Metaproteomic and gene expression analysis of interspecies interactions in a PAH-degrading synthetic microbial consortium constructed with the key microbes of a natural consortium
Polycyclic Aromatic Hydrocarbons (PAHs) impose adverse effects on the environment and human life. The use of synthetic microbial consortia is promising in bioremediation of contaminated sites with these pollutants. However, the design of consortia taking advantage of natural interactions has been po...
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| Veröffentlicht in: | Biodegradation (Dordrecht) 2023-04, Vol.34 (2), p.181-197 |
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| creator | Nieto, Esteban E. Macchi, Marianela Valacco, María P. Festa, Sabrina Morelli, Irma S. Coppotelli, Bibiana M. |
| description | Polycyclic Aromatic Hydrocarbons (PAHs) impose adverse effects on the environment and human life. The use of synthetic microbial consortia is promising in bioremediation of contaminated sites with these pollutants. However, the design of consortia taking advantage of natural interactions has been poorly explored. In this study, a dual synthetic bacterial consortium (DSC_AB) was constructed with two key members (
Sphingobium
sp. AM and
Burkholderia
sp. Bk), of a natural PAH degrading consortium. DSC_AB showed significantly enhanced degradation of PAHs and toxic intermediary metabolites relative to the axenic cultures, indicating the existence of synergistic relationships. Metaproteomic and gene-expression analyses were applied to obtain a view of bacterial performance during phenanthrene removal. Overexpression of the Bk genes,
naph, biph, tol
and
sal
and the AM gene,
ahdB,
in DSC_AB relative to axenic cultures, demonstrated that both strains are actively participating in degradation, which gave evidence of cross-feeding. Several proteins related to stress response were under-expressed in DSC_AB relative to axenic cultures, indicating that the division of labour reduces cellular stress, increasing the efficiency of degradation. This is the one of the first works revealing bacterial relationships during PAH removal in a synthetic consortium applying an omics approach. Our findings could be used to develop criteria for evaluating the potential effectiveness of synthetic bacterial consortia in bioremediation. |
| doi_str_mv | 10.1007/s10532-022-10012-3 |
| format | Article |
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Sphingobium
sp. AM and
Burkholderia
sp. Bk), of a natural PAH degrading consortium. DSC_AB showed significantly enhanced degradation of PAHs and toxic intermediary metabolites relative to the axenic cultures, indicating the existence of synergistic relationships. Metaproteomic and gene-expression analyses were applied to obtain a view of bacterial performance during phenanthrene removal. Overexpression of the Bk genes,
naph, biph, tol
and
sal
and the AM gene,
ahdB,
in DSC_AB relative to axenic cultures, demonstrated that both strains are actively participating in degradation, which gave evidence of cross-feeding. Several proteins related to stress response were under-expressed in DSC_AB relative to axenic cultures, indicating that the division of labour reduces cellular stress, increasing the efficiency of degradation. This is the one of the first works revealing bacterial relationships during PAH removal in a synthetic consortium applying an omics approach. Our findings could be used to develop criteria for evaluating the potential effectiveness of synthetic bacterial consortia in bioremediation.</description><identifier>ISSN: 0923-9820</identifier><identifier>EISSN: 1572-9729</identifier><identifier>DOI: 10.1007/s10532-022-10012-3</identifier><identifier>PMID: 36596914</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Analysis ; Aquatic Pollution ; Aromatic compounds ; Aromatic hydrocarbons ; Bacteria ; Biodegradation, Environmental ; Biomedical and Life Sciences ; Bioremediation ; Cellular stress response ; Consortia ; Cultures ; Degradation ; Division of labor ; Environmental effects ; Gene expression ; Gene Expression Profiling ; Genes ; Genetic research ; Geochemistry ; Germfree ; Humans ; Labour ; Life Sciences ; Metabolites ; Microbial Consortia - genetics ; Microbiological strains ; Microbiology ; Microorganisms ; Original Paper ; Phenanthrene ; Polycyclic aromatic hydrocarbons ; Polycyclic Aromatic Hydrocarbons - metabolism ; Removal ; Soil Microbiology ; Soil Pollutants - metabolism ; Soil Science & Conservation ; Sphingomonadaceae - metabolism ; Syntrophism ; Terrestrial Pollution ; Waste Management/Waste Technology ; Waste Water Technology ; Water Management ; Water Pollution Control</subject><ispartof>Biodegradation (Dordrecht), 2023-04, Vol.34 (2), p.181-197</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer Nature B.V.</rights><rights>COPYRIGHT 2023 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c414t-465127aa91306fc84a5f62f7928baa6dfb6d87225b37a28812e866fd3431c5473</citedby><cites>FETCH-LOGICAL-c414t-465127aa91306fc84a5f62f7928baa6dfb6d87225b37a28812e866fd3431c5473</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10532-022-10012-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10532-022-10012-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27922,27923,41486,42555,51317</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36596914$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nieto, Esteban E.</creatorcontrib><creatorcontrib>Macchi, Marianela</creatorcontrib><creatorcontrib>Valacco, María P.</creatorcontrib><creatorcontrib>Festa, Sabrina</creatorcontrib><creatorcontrib>Morelli, Irma S.</creatorcontrib><creatorcontrib>Coppotelli, Bibiana M.</creatorcontrib><title>Metaproteomic and gene expression analysis of interspecies interactions in a PAH-degrading synthetic microbial consortium constructed with the key microbes of a natural consortium</title><title>Biodegradation (Dordrecht)</title><addtitle>Biodegradation</addtitle><addtitle>Biodegradation</addtitle><description>Polycyclic Aromatic Hydrocarbons (PAHs) impose adverse effects on the environment and human life. The use of synthetic microbial consortia is promising in bioremediation of contaminated sites with these pollutants. However, the design of consortia taking advantage of natural interactions has been poorly explored. In this study, a dual synthetic bacterial consortium (DSC_AB) was constructed with two key members (
Sphingobium
sp. AM and
Burkholderia
sp. Bk), of a natural PAH degrading consortium. DSC_AB showed significantly enhanced degradation of PAHs and toxic intermediary metabolites relative to the axenic cultures, indicating the existence of synergistic relationships. Metaproteomic and gene-expression analyses were applied to obtain a view of bacterial performance during phenanthrene removal. Overexpression of the Bk genes,
naph, biph, tol
and
sal
and the AM gene,
ahdB,
in DSC_AB relative to axenic cultures, demonstrated that both strains are actively participating in degradation, which gave evidence of cross-feeding. Several proteins related to stress response were under-expressed in DSC_AB relative to axenic cultures, indicating that the division of labour reduces cellular stress, increasing the efficiency of degradation. This is the one of the first works revealing bacterial relationships during PAH removal in a synthetic consortium applying an omics approach. Our findings could be used to develop criteria for evaluating the potential effectiveness of synthetic bacterial consortia in bioremediation.</description><subject>Analysis</subject><subject>Aquatic Pollution</subject><subject>Aromatic compounds</subject><subject>Aromatic hydrocarbons</subject><subject>Bacteria</subject><subject>Biodegradation, Environmental</subject><subject>Biomedical and Life Sciences</subject><subject>Bioremediation</subject><subject>Cellular stress response</subject><subject>Consortia</subject><subject>Cultures</subject><subject>Degradation</subject><subject>Division of labor</subject><subject>Environmental effects</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Genes</subject><subject>Genetic research</subject><subject>Geochemistry</subject><subject>Germfree</subject><subject>Humans</subject><subject>Labour</subject><subject>Life Sciences</subject><subject>Metabolites</subject><subject>Microbial Consortia - genetics</subject><subject>Microbiological strains</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Original Paper</subject><subject>Phenanthrene</subject><subject>Polycyclic aromatic hydrocarbons</subject><subject>Polycyclic Aromatic Hydrocarbons - metabolism</subject><subject>Removal</subject><subject>Soil Microbiology</subject><subject>Soil Pollutants - metabolism</subject><subject>Soil Science & Conservation</subject><subject>Sphingomonadaceae - metabolism</subject><subject>Syntrophism</subject><subject>Terrestrial Pollution</subject><subject>Waste Management/Waste Technology</subject><subject>Waste Water Technology</subject><subject>Water Management</subject><subject>Water Pollution 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S.</au><au>Coppotelli, Bibiana M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metaproteomic and gene expression analysis of interspecies interactions in a PAH-degrading synthetic microbial consortium constructed with the key microbes of a natural consortium</atitle><jtitle>Biodegradation (Dordrecht)</jtitle><stitle>Biodegradation</stitle><addtitle>Biodegradation</addtitle><date>2023-04-01</date><risdate>2023</risdate><volume>34</volume><issue>2</issue><spage>181</spage><epage>197</epage><pages>181-197</pages><issn>0923-9820</issn><eissn>1572-9729</eissn><abstract>Polycyclic Aromatic Hydrocarbons (PAHs) impose adverse effects on the environment and human life. 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Sphingobium
sp. AM and
Burkholderia
sp. Bk), of a natural PAH degrading consortium. DSC_AB showed significantly enhanced degradation of PAHs and toxic intermediary metabolites relative to the axenic cultures, indicating the existence of synergistic relationships. Metaproteomic and gene-expression analyses were applied to obtain a view of bacterial performance during phenanthrene removal. Overexpression of the Bk genes,
naph, biph, tol
and
sal
and the AM gene,
ahdB,
in DSC_AB relative to axenic cultures, demonstrated that both strains are actively participating in degradation, which gave evidence of cross-feeding. Several proteins related to stress response were under-expressed in DSC_AB relative to axenic cultures, indicating that the division of labour reduces cellular stress, increasing the efficiency of degradation. This is the one of the first works revealing bacterial relationships during PAH removal in a synthetic consortium applying an omics approach. Our findings could be used to develop criteria for evaluating the potential effectiveness of synthetic bacterial consortia in bioremediation.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>36596914</pmid><doi>10.1007/s10532-022-10012-3</doi><tpages>17</tpages></addata></record> |
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| subjects | Analysis Aquatic Pollution Aromatic compounds Aromatic hydrocarbons Bacteria Biodegradation, Environmental Biomedical and Life Sciences Bioremediation Cellular stress response Consortia Cultures Degradation Division of labor Environmental effects Gene expression Gene Expression Profiling Genes Genetic research Geochemistry Germfree Humans Labour Life Sciences Metabolites Microbial Consortia - genetics Microbiological strains Microbiology Microorganisms Original Paper Phenanthrene Polycyclic aromatic hydrocarbons Polycyclic Aromatic Hydrocarbons - metabolism Removal Soil Microbiology Soil Pollutants - metabolism Soil Science & Conservation Sphingomonadaceae - metabolism Syntrophism Terrestrial Pollution Waste Management/Waste Technology Waste Water Technology Water Management Water Pollution Control |
| title | Metaproteomic and gene expression analysis of interspecies interactions in a PAH-degrading synthetic microbial consortium constructed with the key microbes of a natural consortium |
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