Application of computational approaches in biomembranes: From structure to function
Biological membranes (biomembranes) are one of the most complicated structures that allow life to exist. Investigating their structure, dynamics, and function is crucial for advancing our knowledge of cellular mechanisms and developing novel therapeutic strategies. However, experimental investigatio...
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Veröffentlicht in: | Wiley interdisciplinary reviews. Computational molecular science 2023-11, Vol.13 (6), p.e1679 |
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description | Biological membranes (biomembranes) are one of the most complicated structures that allow life to exist. Investigating their structure, dynamics, and function is crucial for advancing our knowledge of cellular mechanisms and developing novel therapeutic strategies. However, experimental investigation of many biomembrane phenomena is challenging due to their compositional and structural complexity, as well as the inherently multi‐scalar features. Computational approaches, particularly molecular dynamics (MD) simulations, have emerged as powerful tools for addressing the atomic details of biomembrane systems, driving breakthroughs in our understanding of biomembranes and their roles in cellular function. This review presents an overview of the latest advancements in related computational approaches, from force fields and model construction to MD simulations and trajectory analysis. We also discussed current hot research topics and challenges. Finally, we outline future directions, emphasizing the integration of force field development, enhanced sampling techniques, and data‐driven approaches to accelerate the growth of this field in the years to come. We aim to equip readers with an understanding of the promise and limitations of emerging computational technologies in biomembrane systems and offer valuable recommendations for future research endeavors.
This article is categorized under:
Structure and Mechanism > Computational Biochemistry and Biophysics
Molecular and Statistical Mechanics > Molecular Dynamics and Monte‐Carlo Methods |
doi_str_mv | 10.1002/wcms.1679 |
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This article is categorized under:
Structure and Mechanism > Computational Biochemistry and Biophysics
Molecular and Statistical Mechanics > Molecular Dynamics and Monte‐Carlo Methods</description><identifier>ISSN: 1759-0876</identifier><identifier>EISSN: 1759-0884</identifier><identifier>DOI: 10.1002/wcms.1679</identifier><language>eng</language><publisher>Hoboken: Wiley Subscription Services, Inc</publisher><subject>Biological membranes ; Computer applications ; Dynamic structural analysis ; Mechanics ; Membranes ; Molecular dynamics ; Statistical mechanics ; Structure-function relationships ; Trajectory analysis</subject><ispartof>Wiley interdisciplinary reviews. Computational molecular science, 2023-11, Vol.13 (6), p.e1679</ispartof><rights>2023 Wiley Periodicals, LLC.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c257t-a1991d08e24f4af30ed4224dd2980478121aabffe5423d2290c1020ec648ea3c3</citedby><cites>FETCH-LOGICAL-c257t-a1991d08e24f4af30ed4224dd2980478121aabffe5423d2290c1020ec648ea3c3</cites><orcidid>0000-0002-9284-3667 ; 0000-0002-8835-0587 ; 0000-0001-7793-5486 ; 0000-0002-2499-026X ; 0000-0003-4947-7953 ; 0000-0001-5664-5850 ; 0000-0002-4632-4364 ; 0000-0003-0014-5683</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Guo, Jingjing</creatorcontrib><creatorcontrib>Bao, Yiqiong</creatorcontrib><creatorcontrib>Li, Mengrong</creatorcontrib><creatorcontrib>Li, Shu</creatorcontrib><creatorcontrib>Xi, Lili</creatorcontrib><creatorcontrib>Xin, Pengyang</creatorcontrib><creatorcontrib>Wu, Lei</creatorcontrib><creatorcontrib>Liu, Huanxiang</creatorcontrib><creatorcontrib>Mu, Yuguang</creatorcontrib><title>Application of computational approaches in biomembranes: From structure to function</title><title>Wiley interdisciplinary reviews. Computational molecular science</title><description>Biological membranes (biomembranes) are one of the most complicated structures that allow life to exist. Investigating their structure, dynamics, and function is crucial for advancing our knowledge of cellular mechanisms and developing novel therapeutic strategies. However, experimental investigation of many biomembrane phenomena is challenging due to their compositional and structural complexity, as well as the inherently multi‐scalar features. Computational approaches, particularly molecular dynamics (MD) simulations, have emerged as powerful tools for addressing the atomic details of biomembrane systems, driving breakthroughs in our understanding of biomembranes and their roles in cellular function. This review presents an overview of the latest advancements in related computational approaches, from force fields and model construction to MD simulations and trajectory analysis. We also discussed current hot research topics and challenges. Finally, we outline future directions, emphasizing the integration of force field development, enhanced sampling techniques, and data‐driven approaches to accelerate the growth of this field in the years to come. We aim to equip readers with an understanding of the promise and limitations of emerging computational technologies in biomembrane systems and offer valuable recommendations for future research endeavors.
This article is categorized under:
Structure and Mechanism > Computational Biochemistry and Biophysics
Molecular and Statistical Mechanics > Molecular Dynamics and Monte‐Carlo Methods</description><subject>Biological membranes</subject><subject>Computer applications</subject><subject>Dynamic structural analysis</subject><subject>Mechanics</subject><subject>Membranes</subject><subject>Molecular dynamics</subject><subject>Statistical mechanics</subject><subject>Structure-function relationships</subject><subject>Trajectory analysis</subject><issn>1759-0876</issn><issn>1759-0884</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNo9kEFLxDAQhYMouKx78B8EPHnompmmbeJtWVwVFjyo55CmCXbZNjVJEf-9rSvOZWbgvcfjI-Qa2BoYw7sv08U1lJU8IwuoCpkxIfj5_12Vl2QV44FNwyVgDgvyuhmGY2t0an1PvaPGd8OYfl99pHoYgtfmw0ba9rRufWe7Oujexnu6C76jMYXRpDFYmjx1Y29m4xW5cPoY7epvL8n77uFt-5TtXx6ft5t9ZrCoUqZBSmiYsMgd1y5ntuGIvGlQCsYrAQha187ZgmPeIEpmgCGzpuTC6tzkS3Jzyp1Kfo42JnXwY5h6R4VCFLzgFYhJdXtSmeBjDNapIbSdDt8KmJqxqRmbmrHlP7RQYMg</recordid><startdate>202311</startdate><enddate>202311</enddate><creator>Guo, Jingjing</creator><creator>Bao, Yiqiong</creator><creator>Li, Mengrong</creator><creator>Li, Shu</creator><creator>Xi, Lili</creator><creator>Xin, Pengyang</creator><creator>Wu, Lei</creator><creator>Liu, Huanxiang</creator><creator>Mu, Yuguang</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7TN</scope><scope>7UA</scope><scope>C1K</scope><scope>F1W</scope><scope>H96</scope><scope>JQ2</scope><scope>L.G</scope><orcidid>https://orcid.org/0000-0002-9284-3667</orcidid><orcidid>https://orcid.org/0000-0002-8835-0587</orcidid><orcidid>https://orcid.org/0000-0001-7793-5486</orcidid><orcidid>https://orcid.org/0000-0002-2499-026X</orcidid><orcidid>https://orcid.org/0000-0003-4947-7953</orcidid><orcidid>https://orcid.org/0000-0001-5664-5850</orcidid><orcidid>https://orcid.org/0000-0002-4632-4364</orcidid><orcidid>https://orcid.org/0000-0003-0014-5683</orcidid></search><sort><creationdate>202311</creationdate><title>Application of computational approaches in biomembranes: From structure to function</title><author>Guo, Jingjing ; Bao, Yiqiong ; Li, Mengrong ; Li, Shu ; Xi, Lili ; Xin, Pengyang ; Wu, Lei ; Liu, Huanxiang ; Mu, Yuguang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c257t-a1991d08e24f4af30ed4224dd2980478121aabffe5423d2290c1020ec648ea3c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Biological membranes</topic><topic>Computer applications</topic><topic>Dynamic structural analysis</topic><topic>Mechanics</topic><topic>Membranes</topic><topic>Molecular dynamics</topic><topic>Statistical mechanics</topic><topic>Structure-function relationships</topic><topic>Trajectory analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Guo, Jingjing</creatorcontrib><creatorcontrib>Bao, Yiqiong</creatorcontrib><creatorcontrib>Li, Mengrong</creatorcontrib><creatorcontrib>Li, Shu</creatorcontrib><creatorcontrib>Xi, Lili</creatorcontrib><creatorcontrib>Xin, Pengyang</creatorcontrib><creatorcontrib>Wu, Lei</creatorcontrib><creatorcontrib>Liu, Huanxiang</creatorcontrib><creatorcontrib>Mu, Yuguang</creatorcontrib><collection>CrossRef</collection><collection>Aqualine</collection><collection>Oceanic Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 2: Ocean Technology, Policy & Non-Living Resources</collection><collection>ProQuest Computer Science Collection</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Wiley interdisciplinary reviews. Computational molecular science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Guo, Jingjing</au><au>Bao, Yiqiong</au><au>Li, Mengrong</au><au>Li, Shu</au><au>Xi, Lili</au><au>Xin, Pengyang</au><au>Wu, Lei</au><au>Liu, Huanxiang</au><au>Mu, Yuguang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Application of computational approaches in biomembranes: From structure to function</atitle><jtitle>Wiley interdisciplinary reviews. Computational molecular science</jtitle><date>2023-11</date><risdate>2023</risdate><volume>13</volume><issue>6</issue><spage>e1679</spage><pages>e1679-</pages><issn>1759-0876</issn><eissn>1759-0884</eissn><abstract>Biological membranes (biomembranes) are one of the most complicated structures that allow life to exist. 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Finally, we outline future directions, emphasizing the integration of force field development, enhanced sampling techniques, and data‐driven approaches to accelerate the growth of this field in the years to come. We aim to equip readers with an understanding of the promise and limitations of emerging computational technologies in biomembrane systems and offer valuable recommendations for future research endeavors.
This article is categorized under:
Structure and Mechanism > Computational Biochemistry and Biophysics
Molecular and Statistical Mechanics > Molecular Dynamics and Monte‐Carlo Methods</abstract><cop>Hoboken</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1002/wcms.1679</doi><orcidid>https://orcid.org/0000-0002-9284-3667</orcidid><orcidid>https://orcid.org/0000-0002-8835-0587</orcidid><orcidid>https://orcid.org/0000-0001-7793-5486</orcidid><orcidid>https://orcid.org/0000-0002-2499-026X</orcidid><orcidid>https://orcid.org/0000-0003-4947-7953</orcidid><orcidid>https://orcid.org/0000-0001-5664-5850</orcidid><orcidid>https://orcid.org/0000-0002-4632-4364</orcidid><orcidid>https://orcid.org/0000-0003-0014-5683</orcidid></addata></record> |
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subjects | Biological membranes Computer applications Dynamic structural analysis Mechanics Membranes Molecular dynamics Statistical mechanics Structure-function relationships Trajectory analysis |
title | Application of computational approaches in biomembranes: From structure to function |
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