The Effect of Glyoxylate Shunt Inactivation on Biosynthesis of Adipic Acid through Inverted Fatty Acid β-Oxidation by Escherichia coli Strains
Using Escherichia coli MG1655 lacI Q , ∆ ackA-pta , ∆ poxB , ∆ ldhA , ∆ adhE , ∆ fadE , P L -SD φ 10 - atoB , P trc- ideal-4 -SD φ 10 - fadB , P L -SD φ 10 - tesB , ∆ yciA as a core strain, derivatives capable of synthesizing adipic acid from glucose through the inverted fatty acid β-oxidation pathw...
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creator | Gulevich, A. Yu Skorokhodova, A. Yu Debabov, V. G. |
description | Using
Escherichia coli
MG1655
lacI
Q
, ∆
ackA-pta
, ∆
poxB
, ∆
ldhA
, ∆
adhE
, ∆
fadE
, P
L
-SD
φ
10
-
atoB
, P
trc-
ideal-4
-SD
φ
10
-
fadB
, P
L
-SD
φ
10
-
tesB
, ∆
yciA
as a core strain, derivatives capable of synthesizing adipic acid from glucose through the inverted fatty acid β-oxidation pathway were obtained. Biosynthesis of the target compound by recombinants was ensured by the primary condensation of acetyl-CoA and succinyl-CoA by 3-oxoacyl-CoA thiolase PaaJ and the catalysis of the final reaction of the cycle by acyl-CoA dehydrogenases FadE and FabI. Deletion in the strains of
sucCD
genes encoding components of succinyl-CoA synthase did not increase the relative intracellular availability of succinyl-CoA for target biosynthetic reactions and did not lead to an increase in adipic acid accumulation by the recombinants. The secretion of succinic and malic acids by the strains with an impaired tricarboxylic acid cycle remained almost unchanged, indicating the activity in the cells of glyoxylate shunt reactions that compete with the cycle reactions for isocitrate, required for succinyl-CoA formation. When isocitrate lyase, malate synthases A and G, and bifunctional kinase/phosphatase of isocitrate dehydrogenase were inactivated in strains due to deletion of the
aceBAK
operon genes and
glcB
, adipic acid synthesis by recombinants increased three-fold and reached 0.33 mM. |
doi_str_mv | 10.1134/S0003683823030080 |
format | Article |
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Escherichia coli
MG1655
lacI
Q
, ∆
ackA-pta
, ∆
poxB
, ∆
ldhA
, ∆
adhE
, ∆
fadE
, P
L
-SD
φ
10
-
atoB
, P
trc-
ideal-4
-SD
φ
10
-
fadB
, P
L
-SD
φ
10
-
tesB
, ∆
yciA
as a core strain, derivatives capable of synthesizing adipic acid from glucose through the inverted fatty acid β-oxidation pathway were obtained. Biosynthesis of the target compound by recombinants was ensured by the primary condensation of acetyl-CoA and succinyl-CoA by 3-oxoacyl-CoA thiolase PaaJ and the catalysis of the final reaction of the cycle by acyl-CoA dehydrogenases FadE and FabI. Deletion in the strains of
sucCD
genes encoding components of succinyl-CoA synthase did not increase the relative intracellular availability of succinyl-CoA for target biosynthetic reactions and did not lead to an increase in adipic acid accumulation by the recombinants. The secretion of succinic and malic acids by the strains with an impaired tricarboxylic acid cycle remained almost unchanged, indicating the activity in the cells of glyoxylate shunt reactions that compete with the cycle reactions for isocitrate, required for succinyl-CoA formation. When isocitrate lyase, malate synthases A and G, and bifunctional kinase/phosphatase of isocitrate dehydrogenase were inactivated in strains due to deletion of the
aceBAK
operon genes and
glcB
, adipic acid synthesis by recombinants increased three-fold and reached 0.33 mM.</description><identifier>ISSN: 0003-6838</identifier><identifier>EISSN: 1608-3024</identifier><identifier>DOI: 10.1134/S0003683823030080</identifier><language>eng</language><publisher>Moscow: Pleiades Publishing</publisher><subject>Adipic acid ; Biochemistry ; Biomedical and Life Sciences ; Biosynthesis ; Catalysis ; Deactivation ; Deletion ; E coli ; Escherichia coli ; Fatty acids ; Genes ; Inactivation ; Isocitrate dehydrogenase ; Isocitrate lyase ; Kinases ; Life Sciences ; Medical Microbiology ; Microbiology ; Nylon ; Oxidation ; Recombinants ; Succinyl-CoA ; Succinyl-CoA synthase ; Thiolase ; Tricarboxylic acid cycle</subject><ispartof>Applied biochemistry and microbiology, 2023-06, Vol.59 (3), p.267-274</ispartof><rights>The Author(s) 2023. ISSN 0003-6838, Applied Biochemistry and Microbiology, 2023, Vol. 59, No. 3, pp. 267–274. © The Author(s), 2023. This article is an open access publication, corrected publication 2023. Russian Text © The Author(s), 2023, published in Prikladnaya Biokhimiya i Mikrobiologiya, 2023, Vol. 59, No. 3, pp. 235–243.</rights><rights>The Author(s) 2023. ISSN 0003-6838, Applied Biochemistry and Microbiology, 2023, Vol. 59, No. 3, pp. 267–274. © The Author(s), 2023. This article is an open access publication, corrected publication 2023. Russian Text © The Author(s), 2023, published in Prikladnaya Biokhimiya i Mikrobiologiya, 2023, Vol. 59, No. 3, pp. 235–243. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c359t-7fea9a5b71fbe5f0334d7d13f7292606114828b2a2b9df1c9c0bd6664f7301d33</citedby><cites>FETCH-LOGICAL-c359t-7fea9a5b71fbe5f0334d7d13f7292606114828b2a2b9df1c9c0bd6664f7301d33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1134/S0003683823030080$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1134/S0003683823030080$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Gulevich, A. Yu</creatorcontrib><creatorcontrib>Skorokhodova, A. Yu</creatorcontrib><creatorcontrib>Debabov, V. G.</creatorcontrib><title>The Effect of Glyoxylate Shunt Inactivation on Biosynthesis of Adipic Acid through Inverted Fatty Acid β-Oxidation by Escherichia coli Strains</title><title>Applied biochemistry and microbiology</title><addtitle>Appl Biochem Microbiol</addtitle><description>Using
Escherichia coli
MG1655
lacI
Q
, ∆
ackA-pta
, ∆
poxB
, ∆
ldhA
, ∆
adhE
, ∆
fadE
, P
L
-SD
φ
10
-
atoB
, P
trc-
ideal-4
-SD
φ
10
-
fadB
, P
L
-SD
φ
10
-
tesB
, ∆
yciA
as a core strain, derivatives capable of synthesizing adipic acid from glucose through the inverted fatty acid β-oxidation pathway were obtained. Biosynthesis of the target compound by recombinants was ensured by the primary condensation of acetyl-CoA and succinyl-CoA by 3-oxoacyl-CoA thiolase PaaJ and the catalysis of the final reaction of the cycle by acyl-CoA dehydrogenases FadE and FabI. Deletion in the strains of
sucCD
genes encoding components of succinyl-CoA synthase did not increase the relative intracellular availability of succinyl-CoA for target biosynthetic reactions and did not lead to an increase in adipic acid accumulation by the recombinants. The secretion of succinic and malic acids by the strains with an impaired tricarboxylic acid cycle remained almost unchanged, indicating the activity in the cells of glyoxylate shunt reactions that compete with the cycle reactions for isocitrate, required for succinyl-CoA formation. When isocitrate lyase, malate synthases A and G, and bifunctional kinase/phosphatase of isocitrate dehydrogenase were inactivated in strains due to deletion of the
aceBAK
operon genes and
glcB
, adipic acid synthesis by recombinants increased three-fold and reached 0.33 mM.</description><subject>Adipic acid</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biosynthesis</subject><subject>Catalysis</subject><subject>Deactivation</subject><subject>Deletion</subject><subject>E coli</subject><subject>Escherichia coli</subject><subject>Fatty acids</subject><subject>Genes</subject><subject>Inactivation</subject><subject>Isocitrate dehydrogenase</subject><subject>Isocitrate lyase</subject><subject>Kinases</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Nylon</subject><subject>Oxidation</subject><subject>Recombinants</subject><subject>Succinyl-CoA</subject><subject>Succinyl-CoA synthase</subject><subject>Thiolase</subject><subject>Tricarboxylic acid cycle</subject><issn>0003-6838</issn><issn>1608-3024</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><recordid>eNp1kM1KAzEUhYMoWKsP4C7gejQ_85dlLW0tFLpoXQ-Z_HRSxklN0tJ5Ct_FB_GZnGEEFyJcuFzO-c6FA8A9Ro8Y0_hpgxCiaU5zQhFFKEcXYIRTlEcUkfgSjHo56vVrcOP9vjtZmrMR-NhWCs60ViJAq-Gibu25rXlQcFMdmwCXDRfBnHgwtoHdPBvr2yZUyhvfAxNpDkbAiTAShsrZ467qmJNyQUk45yG0g_b1Ga3PRg45ZQtnXlTKGVEZDoWtDdwEx03jb8GV5rVXdz97DF7ns-30JVqtF8vpZBUJmrAQZVpxxpMyw7pUiUaUxjKTmOqMMJKiFOM4J3lJOCmZ1FgwgUqZpmmsM4qwpHQMHobcg7PvR-VDsbdH13QvC5JjFuMMs6Rz4cElnPXeKV0cnHnjri0wKvreiz-9dwwZGN95m51yv8n_Q98y7IYV</recordid><startdate>20230601</startdate><enddate>20230601</enddate><creator>Gulevich, A. Yu</creator><creator>Skorokhodova, A. Yu</creator><creator>Debabov, V. G.</creator><general>Pleiades Publishing</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope></search><sort><creationdate>20230601</creationdate><title>The Effect of Glyoxylate Shunt Inactivation on Biosynthesis of Adipic Acid through Inverted Fatty Acid β-Oxidation by Escherichia coli Strains</title><author>Gulevich, A. Yu ; Skorokhodova, A. Yu ; Debabov, V. G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-7fea9a5b71fbe5f0334d7d13f7292606114828b2a2b9df1c9c0bd6664f7301d33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Adipic acid</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biosynthesis</topic><topic>Catalysis</topic><topic>Deactivation</topic><topic>Deletion</topic><topic>E coli</topic><topic>Escherichia coli</topic><topic>Fatty acids</topic><topic>Genes</topic><topic>Inactivation</topic><topic>Isocitrate dehydrogenase</topic><topic>Isocitrate lyase</topic><topic>Kinases</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Nylon</topic><topic>Oxidation</topic><topic>Recombinants</topic><topic>Succinyl-CoA</topic><topic>Succinyl-CoA synthase</topic><topic>Thiolase</topic><topic>Tricarboxylic acid cycle</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gulevich, A. Yu</creatorcontrib><creatorcontrib>Skorokhodova, A. Yu</creatorcontrib><creatorcontrib>Debabov, V. G.</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Applied biochemistry and microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gulevich, A. Yu</au><au>Skorokhodova, A. Yu</au><au>Debabov, V. G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Effect of Glyoxylate Shunt Inactivation on Biosynthesis of Adipic Acid through Inverted Fatty Acid β-Oxidation by Escherichia coli Strains</atitle><jtitle>Applied biochemistry and microbiology</jtitle><stitle>Appl Biochem Microbiol</stitle><date>2023-06-01</date><risdate>2023</risdate><volume>59</volume><issue>3</issue><spage>267</spage><epage>274</epage><pages>267-274</pages><issn>0003-6838</issn><eissn>1608-3024</eissn><abstract>Using
Escherichia coli
MG1655
lacI
Q
, ∆
ackA-pta
, ∆
poxB
, ∆
ldhA
, ∆
adhE
, ∆
fadE
, P
L
-SD
φ
10
-
atoB
, P
trc-
ideal-4
-SD
φ
10
-
fadB
, P
L
-SD
φ
10
-
tesB
, ∆
yciA
as a core strain, derivatives capable of synthesizing adipic acid from glucose through the inverted fatty acid β-oxidation pathway were obtained. Biosynthesis of the target compound by recombinants was ensured by the primary condensation of acetyl-CoA and succinyl-CoA by 3-oxoacyl-CoA thiolase PaaJ and the catalysis of the final reaction of the cycle by acyl-CoA dehydrogenases FadE and FabI. Deletion in the strains of
sucCD
genes encoding components of succinyl-CoA synthase did not increase the relative intracellular availability of succinyl-CoA for target biosynthetic reactions and did not lead to an increase in adipic acid accumulation by the recombinants. The secretion of succinic and malic acids by the strains with an impaired tricarboxylic acid cycle remained almost unchanged, indicating the activity in the cells of glyoxylate shunt reactions that compete with the cycle reactions for isocitrate, required for succinyl-CoA formation. When isocitrate lyase, malate synthases A and G, and bifunctional kinase/phosphatase of isocitrate dehydrogenase were inactivated in strains due to deletion of the
aceBAK
operon genes and
glcB
, adipic acid synthesis by recombinants increased three-fold and reached 0.33 mM.</abstract><cop>Moscow</cop><pub>Pleiades Publishing</pub><doi>10.1134/S0003683823030080</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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ispartof | Applied biochemistry and microbiology, 2023-06, Vol.59 (3), p.267-274 |
issn | 0003-6838 1608-3024 |
language | eng |
recordid | cdi_proquest_journals_2819417195 |
source | SpringerNature Journals |
subjects | Adipic acid Biochemistry Biomedical and Life Sciences Biosynthesis Catalysis Deactivation Deletion E coli Escherichia coli Fatty acids Genes Inactivation Isocitrate dehydrogenase Isocitrate lyase Kinases Life Sciences Medical Microbiology Microbiology Nylon Oxidation Recombinants Succinyl-CoA Succinyl-CoA synthase Thiolase Tricarboxylic acid cycle |
title | The Effect of Glyoxylate Shunt Inactivation on Biosynthesis of Adipic Acid through Inverted Fatty Acid β-Oxidation by Escherichia coli Strains |
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