Causal inference and large-scale expert validation shed light on the drivers of SDM accuracy and variance
Aim To develop a causal understanding of the drivers of Species distribution model (SDM) performance. Location United Kingdom (UK). Methods We measured the accuracy and variance of SDMs fitted for 518 species of invertebrate and plant in the UK. Our measure of variance reflects variation among repli...
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Veröffentlicht in: | Diversity & distributions 2023-06, Vol.29 (6), p.774-784 |
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creator | Boyd, Robin J. Harvey, Martin Roy, David B. Barber, Tony Haysom, Karen A. Macadam, Craig R. Morris, Roger K. A. Palmer, Carolyn Palmer, Stephen Preston, Chris D. Taylor, Pam Ward, Robert Ball, Stuart G. Pescott, Oliver L. |
description | Aim
To develop a causal understanding of the drivers of Species distribution model (SDM) performance.
Location
United Kingdom (UK).
Methods
We measured the accuracy and variance of SDMs fitted for 518 species of invertebrate and plant in the UK. Our measure of variance reflects variation among replicate model fits, and taxon experts assessed model accuracy. Using directed acyclic graphs, we developed a causal model depicting plausible effects of explanatory variables (e.g. species' prevalence, sample size) on SDM accuracy and variance and quantified those effects using a multilevel piecewise path model.
Results
According to our model, sample size and niche completeness (proportion of a species' niche covered by sampling) directly affect SDM accuracy and variance. Prevalence and range completeness have indirect effects mediated by sample size. Challenging conventional wisdom, we found that the effect of prevalence on SDM accuracy is positive. This reflects the facts that sample size has a positive effect on accuracy and larger sample sizes are possible for widespread species. It is possible, however, that the omission of an unobserved confounder biased this effect. Previous studies, which reported negative correlations between prevalence and SDM accuracy, conditioned on sample size.
Main conclusions
Our model explicates the causal basis of previously reported correlations between SDM performance and species/data characteristics. It also suggests that niche completeness has similarly large effects on SDM accuracy and variance as sample size. Analysts should consider niche completeness, or proxies thereof, in addition to sample size when deciding whether modelling is worthwhile. |
doi_str_mv | 10.1111/ddi.13698 |
format | Article |
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To develop a causal understanding of the drivers of Species distribution model (SDM) performance.
Location
United Kingdom (UK).
Methods
We measured the accuracy and variance of SDMs fitted for 518 species of invertebrate and plant in the UK. Our measure of variance reflects variation among replicate model fits, and taxon experts assessed model accuracy. Using directed acyclic graphs, we developed a causal model depicting plausible effects of explanatory variables (e.g. species' prevalence, sample size) on SDM accuracy and variance and quantified those effects using a multilevel piecewise path model.
Results
According to our model, sample size and niche completeness (proportion of a species' niche covered by sampling) directly affect SDM accuracy and variance. Prevalence and range completeness have indirect effects mediated by sample size. Challenging conventional wisdom, we found that the effect of prevalence on SDM accuracy is positive. This reflects the facts that sample size has a positive effect on accuracy and larger sample sizes are possible for widespread species. It is possible, however, that the omission of an unobserved confounder biased this effect. Previous studies, which reported negative correlations between prevalence and SDM accuracy, conditioned on sample size.
Main conclusions
Our model explicates the causal basis of previously reported correlations between SDM performance and species/data characteristics. It also suggests that niche completeness has similarly large effects on SDM accuracy and variance as sample size. Analysts should consider niche completeness, or proxies thereof, in addition to sample size when deciding whether modelling is worthwhile.</description><identifier>ISSN: 1366-9516</identifier><identifier>EISSN: 1472-4642</identifier><identifier>DOI: 10.1111/ddi.13698</identifier><language>eng</language><publisher>Oxford: Wiley</publisher><subject>Accuracy ; Algorithms ; causal inference ; Completeness ; directed acyclic graph ; expert elicitation ; Geographical distribution ; Graph theory ; Habitats ; Model accuracy ; Niches ; Regression analysis ; RESEARCH ARTICLE ; Species ; species distribution modelling ; Statistics ; Structural equation modeling ; structural equation modelling ; Variables ; Variance analysis</subject><ispartof>Diversity & distributions, 2023-06, Vol.29 (6), p.774-784</ispartof><rights>2023 The Authors</rights><rights>2023 The Authors. published by John Wiley & Sons Ltd.</rights><rights>2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3548-cad174f40a33aa124b963972d3ca03538a1cc9f87f47290b4416875c6cae700d3</citedby><cites>FETCH-LOGICAL-c3548-cad174f40a33aa124b963972d3ca03538a1cc9f87f47290b4416875c6cae700d3</cites><orcidid>0000-0002-7973-9865</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/48727341$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/48727341$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,860,1411,11543,25334,27903,27904,45553,45554,46030,46454,54502,54508</link.rule.ids><linktorsrc>$$Uhttps://www.jstor.org/stable/48727341$$EView_record_in_JSTOR$$FView_record_in_$$GJSTOR</linktorsrc></links><search><creatorcontrib>Boyd, Robin J.</creatorcontrib><creatorcontrib>Harvey, Martin</creatorcontrib><creatorcontrib>Roy, David B.</creatorcontrib><creatorcontrib>Barber, Tony</creatorcontrib><creatorcontrib>Haysom, Karen A.</creatorcontrib><creatorcontrib>Macadam, Craig R.</creatorcontrib><creatorcontrib>Morris, Roger K. A.</creatorcontrib><creatorcontrib>Palmer, Carolyn</creatorcontrib><creatorcontrib>Palmer, Stephen</creatorcontrib><creatorcontrib>Preston, Chris D.</creatorcontrib><creatorcontrib>Taylor, Pam</creatorcontrib><creatorcontrib>Ward, Robert</creatorcontrib><creatorcontrib>Ball, Stuart G.</creatorcontrib><creatorcontrib>Pescott, Oliver L.</creatorcontrib><title>Causal inference and large-scale expert validation shed light on the drivers of SDM accuracy and variance</title><title>Diversity & distributions</title><description>Aim
To develop a causal understanding of the drivers of Species distribution model (SDM) performance.
Location
United Kingdom (UK).
Methods
We measured the accuracy and variance of SDMs fitted for 518 species of invertebrate and plant in the UK. Our measure of variance reflects variation among replicate model fits, and taxon experts assessed model accuracy. Using directed acyclic graphs, we developed a causal model depicting plausible effects of explanatory variables (e.g. species' prevalence, sample size) on SDM accuracy and variance and quantified those effects using a multilevel piecewise path model.
Results
According to our model, sample size and niche completeness (proportion of a species' niche covered by sampling) directly affect SDM accuracy and variance. Prevalence and range completeness have indirect effects mediated by sample size. Challenging conventional wisdom, we found that the effect of prevalence on SDM accuracy is positive. This reflects the facts that sample size has a positive effect on accuracy and larger sample sizes are possible for widespread species. It is possible, however, that the omission of an unobserved confounder biased this effect. Previous studies, which reported negative correlations between prevalence and SDM accuracy, conditioned on sample size.
Main conclusions
Our model explicates the causal basis of previously reported correlations between SDM performance and species/data characteristics. It also suggests that niche completeness has similarly large effects on SDM accuracy and variance as sample size. Analysts should consider niche completeness, or proxies thereof, in addition to sample size when deciding whether modelling is worthwhile.</description><subject>Accuracy</subject><subject>Algorithms</subject><subject>causal inference</subject><subject>Completeness</subject><subject>directed acyclic graph</subject><subject>expert elicitation</subject><subject>Geographical distribution</subject><subject>Graph theory</subject><subject>Habitats</subject><subject>Model accuracy</subject><subject>Niches</subject><subject>Regression analysis</subject><subject>RESEARCH ARTICLE</subject><subject>Species</subject><subject>species distribution modelling</subject><subject>Statistics</subject><subject>Structural equation modeling</subject><subject>structural equation modelling</subject><subject>Variables</subject><subject>Variance analysis</subject><issn>1366-9516</issn><issn>1472-4642</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp1kMtOwzAQRS0EEqWw4AOQLLFikeJX7GSJWh6VilgAa2tqO62rkBQ7LfTvMQ2wYzYzI517R3MROqdkRFNdW-tHlMuyOEADKhTLhBTsMM1cyqzMqTxGJzGuCCGc52yA_Bg2EWrsm8oF1xiHobG4hrBwWTRQO-w-1y50eAu1t9D5tsFx6RLiF8sOp61bOmyD37oQcVvh58kjBmM2Acxu77WF4CEZn6KjCurozn76EL3e3b6MH7LZ0_10fDPLDM9FkRmwVIlKEOAcgDIxLyUvFbPcAOE5L4AaU1aFqtJ3JZkLQWWhciMNOEWI5UN02fuuQ_u-cbHTq3YTmnRSs4IKSQVleaKuesqENsbgKr0O_g3CTlOiv5PUKUm9TzKx1z374Wu3-x_Uk8n0V3HRK1axa8OfQhSKKS4o_wJegn3h</recordid><startdate>20230601</startdate><enddate>20230601</enddate><creator>Boyd, Robin J.</creator><creator>Harvey, Martin</creator><creator>Roy, David B.</creator><creator>Barber, Tony</creator><creator>Haysom, Karen A.</creator><creator>Macadam, Craig R.</creator><creator>Morris, Roger K. A.</creator><creator>Palmer, Carolyn</creator><creator>Palmer, Stephen</creator><creator>Preston, Chris D.</creator><creator>Taylor, Pam</creator><creator>Ward, Robert</creator><creator>Ball, Stuart G.</creator><creator>Pescott, Oliver L.</creator><general>Wiley</general><general>John Wiley & Sons, Inc</general><scope>24P</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7XB</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><orcidid>https://orcid.org/0000-0002-7973-9865</orcidid></search><sort><creationdate>20230601</creationdate><title>Causal inference and large-scale expert validation shed light on the drivers of SDM accuracy and variance</title><author>Boyd, Robin J. ; Harvey, Martin ; Roy, David B. ; Barber, Tony ; Haysom, Karen A. ; Macadam, Craig R. ; Morris, Roger K. A. ; Palmer, Carolyn ; Palmer, Stephen ; Preston, Chris D. ; Taylor, Pam ; Ward, Robert ; Ball, Stuart G. ; Pescott, Oliver L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3548-cad174f40a33aa124b963972d3ca03538a1cc9f87f47290b4416875c6cae700d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Accuracy</topic><topic>Algorithms</topic><topic>causal inference</topic><topic>Completeness</topic><topic>directed acyclic graph</topic><topic>expert elicitation</topic><topic>Geographical distribution</topic><topic>Graph theory</topic><topic>Habitats</topic><topic>Model accuracy</topic><topic>Niches</topic><topic>Regression analysis</topic><topic>RESEARCH ARTICLE</topic><topic>Species</topic><topic>species distribution modelling</topic><topic>Statistics</topic><topic>Structural equation modeling</topic><topic>structural equation modelling</topic><topic>Variables</topic><topic>Variance analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Boyd, Robin J.</creatorcontrib><creatorcontrib>Harvey, Martin</creatorcontrib><creatorcontrib>Roy, David B.</creatorcontrib><creatorcontrib>Barber, Tony</creatorcontrib><creatorcontrib>Haysom, Karen A.</creatorcontrib><creatorcontrib>Macadam, Craig R.</creatorcontrib><creatorcontrib>Morris, Roger K. A.</creatorcontrib><creatorcontrib>Palmer, Carolyn</creatorcontrib><creatorcontrib>Palmer, Stephen</creatorcontrib><creatorcontrib>Preston, Chris D.</creatorcontrib><creatorcontrib>Taylor, Pam</creatorcontrib><creatorcontrib>Ward, Robert</creatorcontrib><creatorcontrib>Ball, Stuart G.</creatorcontrib><creatorcontrib>Pescott, Oliver L.</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><jtitle>Diversity & distributions</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Boyd, Robin J.</au><au>Harvey, Martin</au><au>Roy, David B.</au><au>Barber, Tony</au><au>Haysom, Karen A.</au><au>Macadam, Craig R.</au><au>Morris, Roger K. A.</au><au>Palmer, Carolyn</au><au>Palmer, Stephen</au><au>Preston, Chris D.</au><au>Taylor, Pam</au><au>Ward, Robert</au><au>Ball, Stuart G.</au><au>Pescott, Oliver L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Causal inference and large-scale expert validation shed light on the drivers of SDM accuracy and variance</atitle><jtitle>Diversity & distributions</jtitle><date>2023-06-01</date><risdate>2023</risdate><volume>29</volume><issue>6</issue><spage>774</spage><epage>784</epage><pages>774-784</pages><issn>1366-9516</issn><eissn>1472-4642</eissn><abstract>Aim
To develop a causal understanding of the drivers of Species distribution model (SDM) performance.
Location
United Kingdom (UK).
Methods
We measured the accuracy and variance of SDMs fitted for 518 species of invertebrate and plant in the UK. Our measure of variance reflects variation among replicate model fits, and taxon experts assessed model accuracy. Using directed acyclic graphs, we developed a causal model depicting plausible effects of explanatory variables (e.g. species' prevalence, sample size) on SDM accuracy and variance and quantified those effects using a multilevel piecewise path model.
Results
According to our model, sample size and niche completeness (proportion of a species' niche covered by sampling) directly affect SDM accuracy and variance. Prevalence and range completeness have indirect effects mediated by sample size. Challenging conventional wisdom, we found that the effect of prevalence on SDM accuracy is positive. This reflects the facts that sample size has a positive effect on accuracy and larger sample sizes are possible for widespread species. It is possible, however, that the omission of an unobserved confounder biased this effect. Previous studies, which reported negative correlations between prevalence and SDM accuracy, conditioned on sample size.
Main conclusions
Our model explicates the causal basis of previously reported correlations between SDM performance and species/data characteristics. It also suggests that niche completeness has similarly large effects on SDM accuracy and variance as sample size. Analysts should consider niche completeness, or proxies thereof, in addition to sample size when deciding whether modelling is worthwhile.</abstract><cop>Oxford</cop><pub>Wiley</pub><doi>10.1111/ddi.13698</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-7973-9865</orcidid><oa>free_for_read</oa></addata></record> |
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source | Jstor Journals Open Access |
subjects | Accuracy Algorithms causal inference Completeness directed acyclic graph expert elicitation Geographical distribution Graph theory Habitats Model accuracy Niches Regression analysis RESEARCH ARTICLE Species species distribution modelling Statistics Structural equation modeling structural equation modelling Variables Variance analysis |
title | Causal inference and large-scale expert validation shed light on the drivers of SDM accuracy and variance |
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