Transcriptome Analysis Revealed the Differential Molecular Response Mechanisms of Roots, Stems, and Leaves in Mung Bean to Cadmium Stress
To acquire a comprehensive understanding of the different plant organ molecular mechanisms in response to cadmium (Cd), transcriptome analyses of mung bean roots, stems, and leaves exposed to 100-μM Cd for 1, 5, and 9 days were performed. A total of 13,055, 8189, and 6705 differentially expressed ge...
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| Veröffentlicht in: | Journal of plant growth regulation 2023-11, Vol.42 (11), p.7054-7069 |
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| description | To acquire a comprehensive understanding of the different plant organ molecular mechanisms in response to cadmium (Cd), transcriptome analyses of mung bean roots, stems, and leaves exposed to 100-μM Cd for 1, 5, and 9 days were performed. A total of 13,055, 8189, and 6705 differentially expressed genes (DEGs) were obtained in roots, stems, and leaves, respectively. The analysis of DEG enrichment and functional profiling showed that the upregulated DEGs in roots were significantly (
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| doi_str_mv | 10.1007/s00344-023-10997-y |
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p
< 0.05) enriched in signaling-, oxidation‒reduction-, and detoxification process-related GO terms, and the downregulated DEGs in roots were significantly (
p
< 0.05) enriched in cell wall-, membrane-, and cell cytoskeleton-related GO terms. The upregulated DEGs in stems were significantly (
p
< 0.05) enriched in signaling-, detoxification process-, and secondary metabolic process-related GO terms, and the downregulated DEGs in stems were significantly (
p
< 0.05) enriched in cell wall- and membrane-related GO terms. The upregulated DEGs in leaves were significantly (
p
< 0.05) enriched in regulation of transcription- and oxidation‒reduction process-related GO terms, and the downregulated DEGs in leaves were significantly (
p
< 0.05) enriched in cell cytoskeleton- and photosynthesis-related GO terms. Key DEGs involved in the Cd response were obtained, including glutathione S-transferase-coding DEGs, pathogenesis-related protein-coding DEGs, isocitrate lyase-coding DEGs, malate synthase-coding DEGs, peroxidase-coding DEGs, photosynthesis-related DEGs, transporter-related DEGs, and secondary metabolism-related DEGs. Based on the results, it was proposed that the root was the principal organ involved in the response to Cd stress, the antioxidant system and secondary metabolic process were the main response pathways of the stem in response to Cd, and photosynthesis and the glyoxylate pathway were important biological processes in the leaf response to Cd.]]></description><identifier>ISSN: 0721-7595</identifier><identifier>EISSN: 1435-8107</identifier><identifier>DOI: 10.1007/s00344-023-10997-y</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Agriculture ; Beans ; Biological activity ; Biomedical and Life Sciences ; Cadmium ; Cell walls ; Coding ; Cytoskeleton ; Detoxification ; Down-regulation ; Enrichment ; Gene regulation ; Glutathione ; Glutathione transferase ; Isocitrate lyase ; Leaves ; Life Sciences ; Malate synthase ; Membranes ; Metabolism ; Molecular modelling ; Oxidation ; Pathogenesis ; Peroxidase ; Photosynthesis ; Plant Anatomy/Development ; Plant Physiology ; Plant Sciences ; Reduction ; Roots ; Signal transduction ; Stems ; Transcriptomes</subject><ispartof>Journal of plant growth regulation, 2023-11, Vol.42 (11), p.7054-7069</ispartof><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c270t-a8677351ecac50089d4a62f84c36871c192da60db02d38e0badc2dd0b359d89d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00344-023-10997-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00344-023-10997-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,782,786,27933,27934,41497,42566,51328</link.rule.ids></links><search><creatorcontrib>Wu, Ping-min</creatorcontrib><creatorcontrib>Leng, Yan</creatorcontrib><creatorcontrib>Li, Shi-Weng</creatorcontrib><creatorcontrib>Wang, Yu-Lin</creatorcontrib><creatorcontrib>Qiao, Fu-Jun</creatorcontrib><title>Transcriptome Analysis Revealed the Differential Molecular Response Mechanisms of Roots, Stems, and Leaves in Mung Bean to Cadmium Stress</title><title>Journal of plant growth regulation</title><addtitle>J Plant Growth Regul</addtitle><description><![CDATA[To acquire a comprehensive understanding of the different plant organ molecular mechanisms in response to cadmium (Cd), transcriptome analyses of mung bean roots, stems, and leaves exposed to 100-μM Cd for 1, 5, and 9 days were performed. A total of 13,055, 8189, and 6705 differentially expressed genes (DEGs) were obtained in roots, stems, and leaves, respectively. The analysis of DEG enrichment and functional profiling showed that the upregulated DEGs in roots were significantly (
p
< 0.05) enriched in signaling-, oxidation‒reduction-, and detoxification process-related GO terms, and the downregulated DEGs in roots were significantly (
p
< 0.05) enriched in cell wall-, membrane-, and cell cytoskeleton-related GO terms. The upregulated DEGs in stems were significantly (
p
< 0.05) enriched in signaling-, detoxification process-, and secondary metabolic process-related GO terms, and the downregulated DEGs in stems were significantly (
p
< 0.05) enriched in cell wall- and membrane-related GO terms. The upregulated DEGs in leaves were significantly (
p
< 0.05) enriched in regulation of transcription- and oxidation‒reduction process-related GO terms, and the downregulated DEGs in leaves were significantly (
p
< 0.05) enriched in cell cytoskeleton- and photosynthesis-related GO terms. Key DEGs involved in the Cd response were obtained, including glutathione S-transferase-coding DEGs, pathogenesis-related protein-coding DEGs, isocitrate lyase-coding DEGs, malate synthase-coding DEGs, peroxidase-coding DEGs, photosynthesis-related DEGs, transporter-related DEGs, and secondary metabolism-related DEGs. Based on the results, it was proposed that the root was the principal organ involved in the response to Cd stress, the antioxidant system and secondary metabolic process were the main response pathways of the stem in response to Cd, and photosynthesis and the glyoxylate pathway were important biological processes in the leaf response to Cd.]]></description><subject>Agriculture</subject><subject>Beans</subject><subject>Biological activity</subject><subject>Biomedical and Life Sciences</subject><subject>Cadmium</subject><subject>Cell walls</subject><subject>Coding</subject><subject>Cytoskeleton</subject><subject>Detoxification</subject><subject>Down-regulation</subject><subject>Enrichment</subject><subject>Gene regulation</subject><subject>Glutathione</subject><subject>Glutathione transferase</subject><subject>Isocitrate lyase</subject><subject>Leaves</subject><subject>Life Sciences</subject><subject>Malate synthase</subject><subject>Membranes</subject><subject>Metabolism</subject><subject>Molecular modelling</subject><subject>Oxidation</subject><subject>Pathogenesis</subject><subject>Peroxidase</subject><subject>Photosynthesis</subject><subject>Plant Anatomy/Development</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Reduction</subject><subject>Roots</subject><subject>Signal transduction</subject><subject>Stems</subject><subject>Transcriptomes</subject><issn>0721-7595</issn><issn>1435-8107</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kN1u1DAQhS0EEkvhBbiyxC2hYzuJk8uy_FXaFVIp19asPWlTJfbiSSrtI_DWGBaJO66ORvrOkeYT4rWCdwrAXjKAqesKtKkU9L2tTk_ERtWmqToF9qnYgNWqsk3fPBcvmB8AVDnsRvy8zRjZ5_G4pJnkVcTpxCPLG3oknCjI5Z7kh3EYKFNcRpzkPk3k1wlzYfiYIpPck7_HOPLMMg3yJqWF38pvC80lMAa5I3wklmOU-zXeyfeEUS5JbjHM4zoXMhPzS_FswInp1d-8EN8_fbzdfql2Xz9fb692ldcWlgq71lrTKPLoG4CuDzW2euhqb9rOKq96HbCFcAAdTEdwwOB1CHAwTR8KbS7Em_PuMacfK_HiHtKay9_sdGf7uukaaAulz5TPiTnT4I55nDGfnAL3W7k7K3dFufuj3J1KyZxLXOB4R_nf9H9avwBO1IZE</recordid><startdate>20231101</startdate><enddate>20231101</enddate><creator>Wu, Ping-min</creator><creator>Leng, Yan</creator><creator>Li, Shi-Weng</creator><creator>Wang, Yu-Lin</creator><creator>Qiao, Fu-Jun</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20231101</creationdate><title>Transcriptome Analysis Revealed the Differential Molecular Response Mechanisms of Roots, Stems, and Leaves in Mung Bean to Cadmium Stress</title><author>Wu, Ping-min ; Leng, Yan ; Li, Shi-Weng ; Wang, Yu-Lin ; Qiao, Fu-Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c270t-a8677351ecac50089d4a62f84c36871c192da60db02d38e0badc2dd0b359d89d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Agriculture</topic><topic>Beans</topic><topic>Biological activity</topic><topic>Biomedical and Life Sciences</topic><topic>Cadmium</topic><topic>Cell walls</topic><topic>Coding</topic><topic>Cytoskeleton</topic><topic>Detoxification</topic><topic>Down-regulation</topic><topic>Enrichment</topic><topic>Gene regulation</topic><topic>Glutathione</topic><topic>Glutathione transferase</topic><topic>Isocitrate lyase</topic><topic>Leaves</topic><topic>Life Sciences</topic><topic>Malate synthase</topic><topic>Membranes</topic><topic>Metabolism</topic><topic>Molecular modelling</topic><topic>Oxidation</topic><topic>Pathogenesis</topic><topic>Peroxidase</topic><topic>Photosynthesis</topic><topic>Plant Anatomy/Development</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Reduction</topic><topic>Roots</topic><topic>Signal transduction</topic><topic>Stems</topic><topic>Transcriptomes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Ping-min</creatorcontrib><creatorcontrib>Leng, Yan</creatorcontrib><creatorcontrib>Li, Shi-Weng</creatorcontrib><creatorcontrib>Wang, Yu-Lin</creatorcontrib><creatorcontrib>Qiao, Fu-Jun</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Journal of plant growth regulation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Ping-min</au><au>Leng, Yan</au><au>Li, Shi-Weng</au><au>Wang, Yu-Lin</au><au>Qiao, Fu-Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptome Analysis Revealed the Differential Molecular Response Mechanisms of Roots, Stems, and Leaves in Mung Bean to Cadmium Stress</atitle><jtitle>Journal of plant growth regulation</jtitle><stitle>J Plant Growth Regul</stitle><date>2023-11-01</date><risdate>2023</risdate><volume>42</volume><issue>11</issue><spage>7054</spage><epage>7069</epage><pages>7054-7069</pages><issn>0721-7595</issn><eissn>1435-8107</eissn><abstract><![CDATA[To acquire a comprehensive understanding of the different plant organ molecular mechanisms in response to cadmium (Cd), transcriptome analyses of mung bean roots, stems, and leaves exposed to 100-μM Cd for 1, 5, and 9 days were performed. A total of 13,055, 8189, and 6705 differentially expressed genes (DEGs) were obtained in roots, stems, and leaves, respectively. The analysis of DEG enrichment and functional profiling showed that the upregulated DEGs in roots were significantly (
p
< 0.05) enriched in signaling-, oxidation‒reduction-, and detoxification process-related GO terms, and the downregulated DEGs in roots were significantly (
p
< 0.05) enriched in cell wall-, membrane-, and cell cytoskeleton-related GO terms. The upregulated DEGs in stems were significantly (
p
< 0.05) enriched in signaling-, detoxification process-, and secondary metabolic process-related GO terms, and the downregulated DEGs in stems were significantly (
p
< 0.05) enriched in cell wall- and membrane-related GO terms. The upregulated DEGs in leaves were significantly (
p
< 0.05) enriched in regulation of transcription- and oxidation‒reduction process-related GO terms, and the downregulated DEGs in leaves were significantly (
p
< 0.05) enriched in cell cytoskeleton- and photosynthesis-related GO terms. Key DEGs involved in the Cd response were obtained, including glutathione S-transferase-coding DEGs, pathogenesis-related protein-coding DEGs, isocitrate lyase-coding DEGs, malate synthase-coding DEGs, peroxidase-coding DEGs, photosynthesis-related DEGs, transporter-related DEGs, and secondary metabolism-related DEGs. Based on the results, it was proposed that the root was the principal organ involved in the response to Cd stress, the antioxidant system and secondary metabolic process were the main response pathways of the stem in response to Cd, and photosynthesis and the glyoxylate pathway were important biological processes in the leaf response to Cd.]]></abstract><cop>New York</cop><pub>Springer US</pub><doi>10.1007/s00344-023-10997-y</doi><tpages>16</tpages></addata></record> |
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| subjects | Agriculture Beans Biological activity Biomedical and Life Sciences Cadmium Cell walls Coding Cytoskeleton Detoxification Down-regulation Enrichment Gene regulation Glutathione Glutathione transferase Isocitrate lyase Leaves Life Sciences Malate synthase Membranes Metabolism Molecular modelling Oxidation Pathogenesis Peroxidase Photosynthesis Plant Anatomy/Development Plant Physiology Plant Sciences Reduction Roots Signal transduction Stems Transcriptomes |
| title | Transcriptome Analysis Revealed the Differential Molecular Response Mechanisms of Roots, Stems, and Leaves in Mung Bean to Cadmium Stress |
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