Neural network predicts ion concentration profiles under nanoconfinement
Modeling the ion concentration profile in nanochannel plays an important role in understanding the electrical double layer and electro-osmotic flow. Due to the non-negligible surface interaction and the effect of discrete solvent molecules, molecular dynamics (MD) simulation is often used as an esse...
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Veröffentlicht in: | The Journal of chemical physics 2023-09, Vol.159 (9) |
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creator | Cao, Zhonglin Wang, Yuyang Lorsung, Cooper Barati Farimani, Amir |
description | Modeling the ion concentration profile in nanochannel plays an important role in understanding the electrical double layer and electro-osmotic flow. Due to the non-negligible surface interaction and the effect of discrete solvent molecules, molecular dynamics (MD) simulation is often used as an essential tool to study the behavior of ions under nanoconfinement. Despite the accuracy of MD simulation in modeling nanoconfinement systems, it is computationally expensive. In this work, we propose neural network to predict ion concentration profiles in nanochannels with different configurations, including channel widths, ion molarity, and ion types. By modeling the ion concentration profile as a probability distribution, our neural network can serve as a much faster surrogate model for MD simulation with high accuracy. We further demonstrate the superior prediction accuracy of neural network over XGBoost. Finally, we demonstrated that neural network is flexible in predicting ion concentration profiles with different bin sizes. Overall, our deep learning model is a fast, flexible, and accurate surrogate model to predict ion concentration profiles in nanoconfinement. |
doi_str_mv | 10.1063/5.0147119 |
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Due to the non-negligible surface interaction and the effect of discrete solvent molecules, molecular dynamics (MD) simulation is often used as an essential tool to study the behavior of ions under nanoconfinement. Despite the accuracy of MD simulation in modeling nanoconfinement systems, it is computationally expensive. In this work, we propose neural network to predict ion concentration profiles in nanochannels with different configurations, including channel widths, ion molarity, and ion types. By modeling the ion concentration profile as a probability distribution, our neural network can serve as a much faster surrogate model for MD simulation with high accuracy. We further demonstrate the superior prediction accuracy of neural network over XGBoost. Finally, we demonstrated that neural network is flexible in predicting ion concentration profiles with different bin sizes. 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Due to the non-negligible surface interaction and the effect of discrete solvent molecules, molecular dynamics (MD) simulation is often used as an essential tool to study the behavior of ions under nanoconfinement. Despite the accuracy of MD simulation in modeling nanoconfinement systems, it is computationally expensive. In this work, we propose neural network to predict ion concentration profiles in nanochannels with different configurations, including channel widths, ion molarity, and ion types. By modeling the ion concentration profile as a probability distribution, our neural network can serve as a much faster surrogate model for MD simulation with high accuracy. We further demonstrate the superior prediction accuracy of neural network over XGBoost. Finally, we demonstrated that neural network is flexible in predicting ion concentration profiles with different bin sizes. Overall, our deep learning model is a fast, flexible, and accurate surrogate model to predict ion concentration profiles in nanoconfinement.</description><subject>Accuracy</subject><subject>Electroosmosis</subject><subject>Ion concentration</subject><subject>Ions</subject><subject>Modelling</subject><subject>Molecular dynamics</subject><subject>Nanochannels</subject><subject>Neural networks</subject><subject>Simulation</subject><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNp90E1LAzEQBuAgCtbqwX-w4EWFrTP52s1Rilqh6EXPSzZNYOs2qcku4r83tT158DQz8DC8vIRcIswQJLsTM0BeIaojMkGoVVlJBcdkAkCxVBLkKTlLaQ0AWFE-IYsXO0bdF94OXyF-FNtoV50ZUtEFX5jgjfVD1MPu2sbgut6mYvQrGwuvfcjAdd5uMjonJ073yV4c5pS8Pz68zRfl8vXpeX6_LA2jYiipE7xFqKAFqpjg1FRK1C2rULcSHRoEzvKmBKOSM0lrp2ukxhgLIKVjU3K9_5vjfI42Dc2mS8b2vfY2jKmhtQQOgkqR6dUfug5j9DldVkJVlDLFs7rZKxNDStG6Zhu7jY7fDUKz67QRzaHTbG_3Nplu-G3lH_wDhZx0ig</recordid><startdate>20230907</startdate><enddate>20230907</enddate><creator>Cao, Zhonglin</creator><creator>Wang, Yuyang</creator><creator>Lorsung, Cooper</creator><creator>Barati Farimani, Amir</creator><general>American Institute of Physics</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-1410-9077</orcidid><orcidid>https://orcid.org/0000-0003-0723-6246</orcidid><orcidid>https://orcid.org/0000-0002-2952-8576</orcidid><orcidid>https://orcid.org/0000-0003-2096-1178</orcidid></search><sort><creationdate>20230907</creationdate><title>Neural network predicts ion concentration profiles under nanoconfinement</title><author>Cao, Zhonglin ; Wang, Yuyang ; Lorsung, Cooper ; Barati Farimani, Amir</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c325t-2f54b1070b0293542c7958b371ab61f1c1043b619532643628fa812ccce0066f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Accuracy</topic><topic>Electroosmosis</topic><topic>Ion concentration</topic><topic>Ions</topic><topic>Modelling</topic><topic>Molecular dynamics</topic><topic>Nanochannels</topic><topic>Neural networks</topic><topic>Simulation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cao, Zhonglin</creatorcontrib><creatorcontrib>Wang, Yuyang</creatorcontrib><creatorcontrib>Lorsung, Cooper</creatorcontrib><creatorcontrib>Barati Farimani, Amir</creatorcontrib><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of chemical physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cao, Zhonglin</au><au>Wang, Yuyang</au><au>Lorsung, Cooper</au><au>Barati Farimani, Amir</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Neural network predicts ion concentration profiles under nanoconfinement</atitle><jtitle>The Journal of chemical physics</jtitle><date>2023-09-07</date><risdate>2023</risdate><volume>159</volume><issue>9</issue><issn>0021-9606</issn><eissn>1089-7690</eissn><coden>JCPSA6</coden><abstract>Modeling the ion concentration profile in nanochannel plays an important role in understanding the electrical double layer and electro-osmotic flow. Due to the non-negligible surface interaction and the effect of discrete solvent molecules, molecular dynamics (MD) simulation is often used as an essential tool to study the behavior of ions under nanoconfinement. Despite the accuracy of MD simulation in modeling nanoconfinement systems, it is computationally expensive. In this work, we propose neural network to predict ion concentration profiles in nanochannels with different configurations, including channel widths, ion molarity, and ion types. By modeling the ion concentration profile as a probability distribution, our neural network can serve as a much faster surrogate model for MD simulation with high accuracy. We further demonstrate the superior prediction accuracy of neural network over XGBoost. Finally, we demonstrated that neural network is flexible in predicting ion concentration profiles with different bin sizes. Overall, our deep learning model is a fast, flexible, and accurate surrogate model to predict ion concentration profiles in nanoconfinement.</abstract><cop>Melville</cop><pub>American Institute of Physics</pub><doi>10.1063/5.0147119</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0003-1410-9077</orcidid><orcidid>https://orcid.org/0000-0003-0723-6246</orcidid><orcidid>https://orcid.org/0000-0002-2952-8576</orcidid><orcidid>https://orcid.org/0000-0003-2096-1178</orcidid></addata></record> |
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subjects | Accuracy Electroosmosis Ion concentration Ions Modelling Molecular dynamics Nanochannels Neural networks Simulation |
title | Neural network predicts ion concentration profiles under nanoconfinement |
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