The Genetic Diversity of mtDNA of Apostichopus japonicus (Selenka, 1867) (Echinodermata: Holothuroidea) in Peter the Great Gulf, Sea of Japan
The genetic diversity of the Far Eastern sea cucumber Apostichopus japonicus (Selenka, 1867), which lives in Peter the Great, Sea of Japan, has been studied. Five samples were analyzed using the mitochondrial DNA’s COI gene fragment. A total of 16 haplotypes were identified, with high haplotype dive...
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| Veröffentlicht in: | Russian journal of marine biology 2023-02, Vol.49 (1), p.38-46 |
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| creator | Yagodina, V. D. Brykov, V. A. |
| description | The genetic diversity of the Far Eastern sea cucumber
Apostichopus japonicus
(Selenka, 1867), which lives in Peter the Great, Sea of Japan, has been studied. Five samples were analyzed using the mitochondrial DNA’s
COI
gene fragment. A total of 16 haplotypes were identified, with high haplotype diversity (0.86767 ± 0.01800) and low nucleotide diversity (0.00759 ± 0.00025). The results using AMOVA and pairwise Fst did not reveal significant genetic differences between the samples from Peter the Great Gulf. Based on the data we obtained and the structure of the haplotype network, it was suggested that the Far Eastern sea cucumber lives in nonequilibrium conditions. This relates to the uneven distribution of juveniles, depending on the hydrological regime, the type of soil and the development of mariculture in the water area, as well as a significant illegal catch. |
| doi_str_mv | 10.1134/S1063074023010108 |
| format | Article |
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Apostichopus japonicus
(Selenka, 1867), which lives in Peter the Great, Sea of Japan, has been studied. Five samples were analyzed using the mitochondrial DNA’s
COI
gene fragment. A total of 16 haplotypes were identified, with high haplotype diversity (0.86767 ± 0.01800) and low nucleotide diversity (0.00759 ± 0.00025). The results using AMOVA and pairwise Fst did not reveal significant genetic differences between the samples from Peter the Great Gulf. Based on the data we obtained and the structure of the haplotype network, it was suggested that the Far Eastern sea cucumber lives in nonequilibrium conditions. This relates to the uneven distribution of juveniles, depending on the hydrological regime, the type of soil and the development of mariculture in the water area, as well as a significant illegal catch.</description><identifier>ISSN: 1063-0740</identifier><identifier>EISSN: 1608-3377</identifier><identifier>DOI: 10.1134/S1063074023010108</identifier><language>eng</language><publisher>Moscow: Pleiades Publishing</publisher><subject>Apostichopus japonicus ; Biomedical and Life Sciences ; COI protein ; Freshwater & Marine Ecology ; Genetic diversity ; Genetic variation ; Haplotypes ; Hydrologic regime ; Juveniles ; Life Sciences ; Marine aquaculture ; Marine invertebrates ; Mitochondrial DNA ; Nucleotides ; Original Papers ; Soil types</subject><ispartof>Russian journal of marine biology, 2023-02, Vol.49 (1), p.38-46</ispartof><rights>Pleiades Publishing, Ltd. 2023. ISSN 1063-0740, Russian Journal of Marine Biology, 2023, Vol. 49, No. 1, pp. 38–46. © Pleiades Publishing, Ltd., 2023. Russian Text © The Author(s), 2023, published in Biologiya Morya.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c316t-79a4846d4fb37ad788251c3ad1df60d431c2ce97a1fd47889ca83378580e6ecb3</citedby><cites>FETCH-LOGICAL-c316t-79a4846d4fb37ad788251c3ad1df60d431c2ce97a1fd47889ca83378580e6ecb3</cites><orcidid>0000-0002-1318-8060 ; 0000-0002-3304-6422</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1134/S1063074023010108$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1134/S1063074023010108$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids></links><search><creatorcontrib>Yagodina, V. D.</creatorcontrib><creatorcontrib>Brykov, V. A.</creatorcontrib><title>The Genetic Diversity of mtDNA of Apostichopus japonicus (Selenka, 1867) (Echinodermata: Holothuroidea) in Peter the Great Gulf, Sea of Japan</title><title>Russian journal of marine biology</title><addtitle>Russ J Mar Biol</addtitle><description>The genetic diversity of the Far Eastern sea cucumber
Apostichopus japonicus
(Selenka, 1867), which lives in Peter the Great, Sea of Japan, has been studied. Five samples were analyzed using the mitochondrial DNA’s
COI
gene fragment. A total of 16 haplotypes were identified, with high haplotype diversity (0.86767 ± 0.01800) and low nucleotide diversity (0.00759 ± 0.00025). The results using AMOVA and pairwise Fst did not reveal significant genetic differences between the samples from Peter the Great Gulf. Based on the data we obtained and the structure of the haplotype network, it was suggested that the Far Eastern sea cucumber lives in nonequilibrium conditions. This relates to the uneven distribution of juveniles, depending on the hydrological regime, the type of soil and the development of mariculture in the water area, as well as a significant illegal catch.</description><subject>Apostichopus japonicus</subject><subject>Biomedical and Life Sciences</subject><subject>COI protein</subject><subject>Freshwater & Marine Ecology</subject><subject>Genetic diversity</subject><subject>Genetic variation</subject><subject>Haplotypes</subject><subject>Hydrologic regime</subject><subject>Juveniles</subject><subject>Life Sciences</subject><subject>Marine aquaculture</subject><subject>Marine invertebrates</subject><subject>Mitochondrial DNA</subject><subject>Nucleotides</subject><subject>Original Papers</subject><subject>Soil types</subject><issn>1063-0740</issn><issn>1608-3377</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNp1kNFKwzAYhYMoOKcP4F3AmwmrJk2Xpt6NbW7KUGHzumTpX9vZNTVJhT2E72zKBC9EcpED5zv_gYPQJSU3lLLodkUJZySOSMgI9U8coR7lRASMxfGx194OOv8UnVm7JR4hPOqhr3UBeA41uFLhafkJxpZuj3WOd276NO7EuNHWu4VuWou3stF1qbwarKCC-l0OMRU8vsaDmSrKWmdgdtLJO7zQlXZFa3SZgbzGZY1fwIHBris0IB2et1U-xCuQXcujbGR9jk5yWVm4-Pn76PV-tp4sguXz_GEyXgaKUe6COJGRiHgW5RsWyywWIhxRxWRGs5yTLGJUhQqSWNI8i7ybKCn8DmIkCHBQG9ZHV4e7jdEfLViXbnVral-ZhoIQTyZh6Cl6oJTR1hrI08aUO2n2KSVpt3r6Z3WfCQ8Z69n6Dczv5f9D3wDagg8</recordid><startdate>20230201</startdate><enddate>20230201</enddate><creator>Yagodina, V. D.</creator><creator>Brykov, V. A.</creator><general>Pleiades Publishing</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><orcidid>https://orcid.org/0000-0002-1318-8060</orcidid><orcidid>https://orcid.org/0000-0002-3304-6422</orcidid></search><sort><creationdate>20230201</creationdate><title>The Genetic Diversity of mtDNA of Apostichopus japonicus (Selenka, 1867) (Echinodermata: Holothuroidea) in Peter the Great Gulf, Sea of Japan</title><author>Yagodina, V. D. ; Brykov, V. A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c316t-79a4846d4fb37ad788251c3ad1df60d431c2ce97a1fd47889ca83378580e6ecb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Apostichopus japonicus</topic><topic>Biomedical and Life Sciences</topic><topic>COI protein</topic><topic>Freshwater & Marine Ecology</topic><topic>Genetic diversity</topic><topic>Genetic variation</topic><topic>Haplotypes</topic><topic>Hydrologic regime</topic><topic>Juveniles</topic><topic>Life Sciences</topic><topic>Marine aquaculture</topic><topic>Marine invertebrates</topic><topic>Mitochondrial DNA</topic><topic>Nucleotides</topic><topic>Original Papers</topic><topic>Soil types</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yagodina, V. D.</creatorcontrib><creatorcontrib>Brykov, V. A.</creatorcontrib><collection>CrossRef</collection><collection>Oceanic Abstracts</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Russian journal of marine biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yagodina, V. D.</au><au>Brykov, V. A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Genetic Diversity of mtDNA of Apostichopus japonicus (Selenka, 1867) (Echinodermata: Holothuroidea) in Peter the Great Gulf, Sea of Japan</atitle><jtitle>Russian journal of marine biology</jtitle><stitle>Russ J Mar Biol</stitle><date>2023-02-01</date><risdate>2023</risdate><volume>49</volume><issue>1</issue><spage>38</spage><epage>46</epage><pages>38-46</pages><issn>1063-0740</issn><eissn>1608-3377</eissn><abstract>The genetic diversity of the Far Eastern sea cucumber
Apostichopus japonicus
(Selenka, 1867), which lives in Peter the Great, Sea of Japan, has been studied. Five samples were analyzed using the mitochondrial DNA’s
COI
gene fragment. A total of 16 haplotypes were identified, with high haplotype diversity (0.86767 ± 0.01800) and low nucleotide diversity (0.00759 ± 0.00025). The results using AMOVA and pairwise Fst did not reveal significant genetic differences between the samples from Peter the Great Gulf. Based on the data we obtained and the structure of the haplotype network, it was suggested that the Far Eastern sea cucumber lives in nonequilibrium conditions. This relates to the uneven distribution of juveniles, depending on the hydrological regime, the type of soil and the development of mariculture in the water area, as well as a significant illegal catch.</abstract><cop>Moscow</cop><pub>Pleiades Publishing</pub><doi>10.1134/S1063074023010108</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-1318-8060</orcidid><orcidid>https://orcid.org/0000-0002-3304-6422</orcidid></addata></record> |
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| ispartof | Russian journal of marine biology, 2023-02, Vol.49 (1), p.38-46 |
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| subjects | Apostichopus japonicus Biomedical and Life Sciences COI protein Freshwater & Marine Ecology Genetic diversity Genetic variation Haplotypes Hydrologic regime Juveniles Life Sciences Marine aquaculture Marine invertebrates Mitochondrial DNA Nucleotides Original Papers Soil types |
| title | The Genetic Diversity of mtDNA of Apostichopus japonicus (Selenka, 1867) (Echinodermata: Holothuroidea) in Peter the Great Gulf, Sea of Japan |
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