RNA, Untranslated - genetics Thermus thermophilus Thermus thermophilus - genetics ThermusQ annotation TmRNA |
| title | Non-coding RNAs and functional RNA elements in Thermus thermophilus |
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