Identification of the prognostic, diagnostic, and biological significance of the miR‐148a‐3p/cathepsin A axis in hepatocellular carcinoma
A comprehensive analysis of the prognostic, diagnostic, and biological significance of miR‐148a‐3p and cathepsin A (CTSA) in hepatocellular carcinoma (HCC) was performed using bioinformatics algorithms with The Cancer Genome Atlas (TCGA) data. miR‐148a‐3p and CTSA gene expression in HCC tissues and...
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| Veröffentlicht in: | Journal of biochemical and molecular toxicology 2022-12, Vol.36 (12), p.e23208-n/a |
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| creator | Zhao, Xiulei Chai, Wei Wang, Tiegong Chen, Xiongfei Zhang, Lei Li, Fengshan Liu, Ruhai |
| description | A comprehensive analysis of the prognostic, diagnostic, and biological significance of miR‐148a‐3p and cathepsin A (CTSA) in hepatocellular carcinoma (HCC) was performed using bioinformatics algorithms with The Cancer Genome Atlas (TCGA) data. miR‐148a‐3p and CTSA gene expression in HCC tissues and nontumor specimens was analyzed using TCGA database with R software. CTSA staining analysis was validated using the Human Protein Atlas database. Prognostic, diagnostic, gene set enrichment, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and immune infiltration analyses were implemented using the TCGA database with R software. Based on TCGA data and our cohort populations, CTSA expression was significantly elevated in HCC tissues compared with nontumor specimens. A significant negative correlation between miR‐148a‐3p and CTSA was observed in the TCGA data and our cohort population. Mechanistically, CTSA was a direct gene target of miR‐148a‐3p. Both CTSA and miR‐148a‐3p could serve as prognostic and diagnostic indicators in HCC. miR‐148a‐3p expression was significantly and negatively correlated with the StromalScore, ImmuneScore, and ESTIMATEScore in patients with liver cancer. miR‐148a‐3p mimic‐mediated apoptosis and the inhibition of HCC cell growth and migration were counteracted by CTSA overexpression. The miR‐148a‐3p/CTSA axis was implicated in immune cell infiltration and carcinogenesis of HCC. miR‐148a‐3p and CTSA might be prospective molecular targets to enhance the potency of immunotherapy in HCC. |
| doi_str_mv | 10.1002/jbt.23208 |
| format | Article |
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CTSA staining analysis was validated using the Human Protein Atlas database. Prognostic, diagnostic, gene set enrichment, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and immune infiltration analyses were implemented using the TCGA database with R software. Based on TCGA data and our cohort populations, CTSA expression was significantly elevated in HCC tissues compared with nontumor specimens. A significant negative correlation between miR‐148a‐3p and CTSA was observed in the TCGA data and our cohort population. Mechanistically, CTSA was a direct gene target of miR‐148a‐3p. Both CTSA and miR‐148a‐3p could serve as prognostic and diagnostic indicators in HCC. miR‐148a‐3p expression was significantly and negatively correlated with the StromalScore, ImmuneScore, and ESTIMATEScore in patients with liver cancer. miR‐148a‐3p mimic‐mediated apoptosis and the inhibition of HCC cell growth and migration were counteracted by CTSA overexpression. The miR‐148a‐3p/CTSA axis was implicated in immune cell infiltration and carcinogenesis of HCC. miR‐148a‐3p and CTSA might be prospective molecular targets to enhance the potency of immunotherapy in HCC.</description><identifier>ISSN: 1095-6670</identifier><identifier>EISSN: 1099-0461</identifier><identifier>DOI: 10.1002/jbt.23208</identifier><identifier>PMID: 36065643</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>Algorithms ; Apoptosis ; Bioinformatics ; Carboxypeptidase C ; Carcinogenesis ; Carcinogens ; Carcinoma, Hepatocellular - diagnosis ; Carcinoma, Hepatocellular - genetics ; Carcinoma, Hepatocellular - metabolism ; Cathepsin A - genetics ; Cathepsin A - metabolism ; Cell migration ; Cell Proliferation - genetics ; Chromosome 3 ; diagnosis ; Encyclopedias ; Gene expression ; Gene Expression Regulation, Neoplastic ; Genomes ; Hepatocellular carcinoma ; Humans ; immune infiltration ; Immune system ; Immunotherapy ; Infiltration ; Liver cancer ; Liver Neoplasms - diagnosis ; Liver Neoplasms - genetics ; Liver Neoplasms - metabolism ; MicroRNAs - metabolism ; migration ; Prognosis ; Software</subject><ispartof>Journal of biochemical and molecular toxicology, 2022-12, Vol.36 (12), p.e23208-n/a</ispartof><rights>2022 Wiley Periodicals LLC.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3538-dbdb8ede291a375d9155b3fbf040e25452acc845a5f3c0289aaececb90e2cddd3</citedby><cites>FETCH-LOGICAL-c3538-dbdb8ede291a375d9155b3fbf040e25452acc845a5f3c0289aaececb90e2cddd3</cites><orcidid>0000-0003-0181-0059</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjbt.23208$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjbt.23208$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36065643$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Xiulei</creatorcontrib><creatorcontrib>Chai, Wei</creatorcontrib><creatorcontrib>Wang, Tiegong</creatorcontrib><creatorcontrib>Chen, Xiongfei</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Li, Fengshan</creatorcontrib><creatorcontrib>Liu, Ruhai</creatorcontrib><title>Identification of the prognostic, diagnostic, and biological significance of the miR‐148a‐3p/cathepsin A axis in hepatocellular carcinoma</title><title>Journal of biochemical and molecular toxicology</title><addtitle>J Biochem Mol Toxicol</addtitle><description>A comprehensive analysis of the prognostic, diagnostic, and biological significance of miR‐148a‐3p and cathepsin A (CTSA) in hepatocellular carcinoma (HCC) was performed using bioinformatics algorithms with The Cancer Genome Atlas (TCGA) data. miR‐148a‐3p and CTSA gene expression in HCC tissues and nontumor specimens was analyzed using TCGA database with R software. CTSA staining analysis was validated using the Human Protein Atlas database. Prognostic, diagnostic, gene set enrichment, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and immune infiltration analyses were implemented using the TCGA database with R software. Based on TCGA data and our cohort populations, CTSA expression was significantly elevated in HCC tissues compared with nontumor specimens. A significant negative correlation between miR‐148a‐3p and CTSA was observed in the TCGA data and our cohort population. Mechanistically, CTSA was a direct gene target of miR‐148a‐3p. Both CTSA and miR‐148a‐3p could serve as prognostic and diagnostic indicators in HCC. miR‐148a‐3p expression was significantly and negatively correlated with the StromalScore, ImmuneScore, and ESTIMATEScore in patients with liver cancer. miR‐148a‐3p mimic‐mediated apoptosis and the inhibition of HCC cell growth and migration were counteracted by CTSA overexpression. The miR‐148a‐3p/CTSA axis was implicated in immune cell infiltration and carcinogenesis of HCC. miR‐148a‐3p and CTSA might be prospective molecular targets to enhance the potency of immunotherapy in HCC.</description><subject>Algorithms</subject><subject>Apoptosis</subject><subject>Bioinformatics</subject><subject>Carboxypeptidase C</subject><subject>Carcinogenesis</subject><subject>Carcinogens</subject><subject>Carcinoma, Hepatocellular - diagnosis</subject><subject>Carcinoma, Hepatocellular - genetics</subject><subject>Carcinoma, Hepatocellular - metabolism</subject><subject>Cathepsin A - genetics</subject><subject>Cathepsin A - metabolism</subject><subject>Cell migration</subject><subject>Cell Proliferation - genetics</subject><subject>Chromosome 3</subject><subject>diagnosis</subject><subject>Encyclopedias</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Neoplastic</subject><subject>Genomes</subject><subject>Hepatocellular carcinoma</subject><subject>Humans</subject><subject>immune infiltration</subject><subject>Immune system</subject><subject>Immunotherapy</subject><subject>Infiltration</subject><subject>Liver cancer</subject><subject>Liver Neoplasms - diagnosis</subject><subject>Liver Neoplasms - genetics</subject><subject>Liver Neoplasms - metabolism</subject><subject>MicroRNAs - metabolism</subject><subject>migration</subject><subject>Prognosis</subject><subject>Software</subject><issn>1095-6670</issn><issn>1099-0461</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kN9KwzAYxYMobk4vfAEJeCXYLU2atrmcwz8TQZB5XdIk3TLaZDYtujtfQPAZfRLjuu3Oq-_wfb9zQg4A5yEahgjh0TJvhphglB6AfogYC1AUh4cbTYM4TlAPnDi3RAhRltBj0CMximkckT74mkplGl1owRttDbQFbBYKrmo7N9Y1WlxDqflecyNhrm1p595QQqfnZuM1Qu2slX75-fwOo5T7QVYjH7xQK6cNHEP-oR30yi94Y4Uqy7bkNRS8FtrYip-Co4KXTp1t5wC83t3OJg_B0_P9dDJ-CgShJA1kLvNUSYVZyElCJQspzUmRFyhCCtOIYi5EGlFOCyIQThnnSiiRM38VUkoyAJddrv_nW6tcky1tWxv_ZIYTGuGEMRx56qqjRG2dq1WRrWpd8XqdhSj7Kz7zxWeb4j17sU1s80rJPblr2gOjDnjXpVr_n5Q93sy6yF_-gJEY</recordid><startdate>202212</startdate><enddate>202212</enddate><creator>Zhao, Xiulei</creator><creator>Chai, Wei</creator><creator>Wang, Tiegong</creator><creator>Chen, Xiongfei</creator><creator>Zhang, Lei</creator><creator>Li, Fengshan</creator><creator>Liu, Ruhai</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0003-0181-0059</orcidid></search><sort><creationdate>202212</creationdate><title>Identification of the prognostic, diagnostic, and biological significance of the miR‐148a‐3p/cathepsin A axis in hepatocellular carcinoma</title><author>Zhao, Xiulei ; Chai, Wei ; Wang, Tiegong ; Chen, Xiongfei ; Zhang, Lei ; Li, Fengshan ; Liu, Ruhai</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3538-dbdb8ede291a375d9155b3fbf040e25452acc845a5f3c0289aaececb90e2cddd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Algorithms</topic><topic>Apoptosis</topic><topic>Bioinformatics</topic><topic>Carboxypeptidase C</topic><topic>Carcinogenesis</topic><topic>Carcinogens</topic><topic>Carcinoma, Hepatocellular - diagnosis</topic><topic>Carcinoma, Hepatocellular - genetics</topic><topic>Carcinoma, Hepatocellular - metabolism</topic><topic>Cathepsin A - genetics</topic><topic>Cathepsin A - metabolism</topic><topic>Cell migration</topic><topic>Cell Proliferation - genetics</topic><topic>Chromosome 3</topic><topic>diagnosis</topic><topic>Encyclopedias</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Neoplastic</topic><topic>Genomes</topic><topic>Hepatocellular carcinoma</topic><topic>Humans</topic><topic>immune infiltration</topic><topic>Immune system</topic><topic>Immunotherapy</topic><topic>Infiltration</topic><topic>Liver cancer</topic><topic>Liver Neoplasms - diagnosis</topic><topic>Liver Neoplasms - genetics</topic><topic>Liver Neoplasms - metabolism</topic><topic>MicroRNAs - metabolism</topic><topic>migration</topic><topic>Prognosis</topic><topic>Software</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Xiulei</creatorcontrib><creatorcontrib>Chai, Wei</creatorcontrib><creatorcontrib>Wang, Tiegong</creatorcontrib><creatorcontrib>Chen, Xiongfei</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Li, Fengshan</creatorcontrib><creatorcontrib>Liu, Ruhai</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Journal of biochemical and molecular toxicology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Xiulei</au><au>Chai, Wei</au><au>Wang, Tiegong</au><au>Chen, Xiongfei</au><au>Zhang, Lei</au><au>Li, Fengshan</au><au>Liu, Ruhai</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification of the prognostic, diagnostic, and biological significance of the miR‐148a‐3p/cathepsin A axis in hepatocellular carcinoma</atitle><jtitle>Journal of biochemical and molecular toxicology</jtitle><addtitle>J Biochem Mol Toxicol</addtitle><date>2022-12</date><risdate>2022</risdate><volume>36</volume><issue>12</issue><spage>e23208</spage><epage>n/a</epage><pages>e23208-n/a</pages><issn>1095-6670</issn><eissn>1099-0461</eissn><abstract>A comprehensive analysis of the prognostic, diagnostic, and biological significance of miR‐148a‐3p and cathepsin A (CTSA) in hepatocellular carcinoma (HCC) was performed using bioinformatics algorithms with The Cancer Genome Atlas (TCGA) data. miR‐148a‐3p and CTSA gene expression in HCC tissues and nontumor specimens was analyzed using TCGA database with R software. CTSA staining analysis was validated using the Human Protein Atlas database. Prognostic, diagnostic, gene set enrichment, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and immune infiltration analyses were implemented using the TCGA database with R software. Based on TCGA data and our cohort populations, CTSA expression was significantly elevated in HCC tissues compared with nontumor specimens. A significant negative correlation between miR‐148a‐3p and CTSA was observed in the TCGA data and our cohort population. Mechanistically, CTSA was a direct gene target of miR‐148a‐3p. Both CTSA and miR‐148a‐3p could serve as prognostic and diagnostic indicators in HCC. miR‐148a‐3p expression was significantly and negatively correlated with the StromalScore, ImmuneScore, and ESTIMATEScore in patients with liver cancer. miR‐148a‐3p mimic‐mediated apoptosis and the inhibition of HCC cell growth and migration were counteracted by CTSA overexpression. The miR‐148a‐3p/CTSA axis was implicated in immune cell infiltration and carcinogenesis of HCC. miR‐148a‐3p and CTSA might be prospective molecular targets to enhance the potency of immunotherapy in HCC.</abstract><cop>United States</cop><pub>Wiley Subscription Services, Inc</pub><pmid>36065643</pmid><doi>10.1002/jbt.23208</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0003-0181-0059</orcidid></addata></record> |
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| subjects | Algorithms Apoptosis Bioinformatics Carboxypeptidase C Carcinogenesis Carcinogens Carcinoma, Hepatocellular - diagnosis Carcinoma, Hepatocellular - genetics Carcinoma, Hepatocellular - metabolism Cathepsin A - genetics Cathepsin A - metabolism Cell migration Cell Proliferation - genetics Chromosome 3 diagnosis Encyclopedias Gene expression Gene Expression Regulation, Neoplastic Genomes Hepatocellular carcinoma Humans immune infiltration Immune system Immunotherapy Infiltration Liver cancer Liver Neoplasms - diagnosis Liver Neoplasms - genetics Liver Neoplasms - metabolism MicroRNAs - metabolism migration Prognosis Software |
| title | Identification of the prognostic, diagnostic, and biological significance of the miR‐148a‐3p/cathepsin A axis in hepatocellular carcinoma |
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