[Formula Omitted] Memory-Free Hardware Architecture for Burrows-Wheeler Transform
A novel hardware architecture for Burrows-Wheeler Transform (BWT) scheme is presented. The core idea is to have a memory-free strategy that does not involve any software overhead during BWT operation. This is achieved by introducing a register-file concept and utilizing basic digital logic circuits...
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Veröffentlicht in: | IEEE transactions on computers 2023-01, Vol.72 (7), p.2080 |
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description | A novel hardware architecture for Burrows-Wheeler Transform (BWT) scheme is presented. The core idea is to have a memory-free strategy that does not involve any software overhead during BWT operation. This is achieved by introducing a register-file concept and utilizing basic digital logic circuits to perform the entire BWT operation. Additionally, this is a kind of transformation scheme that does not utilize any kind of matrix during transformation, and thereby, it is free from run-time memory consumption. It efficiently handles the string terminating mechanism in the proposed design without involving any extra terminating symbol. This string terminator-free architecture eventually reduces additional operation and storage space to maintain the string, and thereby, the architecture does not necessitate any register read and write operations. This architecture exhibits efficient transformation without involving any indexing method or sorting mechanism during an inverse transformation operation. This architecture achieves [Formula Omitted] time complexity compared to [Formula Omitted] and [Formula Omitted] as experienced by the existing state-of-the-art approaches. |
doi_str_mv | 10.1109/TC.2022.3226295 |
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The core idea is to have a memory-free strategy that does not involve any software overhead during BWT operation. This is achieved by introducing a register-file concept and utilizing basic digital logic circuits to perform the entire BWT operation. Additionally, this is a kind of transformation scheme that does not utilize any kind of matrix during transformation, and thereby, it is free from run-time memory consumption. It efficiently handles the string terminating mechanism in the proposed design without involving any extra terminating symbol. This string terminator-free architecture eventually reduces additional operation and storage space to maintain the string, and thereby, the architecture does not necessitate any register read and write operations. This architecture exhibits efficient transformation without involving any indexing method or sorting mechanism during an inverse transformation operation. This architecture achieves [Formula Omitted] time complexity compared to [Formula Omitted] and [Formula Omitted] as experienced by the existing state-of-the-art approaches.</description><identifier>ISSN: 0018-9340</identifier><identifier>EISSN: 1557-9956</identifier><identifier>DOI: 10.1109/TC.2022.3226295</identifier><language>eng</language><publisher>New York: The Institute of Electrical and Electronics Engineers, Inc. (IEEE)</publisher><subject>Burrows-Wheeler transform ; Computer architecture ; Hardware ; Logic circuits ; Run time (computers) ; Strings</subject><ispartof>IEEE transactions on computers, 2023-01, Vol.72 (7), p.2080</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. 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Additionally, this is a kind of transformation scheme that does not utilize any kind of matrix during transformation, and thereby, it is free from run-time memory consumption. It efficiently handles the string terminating mechanism in the proposed design without involving any extra terminating symbol. This string terminator-free architecture eventually reduces additional operation and storage space to maintain the string, and thereby, the architecture does not necessitate any register read and write operations. This architecture exhibits efficient transformation without involving any indexing method or sorting mechanism during an inverse transformation operation. This architecture achieves [Formula Omitted] time complexity compared to [Formula Omitted] and [Formula Omitted] as experienced by the existing state-of-the-art approaches.</description><subject>Burrows-Wheeler transform</subject><subject>Computer architecture</subject><subject>Hardware</subject><subject>Logic circuits</subject><subject>Run time (computers)</subject><subject>Strings</subject><issn>0018-9340</issn><issn>1557-9956</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNqNisFqAjEUAINUcFs9ew30nPXl7WY1x1a6eBERFnooRYI-Udk19iVB-vfdQz_A0zDMCDHVkGsNdtYscwTEvECs0JqByLQxc2WtqZ5EBqAXyhYljMRzCBcAqBBsJrZftecutU5uunOMdPiWa-o8_6qaieTK8eHumOQb70_nSPuYejl6lu-J2d-D-jwRtcSyYXcNfejGYnh0baDJP1_Ea_3RLFfqxv4nUYi7i0987dMOF1hqXaLB4rHrD_pmRZA</recordid><startdate>20230101</startdate><enddate>20230101</enddate><creator>Ghosh, Surajeet</creator><creator>Sanchita Saha Ray</creator><general>The Institute of Electrical and Electronics Engineers, Inc. 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The core idea is to have a memory-free strategy that does not involve any software overhead during BWT operation. This is achieved by introducing a register-file concept and utilizing basic digital logic circuits to perform the entire BWT operation. Additionally, this is a kind of transformation scheme that does not utilize any kind of matrix during transformation, and thereby, it is free from run-time memory consumption. It efficiently handles the string terminating mechanism in the proposed design without involving any extra terminating symbol. This string terminator-free architecture eventually reduces additional operation and storage space to maintain the string, and thereby, the architecture does not necessitate any register read and write operations. This architecture exhibits efficient transformation without involving any indexing method or sorting mechanism during an inverse transformation operation. This architecture achieves [Formula Omitted] time complexity compared to [Formula Omitted] and [Formula Omitted] as experienced by the existing state-of-the-art approaches.</abstract><cop>New York</cop><pub>The Institute of Electrical and Electronics Engineers, Inc. (IEEE)</pub><doi>10.1109/TC.2022.3226295</doi></addata></record> |
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subjects | Burrows-Wheeler transform Computer architecture Hardware Logic circuits Run time (computers) Strings |
title | [Formula Omitted] Memory-Free Hardware Architecture for Burrows-Wheeler Transform |
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